Wall clock time and date at job start Sun Mar 29 2020 23:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47392 * 2 1 4 4 C 1.50699 * 109.47162 * 119.99800 * 2 1 3 5 5 H 1.08003 * 120.00654 * 119.99721 * 4 2 1 6 6 C 1.37882 * 120.00088 * 299.99973 * 4 2 1 7 7 N 1.31515 * 119.99799 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00071 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47293 * 60.00184 * 8 6 4 10 10 H 1.48504 * 109.47196 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47154 * 299.99933 * 8 6 4 12 12 C 1.50698 * 109.47426 * 239.99503 * 2 1 3 13 13 O 1.21279 * 120.00462 * 266.87849 * 12 2 1 14 14 N 1.34781 * 119.99860 * 86.87082 * 12 2 1 15 15 C 1.46721 * 126.55806 * 174.52513 * 14 12 2 16 16 C 1.50469 * 107.65227 * 180.26490 * 15 14 12 17 17 C 1.38509 * 132.36502 * 179.97438 * 16 15 14 18 18 N 1.32395 * 118.92793 * 180.02562 * 17 16 15 19 19 C 1.31806 * 120.78844 * 0.02562 * 18 17 16 20 20 N 1.31807 * 121.84738 * 359.97438 * 19 18 17 21 21 C 1.32394 * 120.69063 * 0.02562 * 20 19 18 22 22 C 1.46708 * 126.55643 * 354.83788 * 14 12 2 23 23 H 1.08999 * 109.47028 * 186.24081 * 1 2 3 24 24 H 1.08995 * 109.46929 * 306.23993 * 1 2 3 25 25 H 1.08994 * 109.46815 * 66.24018 * 1 2 3 26 26 H 0.96999 * 119.99727 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.82130 * 299.79587 * 15 14 12 28 28 H 1.08995 * 109.82451 * 60.73417 * 15 14 12 29 29 H 1.08008 * 120.53466 * 0.04598 * 17 16 15 30 30 H 1.07997 * 119.07674 * 180.02562 * 19 18 17 31 31 H 1.08999 * 109.81618 * 299.28207 * 22 14 12 32 32 H 1.08998 * 109.81126 * 60.18695 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.8064 -1.1208 4.0083 10 1 1.8270 -0.4197 5.2205 11 1 1.8258 -2.5200 4.0078 12 6 2.0324 -0.7105 -1.2304 13 8 2.2885 -1.8950 -1.1846 14 7 2.1970 -0.0295 -2.3818 15 6 2.7785 -0.5448 -3.6264 16 6 2.7619 0.5722 -4.6344 17 6 3.1813 0.6462 -5.9525 18 7 3.0384 1.7883 -6.6067 19 6 2.5069 2.8411 -6.0182 20 7 2.0975 2.8051 -4.7658 21 6 2.2090 1.6968 -4.0501 22 6 1.8348 1.3706 -2.6283 23 1 -0.3633 -1.0216 0.1117 24 1 -0.3633 0.6075 0.8288 25 1 -0.3633 0.4140 -0.9405 26 1 0.7090 1.1615 3.4844 27 1 3.8045 -0.8675 -3.4492 28 1 2.1847 -1.3821 -3.9929 29 1 3.6175 -0.2139 -6.4387 30 1 2.4031 3.7588 -6.5781 31 1 0.7623 1.5050 -2.4882 32 1 2.3818 2.0196 -1.9445 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328401588.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:38 Heat of formation + Delta-G solvation = 5.480419 kcal Electronic energy + Delta-G solvation = -17431.481069 eV Core-core repulsion = 14584.779844 eV Total energy + Delta-G solvation = -2846.701225 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.65288 -40.67378 -38.01916 -35.82356 -34.82165 -33.29496 -32.13120 -29.77987 -27.72772 -27.27633 -24.60551 -24.02995 -23.18603 -20.64883 -18.81020 -18.44440 -17.91666 -17.53139 -17.30692 -16.70636 -16.31154 -15.69462 -15.23860 -14.67385 -14.61667 -14.47047 -14.28044 -14.20802 -13.59266 -13.43553 -12.95543 -12.68709 -12.62618 -12.27833 -12.07795 -12.03345 -11.74789 -11.10558 -10.77759 -10.70372 -10.44293 -10.33594 -9.60725 -8.16736 -6.27585 -0.28064 -0.08906 1.42973 1.44430 1.51883 1.70194 1.73512 2.43430 2.56828 2.61235 3.01717 3.13799 3.32176 3.50055 3.66594 4.04730 4.27268 4.41061 4.41508 4.44817 4.50560 4.72108 4.72917 4.90397 5.00260 5.12986 5.27462 5.45314 5.69960 5.80050 5.87990 6.11578 6.41365 6.77409 6.95015 7.24197 7.41051 8.89444 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.045600 B = 0.005222 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.891357 B = 5360.926695 C = 5675.824830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.034 3.966 3 H 0.044 0.956 4 C -0.532 4.532 5 H 0.047 0.953 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.956 3.044 9 H -0.274 1.274 10 H -0.275 1.275 11 H -0.277 1.277 12 C 0.552 3.448 13 O -0.572 6.572 14 N -0.627 5.627 15 C 0.155 3.845 16 C -0.214 4.214 17 C 0.184 3.816 18 N -0.524 5.524 19 C 0.298 3.702 20 N -0.521 5.521 21 C 0.156 3.844 22 C 0.155 3.845 23 H 0.023 0.977 24 H 0.074 0.926 25 H 0.043 0.957 26 H 0.266 0.734 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.207 0.793 30 H 0.236 0.764 31 H 0.105 0.895 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.297 3.999 -15.875 16.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.013 3.987 3 H 0.062 0.938 4 C -0.570 4.570 5 H 0.065 0.935 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.782 3.218 9 H -0.199 1.199 10 H -0.200 1.200 11 H -0.203 1.203 12 C 0.345 3.655 13 O -0.450 6.450 14 N -0.363 5.363 15 C 0.032 3.968 16 C -0.218 4.218 17 C 0.018 3.982 18 N -0.237 5.237 19 C 0.011 3.989 20 N -0.235 5.235 21 C 0.009 3.991 22 C 0.031 3.969 23 H 0.042 0.958 24 H 0.093 0.907 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.223 0.777 30 H 0.252 0.748 31 H 0.122 0.878 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.236 4.288 -16.132 16.841 hybrid contribution 0.311 -1.101 1.438 1.838 sum 2.547 3.186 -14.694 15.250 Atomic orbital electron populations 1.21514 0.95037 1.00119 1.00713 1.18811 0.95176 0.96109 0.88640 0.93793 1.21155 1.32334 1.12615 0.90918 0.93454 1.25570 0.95033 0.95639 1.01367 1.69943 1.36810 1.23353 1.24572 0.85638 0.78769 0.78679 0.78739 1.19892 1.19988 1.20257 1.21325 0.75045 0.86385 0.82756 1.90543 1.52649 1.17279 1.84512 1.48179 1.63679 1.12602 1.11836 1.20053 1.00361 0.94523 0.81878 1.21998 1.03832 0.97950 0.98055 1.23145 0.90264 0.96614 0.88144 1.68676 1.15986 1.00617 1.38456 1.25734 0.88158 0.98081 0.86877 1.67702 1.19488 1.27454 1.08892 1.21662 0.91725 0.89700 0.95974 1.20104 1.02774 0.83213 0.90818 0.95804 0.90679 0.93822 0.92435 0.89342 0.89081 0.77659 0.74837 0.87752 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 8.86 71.98 0.64 -4.71 16 2 C 0.03 1.67 2.16 -12.29 -0.03 1.64 16 3 H 0.04 2.18 7.30 -2.39 -0.02 2.17 16 4 C -0.53 -30.03 8.33 25.60 0.21 -29.82 16 5 H 0.05 2.83 7.07 -2.91 -0.02 2.81 16 6 C 0.02 1.30 5.30 84.66 0.45 1.75 16 7 N -0.91 -49.90 11.39 21.45 0.24 -49.66 16 8 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 9 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 12 C 0.55 25.04 6.94 87.66 0.61 25.65 16 13 O -0.57 -29.62 16.24 -3.03 -0.05 -29.67 16 14 N -0.63 -21.95 3.34 -830.02 -2.77 -24.72 16 15 C 0.16 4.24 6.91 85.52 0.59 4.83 16 16 C -0.21 -4.96 6.28 -19.86 -0.12 -5.08 16 17 C 0.18 3.36 11.31 84.67 0.96 4.32 16 18 N -0.52 -10.30 10.44 -200.05 -2.09 -12.39 16 19 C 0.30 5.72 12.28 180.88 2.22 7.94 16 20 N -0.52 -12.78 10.45 -188.37 -1.97 -14.74 16 21 C 0.16 4.10 7.46 42.45 0.32 4.41 16 22 C 0.15 4.58 6.33 85.56 0.54 5.12 16 23 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.07 3.74 6.26 -2.39 -0.01 3.72 16 25 H 0.04 1.67 7.39 -2.39 -0.02 1.66 16 26 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 27 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 28 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.21 2.17 8.06 -2.91 -0.02 2.14 16 30 H 0.24 2.58 8.06 -2.91 -0.02 2.55 16 31 H 0.10 2.98 7.40 -2.39 -0.02 2.96 16 32 H 0.10 2.98 7.76 -2.39 -0.02 2.96 16 Total: -1.00 -67.21 276.92 2.91 -64.30 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: 1.14 Total: 4.94 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 6.38 Total: 16.07 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -6.59 Total: -101.51 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -0.05 Total: -29.67 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -67.21 2.91 -64.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328401588.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.776 kcal (2) G-P(sol) polarization free energy of solvation -67.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds