Wall clock time and date at job start Sun Mar 29 2020 23:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47392 * 2 1 4 4 C 1.50699 * 109.47162 * 119.99800 * 2 1 3 5 5 H 1.08003 * 120.00654 * 119.99721 * 4 2 1 6 6 C 1.37882 * 120.00088 * 299.99973 * 4 2 1 7 7 N 1.31515 * 119.99799 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00071 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47293 * 60.00184 * 8 6 4 10 10 H 1.48504 * 109.47196 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47154 * 299.99933 * 8 6 4 12 12 C 1.50698 * 109.47426 * 239.99503 * 2 1 3 13 13 O 1.21279 * 120.00462 * 266.87849 * 12 2 1 14 14 N 1.34781 * 119.99860 * 86.87082 * 12 2 1 15 15 C 1.46721 * 126.55806 * 174.52513 * 14 12 2 16 16 C 1.50469 * 107.65227 * 180.26490 * 15 14 12 17 17 C 1.38509 * 132.36502 * 179.97438 * 16 15 14 18 18 N 1.32395 * 118.92793 * 180.02562 * 17 16 15 19 19 C 1.31806 * 120.78844 * 0.02562 * 18 17 16 20 20 N 1.31807 * 121.84738 * 359.97438 * 19 18 17 21 21 C 1.32394 * 120.69063 * 0.02562 * 20 19 18 22 22 C 1.46708 * 126.55643 * 354.83788 * 14 12 2 23 23 H 1.08999 * 109.47028 * 186.24081 * 1 2 3 24 24 H 1.08995 * 109.46929 * 306.23993 * 1 2 3 25 25 H 1.08994 * 109.46815 * 66.24018 * 1 2 3 26 26 H 0.96999 * 119.99727 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.82130 * 299.79587 * 15 14 12 28 28 H 1.08995 * 109.82451 * 60.73417 * 15 14 12 29 29 H 1.08008 * 120.53466 * 0.04598 * 17 16 15 30 30 H 1.07997 * 119.07674 * 180.02562 * 19 18 17 31 31 H 1.08999 * 109.81618 * 299.28207 * 22 14 12 32 32 H 1.08998 * 109.81126 * 60.18695 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.8064 -1.1208 4.0083 10 1 1.8270 -0.4197 5.2205 11 1 1.8258 -2.5200 4.0078 12 6 2.0324 -0.7105 -1.2304 13 8 2.2885 -1.8950 -1.1846 14 7 2.1970 -0.0295 -2.3818 15 6 2.7785 -0.5448 -3.6264 16 6 2.7619 0.5722 -4.6344 17 6 3.1813 0.6462 -5.9525 18 7 3.0384 1.7883 -6.6067 19 6 2.5069 2.8411 -6.0182 20 7 2.0975 2.8051 -4.7658 21 6 2.2090 1.6968 -4.0501 22 6 1.8348 1.3706 -2.6283 23 1 -0.3633 -1.0216 0.1117 24 1 -0.3633 0.6075 0.8288 25 1 -0.3633 0.4140 -0.9405 26 1 0.7090 1.1615 3.4844 27 1 3.8045 -0.8675 -3.4492 28 1 2.1847 -1.3821 -3.9929 29 1 3.6175 -0.2139 -6.4387 30 1 2.4031 3.7588 -6.5781 31 1 0.7623 1.5050 -2.4882 32 1 2.3818 2.0196 -1.9445 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328401588.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:38 Heat of formation + Delta-G solvation = 25.335904 kcal Electronic energy + Delta-G solvation = -17430.620071 eV Core-core repulsion = 14584.779844 eV Total energy + Delta-G solvation = -2845.840227 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.63214 -39.13929 -36.61157 -33.93256 -33.77277 -31.87785 -30.38069 -28.60321 -26.50151 -25.24522 -23.26130 -22.95948 -21.73103 -19.15402 -17.54028 -17.15622 -16.25555 -16.22517 -15.89667 -15.16514 -14.61440 -14.47222 -13.82890 -13.70533 -13.11150 -13.08010 -12.90279 -12.70109 -12.22031 -11.54092 -11.09776 -11.03148 -10.82088 -10.77580 -10.70827 -10.35076 -10.08874 -9.68905 -9.41547 -9.09084 -8.82132 -8.42974 -8.23373 -6.09953 -4.13935 0.66903 0.82970 3.05038 3.32595 3.35714 3.39647 3.48885 3.53070 3.63535 3.94533 4.25187 4.40904 4.45949 4.67949 5.17559 5.23679 5.45626 5.45656 5.59433 5.61644 5.70260 5.85381 6.14454 6.49930 6.63400 6.73383 6.76513 6.89647 7.37441 7.67790 7.83549 7.86767 7.97790 8.23583 8.89819 8.97961 9.51117 10.97832 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.045600 B = 0.005222 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.891357 B = 5360.926695 C = 5675.824830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.038 3.962 3 H 0.049 0.951 4 C -0.506 4.506 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.549 3.451 13 O -0.533 6.533 14 N -0.630 5.630 15 C 0.155 3.845 16 C -0.210 4.210 17 C 0.170 3.830 18 N -0.519 5.519 19 C 0.295 3.705 20 N -0.503 5.503 21 C 0.168 3.832 22 C 0.157 3.843 23 H 0.037 0.963 24 H 0.093 0.907 25 H 0.011 0.989 26 H 0.263 0.737 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.171 0.829 30 H 0.201 0.799 31 H 0.101 0.899 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.917 3.445 -14.291 14.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.017 3.983 3 H 0.067 0.933 4 C -0.544 4.544 5 H 0.087 0.913 6 C -0.139 4.139 7 N -0.532 5.532 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.342 3.658 13 O -0.407 6.407 14 N -0.369 5.369 15 C 0.031 3.969 16 C -0.215 4.215 17 C 0.004 3.996 18 N -0.232 5.232 19 C 0.007 3.993 20 N -0.217 5.217 21 C 0.021 3.979 22 C 0.032 3.968 23 H 0.057 0.943 24 H 0.111 0.889 25 H 0.030 0.970 26 H 0.073 0.927 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.188 0.812 30 H 0.218 0.782 31 H 0.118 0.882 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.859 3.684 -14.511 15.087 hybrid contribution 0.413 -1.008 1.065 1.523 sum 2.273 2.677 -13.447 13.898 Atomic orbital electron populations 1.21702 0.95861 1.01286 0.99779 1.18903 0.94453 0.96661 0.88304 0.93344 1.20990 1.31781 1.12696 0.88942 0.91252 1.24926 0.94946 0.94984 0.99084 1.69866 1.36637 1.22816 1.23868 0.86484 0.79216 0.79807 0.81526 1.20187 1.21257 1.20069 1.21933 0.74952 0.86995 0.81893 1.90572 1.50666 1.15912 1.83560 1.48518 1.64968 1.11548 1.11857 1.19954 1.00232 0.93682 0.83046 1.22148 1.02653 0.99254 0.97431 1.22586 0.92016 0.95811 0.89170 1.68531 1.15801 1.00332 1.38544 1.24990 0.89757 0.96972 0.87566 1.67668 1.18501 1.27654 1.07915 1.21924 0.90662 0.88700 0.96597 1.20083 1.02478 0.84849 0.89347 0.94332 0.88879 0.97012 0.92728 0.89816 0.89835 0.81181 0.78225 0.88163 0.87976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.86 37.16 0.33 -2.60 16 2 C 0.04 0.92 2.16 -92.92 -0.20 0.72 16 3 H 0.05 1.18 7.30 -51.93 -0.38 0.80 16 4 C -0.51 -13.94 8.33 -34.44 -0.29 -14.23 16 5 H 0.07 2.00 7.07 -52.48 -0.37 1.63 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.42 11.39 55.43 0.63 -23.79 16 8 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.55 12.27 6.94 -10.98 -0.08 12.20 16 13 O -0.53 -13.51 16.24 5.56 0.09 -13.42 16 14 N -0.63 -11.13 3.34 -176.28 -0.59 -11.72 16 15 C 0.16 2.22 6.91 -5.19 -0.04 2.18 16 16 C -0.21 -2.67 6.28 -104.62 -0.66 -3.32 16 17 C 0.17 1.83 11.31 -17.21 -0.19 1.63 16 18 N -0.52 -5.97 10.44 -14.58 -0.15 -6.12 16 19 C 0.29 3.27 12.28 -92.13 -1.13 2.14 16 20 N -0.50 -6.70 10.45 -10.89 -0.11 -6.81 16 21 C 0.17 2.34 7.46 -82.39 -0.61 1.73 16 22 C 0.16 2.37 6.33 -5.13 -0.03 2.34 16 23 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.09 2.29 6.26 -51.93 -0.33 1.97 16 25 H 0.01 0.22 7.39 -51.93 -0.38 -0.17 16 26 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.17 1.26 8.06 -52.48 -0.42 0.84 16 30 H 0.20 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.10 1.46 7.40 -51.93 -0.38 1.08 16 32 H 0.10 1.53 7.76 -51.93 -0.40 1.13 16 LS Contribution 276.92 15.07 4.17 4.17 Total: -1.00 -31.18 276.92 -7.47 -38.66 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -3.50 Total: -1.61 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -2.99 Total: 4.37 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -0.22 Total: -48.45 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.09 Total: -13.42 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.18 -7.47 -38.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328401588.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.991 kcal (2) G-P(sol) polarization free energy of solvation -31.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds