Wall clock time and date at job start Sun Mar 29 2020 22:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47464 * 2 1 4 4 H 1.08997 * 109.46940 * 54.99613 * 3 2 1 5 5 C 1.53001 * 109.46902 * 295.00271 * 3 2 1 6 6 C 1.50695 * 109.47545 * 175.00268 * 3 2 1 7 7 C 1.38324 * 119.91739 * 59.72094 * 6 3 2 8 8 C 1.38066 * 120.08169 * 179.77252 * 7 6 3 9 9 C 1.39027 * 119.91436 * 0.48401 * 8 7 6 10 10 N 1.39537 * 120.08133 * 179.79574 * 9 8 7 11 11 C 1.34778 * 119.99919 * 213.37453 * 10 9 8 12 12 O 1.21745 * 119.99837 * 5.27554 * 11 10 9 13 13 C 1.46172 * 119.99974 * 185.27392 * 11 10 9 14 14 H 1.07995 * 119.99749 * 0.02562 * 13 11 10 15 15 C 1.40122 * 119.99446 * 179.97438 * 13 11 10 16 16 N 1.30630 * 120.00546 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 119.99441 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47178 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47340 * 119.99839 * 17 15 13 20 20 H 1.48500 * 109.46847 * 240.00057 * 17 15 13 21 21 C 1.39023 * 119.83548 * 359.76792 * 9 8 7 22 22 C 1.38063 * 119.91774 * 0.02562 * 21 9 8 23 23 H 1.09005 * 109.47289 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47052 * 299.99905 * 1 2 3 25 25 H 1.09005 * 109.47327 * 60.00307 * 1 2 3 26 26 H 1.09002 * 109.47288 * 239.99599 * 2 1 3 27 27 H 1.09005 * 109.47327 * 119.99693 * 2 1 3 28 28 H 1.08999 * 109.47784 * 59.99483 * 5 3 2 29 29 H 1.08997 * 109.47150 * 179.97438 * 5 3 2 30 30 H 1.09007 * 109.46856 * 299.99391 * 5 3 2 31 31 H 1.07996 * 119.96162 * 0.02562 * 7 6 3 32 32 H 1.08000 * 120.04385 * 180.25856 * 8 7 6 33 33 H 0.97000 * 120.00055 * 33.36826 * 10 9 8 34 34 H 0.97001 * 120.00069 * 180.02562 * 16 15 13 35 35 H 1.08001 * 120.04387 * 179.97438 * 21 9 8 36 36 H 1.07994 * 119.96078 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 3.5419 1.4443 0.1238 7 6 4.3138 0.8108 -0.8335 8 6 5.6902 0.8144 -0.7259 9 6 6.2998 1.4472 0.3515 10 7 7.6905 1.4492 0.4659 11 6 8.2665 1.4156 1.6839 12 8 7.5779 1.2866 2.6795 13 6 9.7180 1.5341 1.8094 14 1 10.3288 1.6489 0.9262 15 6 10.3167 1.4997 3.0759 16 7 9.5779 1.3613 4.1442 17 14 12.1716 1.6517 3.2364 18 1 12.7750 1.7969 1.8873 19 1 12.5014 2.8443 4.0575 20 1 12.7132 0.4342 3.8919 21 6 5.5205 2.0783 1.3143 22 6 4.1448 2.0741 1.1977 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.5489 2.1252 -1.3970 29 1 1.9982 3.1543 -1.3072 30 1 2.0699 1.5874 -2.1492 31 1 3.8393 0.3163 -1.6681 32 1 6.2925 0.3232 -1.4759 33 1 8.2427 1.4748 -0.3312 34 1 9.9924 1.3378 5.0209 35 1 5.9905 2.5705 2.1529 36 1 3.5387 2.5638 1.9455 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003290325.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:30 Heat of formation + Delta-G solvation = -38.068502 kcal Electronic energy + Delta-G solvation = -17268.609947 eV Core-core repulsion = 14523.560642 eV Total energy + Delta-G solvation = -2745.049305 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.37793 -37.57273 -35.57153 -33.18715 -32.40892 -30.27086 -30.10705 -28.00428 -26.21991 -24.33329 -22.58473 -21.58335 -20.20509 -19.21133 -17.50130 -16.40348 -15.54029 -15.39490 -15.02328 -14.27387 -13.99009 -13.76241 -13.47453 -13.00967 -12.93104 -12.60394 -12.41473 -12.22971 -11.93466 -11.69205 -11.51574 -11.27162 -11.12539 -10.88301 -10.67672 -10.59993 -10.37279 -10.30724 -10.20356 -9.18914 -8.84030 -8.32652 -7.72725 -6.95704 -6.34382 -4.81478 2.02191 2.09359 3.06003 3.14318 3.18809 3.99498 4.26403 4.56918 4.68980 4.89122 4.95397 5.13315 5.38912 5.48940 5.54959 5.57832 5.59420 5.67035 5.77171 5.93237 5.98052 5.99535 6.07381 6.08512 6.24917 6.41469 6.42870 6.50670 6.66047 6.98783 7.15649 7.25562 7.28748 7.50420 7.76665 8.09153 8.21646 8.85573 9.24295 10.39849 10.57629 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.057015 B = 0.004248 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.978428 B = 6590.476255 C = 6795.530053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.043 4.043 4 H 0.071 0.929 5 C -0.143 4.143 6 C -0.128 4.128 7 C -0.094 4.094 8 C -0.177 4.177 9 C 0.190 3.810 10 N -0.701 5.701 11 C 0.543 3.457 12 O -0.560 6.560 13 C -0.539 4.539 14 H 0.072 0.928 15 C 0.086 3.914 16 N -0.760 5.760 17 Si 0.912 3.088 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.275 1.275 21 C -0.128 4.128 22 C -0.097 4.097 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.392 0.608 34 H 0.271 0.729 35 H 0.136 0.864 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.293 0.102 -9.147 14.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.062 4.062 4 H 0.089 0.911 5 C -0.200 4.200 6 C -0.129 4.129 7 C -0.113 4.113 8 C -0.198 4.198 9 C 0.091 3.909 10 N -0.345 5.345 11 C 0.349 3.651 12 O -0.441 6.441 13 C -0.575 4.575 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.388 5.388 17 Si 0.737 3.263 18 H -0.186 1.186 19 H -0.200 1.200 20 H -0.200 1.200 21 C -0.149 4.149 22 C -0.116 4.116 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.225 0.775 34 H 0.082 0.918 35 H 0.154 0.846 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.682 0.007 -8.163 14.251 hybrid contribution 1.290 -0.013 -0.279 1.320 sum -10.392 -0.006 -8.441 13.388 Atomic orbital electron populations 1.21840 0.96265 1.01253 1.01664 1.21594 0.95117 0.96397 1.02298 1.20018 0.91829 0.96019 0.98300 0.91080 1.21885 1.00448 1.00569 0.97074 1.19541 0.94355 1.02461 0.96573 1.20515 0.92807 0.99573 0.98398 1.20844 0.94797 1.03526 1.00656 1.17985 0.85235 0.93229 0.94462 1.44150 1.02734 1.76720 1.10850 1.18390 0.89315 0.77146 0.80237 1.90639 1.64573 1.53184 1.35746 1.20901 0.90081 1.52896 0.93641 0.90980 1.25747 0.99936 0.92556 0.95243 1.69994 1.36415 1.33767 0.98600 0.86233 0.82506 0.78404 0.79188 1.18646 1.19987 1.20007 1.21308 0.93036 1.00150 1.00381 1.20852 0.94331 0.99430 0.96977 0.93083 0.92889 0.92664 0.92020 0.91844 0.92816 0.92761 0.92716 0.87092 0.86791 0.77473 0.91804 0.84610 0.86952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.67 37.15 0.36 -1.06 16 2 C -0.12 -1.33 5.14 -26.73 -0.14 -1.47 16 3 C -0.04 -0.54 2.56 -91.77 -0.23 -0.77 16 4 H 0.07 0.86 7.87 -51.93 -0.41 0.45 16 5 C -0.14 -1.52 8.76 37.16 0.33 -1.20 16 6 C -0.13 -2.02 4.79 -104.56 -0.50 -2.52 16 7 C -0.09 -1.49 8.75 -39.61 -0.35 -1.83 16 8 C -0.18 -3.15 9.97 -39.35 -0.39 -3.54 16 9 C 0.19 4.06 6.28 -83.77 -0.53 3.54 16 10 N -0.70 -16.07 5.32 -11.20 -0.06 -16.13 16 11 C 0.54 15.21 7.47 -13.08 -0.10 15.11 16 12 O -0.56 -17.62 12.70 5.15 0.07 -17.56 16 13 C -0.54 -14.82 9.54 -35.69 -0.34 -15.16 16 14 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 15 C 0.09 2.34 5.50 -17.36 -0.10 2.24 16 16 N -0.76 -22.16 11.82 55.55 0.66 -21.50 16 17 Si 0.91 19.56 29.56 -169.99 -5.02 14.54 16 18 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 19 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 C -0.13 -2.79 8.65 -39.35 -0.34 -3.13 16 22 C -0.10 -1.76 9.66 -39.61 -0.38 -2.14 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.47 6.57 -51.93 -0.34 0.13 16 26 H 0.06 0.69 7.55 -51.93 -0.39 0.29 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.49 6.57 -51.93 -0.34 0.15 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.57 7.40 -51.93 -0.38 0.19 16 31 H 0.11 1.46 7.15 -52.49 -0.38 1.08 16 32 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 33 H 0.39 7.69 8.79 -40.82 -0.36 7.33 16 34 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16 35 H 0.14 3.38 6.42 -52.49 -0.34 3.04 16 36 H 0.11 1.81 7.94 -52.49 -0.42 1.39 16 LS Contribution 300.47 15.07 4.53 4.53 Total: -1.00 -32.06 300.47 -7.56 -39.61 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -5.01 Total: 8.45 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -2.71 Total: -11.94 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.60 Total: -37.63 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: 0.07 Total: -17.56 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.06 -7.56 -39.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003290325.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.545 kcal (2) G-P(sol) polarization free energy of solvation -32.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds