Wall clock time and date at job start Sun Mar 29 2020 22:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47464 * 2 1 4 4 H 1.08997 * 109.46940 * 54.99613 * 3 2 1 5 5 C 1.53001 * 109.46902 * 295.00271 * 3 2 1 6 6 C 1.50695 * 109.47545 * 175.00268 * 3 2 1 7 7 C 1.38324 * 119.91739 * 59.72094 * 6 3 2 8 8 C 1.38066 * 120.08169 * 179.77252 * 7 6 3 9 9 C 1.39027 * 119.91436 * 0.48401 * 8 7 6 10 10 N 1.39537 * 120.08133 * 179.79574 * 9 8 7 11 11 C 1.34778 * 119.99919 * 213.37453 * 10 9 8 12 12 O 1.21745 * 119.99837 * 5.27554 * 11 10 9 13 13 C 1.46172 * 119.99974 * 185.27392 * 11 10 9 14 14 H 1.07995 * 119.99749 * 0.02562 * 13 11 10 15 15 C 1.40122 * 119.99446 * 179.97438 * 13 11 10 16 16 N 1.30630 * 120.00546 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 119.99441 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47178 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47340 * 119.99839 * 17 15 13 20 20 H 1.48500 * 109.46847 * 240.00057 * 17 15 13 21 21 C 1.39023 * 119.83548 * 359.76792 * 9 8 7 22 22 C 1.38063 * 119.91774 * 0.02562 * 21 9 8 23 23 H 1.09005 * 109.47289 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47052 * 299.99905 * 1 2 3 25 25 H 1.09005 * 109.47327 * 60.00307 * 1 2 3 26 26 H 1.09002 * 109.47288 * 239.99599 * 2 1 3 27 27 H 1.09005 * 109.47327 * 119.99693 * 2 1 3 28 28 H 1.08999 * 109.47784 * 59.99483 * 5 3 2 29 29 H 1.08997 * 109.47150 * 179.97438 * 5 3 2 30 30 H 1.09007 * 109.46856 * 299.99391 * 5 3 2 31 31 H 1.07996 * 119.96162 * 0.02562 * 7 6 3 32 32 H 1.08000 * 120.04385 * 180.25856 * 8 7 6 33 33 H 0.97000 * 120.00055 * 33.36826 * 10 9 8 34 34 H 0.97001 * 120.00069 * 180.02562 * 16 15 13 35 35 H 1.08001 * 120.04387 * 179.97438 * 21 9 8 36 36 H 1.07994 * 119.96078 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 3.5419 1.4443 0.1238 7 6 4.3138 0.8108 -0.8335 8 6 5.6902 0.8144 -0.7259 9 6 6.2998 1.4472 0.3515 10 7 7.6905 1.4492 0.4659 11 6 8.2665 1.4156 1.6839 12 8 7.5779 1.2866 2.6795 13 6 9.7180 1.5341 1.8094 14 1 10.3288 1.6489 0.9262 15 6 10.3167 1.4997 3.0759 16 7 9.5779 1.3613 4.1442 17 14 12.1716 1.6517 3.2364 18 1 12.7750 1.7969 1.8873 19 1 12.5014 2.8443 4.0575 20 1 12.7132 0.4342 3.8919 21 6 5.5205 2.0783 1.3143 22 6 4.1448 2.0741 1.1977 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.5489 2.1252 -1.3970 29 1 1.9982 3.1543 -1.3072 30 1 2.0699 1.5874 -2.1492 31 1 3.8393 0.3163 -1.6681 32 1 6.2925 0.3232 -1.4759 33 1 8.2427 1.4748 -0.3312 34 1 9.9924 1.3378 5.0209 35 1 5.9905 2.5705 2.1529 36 1 3.5387 2.5638 1.9455 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003290325.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:30 Heat of formation + Delta-G solvation = -58.006505 kcal Electronic energy + Delta-G solvation = -17269.474523 eV Core-core repulsion = 14523.560642 eV Total energy + Delta-G solvation = -2745.913881 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.93592 -39.26067 -36.95221 -34.97481 -34.42602 -31.74411 -31.25509 -29.42088 -28.02905 -25.41563 -24.02750 -23.04994 -21.82308 -20.53053 -19.44422 -18.03126 -17.57052 -16.67603 -16.29364 -15.83835 -15.37834 -15.18330 -14.74424 -14.63736 -14.39736 -14.12510 -13.70232 -13.61925 -13.11895 -13.01117 -12.81495 -12.79384 -12.72151 -12.43573 -12.13530 -11.99934 -11.62447 -11.46281 -11.30043 -11.04890 -10.67922 -9.98476 -9.68762 -8.63240 -8.38490 -6.96508 0.54013 0.60390 1.38582 1.38675 1.57199 2.20012 2.36210 2.90657 3.01194 3.57016 3.84662 3.93808 4.15562 4.24804 4.26890 4.55443 4.58762 4.63589 4.72645 4.81046 4.87508 4.94310 5.10903 5.18992 5.20618 5.22786 5.24353 5.28326 5.46912 5.52387 5.55941 5.62812 5.81102 5.85789 6.01013 6.16487 6.45147 6.76075 7.34080 8.34524 8.55606 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.057015 B = 0.004248 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.978428 B = 6590.476255 C = 6795.530053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.043 4.043 4 H 0.073 0.927 5 C -0.139 4.139 6 C -0.112 4.112 7 C -0.087 4.087 8 C -0.166 4.166 9 C 0.150 3.850 10 N -0.695 5.695 11 C 0.528 3.472 12 O -0.608 6.608 13 C -0.566 4.566 14 H 0.093 0.907 15 C 0.028 3.972 16 N -0.815 5.815 17 Si 1.004 2.996 18 H -0.245 1.245 19 H -0.268 1.268 20 H -0.267 1.267 21 C -0.157 4.157 22 C -0.105 4.105 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.044 0.956 28 H 0.075 0.925 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.151 0.849 32 H 0.140 0.860 33 H 0.406 0.594 34 H 0.278 0.722 35 H 0.089 0.911 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.011 -0.483 -11.618 16.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.061 4.061 4 H 0.091 0.909 5 C -0.196 4.196 6 C -0.113 4.113 7 C -0.105 4.105 8 C -0.187 4.187 9 C 0.053 3.947 10 N -0.339 5.339 11 C 0.334 3.666 12 O -0.494 6.494 13 C -0.602 4.602 14 H 0.111 0.889 15 C -0.188 4.188 16 N -0.444 5.444 17 Si 0.822 3.178 18 H -0.168 1.168 19 H -0.193 1.193 20 H -0.192 1.192 21 C -0.179 4.179 22 C -0.124 4.124 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.169 0.831 32 H 0.158 0.842 33 H 0.242 0.758 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.435 -0.573 -10.698 16.414 hybrid contribution 1.317 0.166 0.424 1.393 sum -11.118 -0.407 -10.274 15.144 Atomic orbital electron populations 1.21810 0.94413 1.02059 1.02370 1.21577 0.96751 0.95145 1.01832 1.20107 0.88951 0.97307 0.99770 0.90904 1.21865 1.01976 0.99967 0.95823 1.19997 0.96638 0.99792 0.94839 1.20971 0.91938 0.98503 0.99103 1.21130 0.96041 1.02128 0.99432 1.18262 0.84429 0.95673 0.96356 1.43689 1.03853 1.76557 1.09840 1.18774 0.89939 0.76767 0.81081 1.90594 1.65640 1.55343 1.37823 1.21449 0.90386 1.53327 0.95059 0.88911 1.27045 1.06251 0.91156 0.94339 1.70160 1.39527 1.35088 0.99595 0.84884 0.74329 0.78618 0.79943 1.16806 1.19257 1.19206 1.21112 0.94876 1.01963 0.99912 1.21026 0.92876 1.00047 0.98449 0.92308 0.92895 0.91264 0.91182 0.93672 0.90656 0.93361 0.91898 0.83096 0.84223 0.75843 0.91243 0.89275 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.67 71.98 0.70 -1.58 16 2 C -0.12 -2.28 5.14 30.59 0.16 -2.12 16 3 C -0.04 -0.94 2.56 -11.54 -0.03 -0.97 16 4 H 0.07 1.60 7.87 -2.39 -0.02 1.58 16 5 C -0.14 -2.44 8.76 71.98 0.63 -1.81 16 6 C -0.11 -3.33 4.79 -19.82 -0.09 -3.43 16 7 C -0.09 -2.49 8.75 22.25 0.19 -2.30 16 8 C -0.17 -5.69 9.97 22.42 0.22 -5.46 16 9 C 0.15 6.61 6.28 38.29 0.24 6.85 16 10 N -0.70 -33.08 5.32 -307.53 -1.64 -34.72 16 11 C 0.53 31.14 7.47 86.30 0.65 31.79 16 12 O -0.61 -41.00 12.70 -4.49 -0.06 -41.06 16 13 C -0.57 -32.00 9.54 24.79 0.24 -31.76 16 14 H 0.09 4.65 7.85 -2.91 -0.02 4.63 16 15 C 0.03 1.56 5.50 85.33 0.47 2.03 16 16 N -0.81 -49.60 11.82 21.85 0.26 -49.34 16 17 Si 1.00 40.38 29.56 68.60 2.03 42.41 16 18 H -0.25 -9.07 7.11 99.48 0.71 -8.36 16 19 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 20 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 21 C -0.16 -7.32 8.65 22.42 0.19 -7.13 16 22 C -0.11 -3.90 9.66 22.25 0.21 -3.69 16 23 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 24 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.07 0.87 6.57 -2.38 -0.02 0.86 16 26 H 0.07 1.27 7.55 -2.39 -0.02 1.25 16 27 H 0.04 1.05 8.14 -2.38 -0.02 1.04 16 28 H 0.07 1.03 6.57 -2.39 -0.02 1.02 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 30 H 0.06 1.02 7.40 -2.38 -0.02 1.00 16 31 H 0.15 3.20 7.15 -2.91 -0.02 3.18 16 32 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 33 H 0.41 16.23 8.79 -92.71 -0.82 15.42 16 34 H 0.28 15.20 8.29 -92.71 -0.77 14.44 16 35 H 0.09 4.93 6.42 -2.91 -0.02 4.91 16 36 H 0.12 4.14 7.94 -2.91 -0.02 4.12 16 Total: -1.00 -74.72 300.47 4.63 -70.09 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: 0.26 Total: 32.21 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: 3.78 Total: -19.58 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -1.38 Total: -84.06 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -0.06 Total: -41.06 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Total: -74.72 4.63 -70.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003290325.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.084 kcal (2) G-P(sol) polarization free energy of solvation -74.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds