Wall clock time and date at job start Sun Mar 29 2020 22:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47326 * 2 1 4 4 C 1.52997 * 109.46753 * 240.00069 * 2 1 3 5 5 C 1.50700 * 109.46845 * 120.00411 * 2 1 3 6 6 O 1.21277 * 120.00176 * 359.97438 * 5 2 1 7 7 N 1.34776 * 119.99673 * 179.97438 * 5 2 1 8 8 C 1.39234 * 119.99943 * 185.17808 * 7 5 2 9 9 C 1.39482 * 119.83496 * 324.06085 * 8 7 5 10 10 C 1.36377 * 120.17074 * 180.29626 * 9 8 7 11 11 C 1.40870 * 119.82481 * 359.47988 * 10 9 8 12 12 C 1.41158 * 120.16596 * 180.24876 * 11 10 9 13 13 H 1.07998 * 119.99976 * 205.03175 * 12 11 10 14 14 C 1.39899 * 119.99680 * 25.02631 * 12 11 10 15 15 N 1.30877 * 120.00174 * 17.77980 * 14 12 11 16 16 Si 1.86801 * 120.00307 * 197.77343 * 14 12 11 17 17 H 1.48494 * 109.47096 * 94.98319 * 16 14 12 18 18 H 1.48496 * 109.47041 * 214.98533 * 16 14 12 19 19 H 1.48498 * 109.46869 * 334.98281 * 16 14 12 20 20 C 1.40875 * 119.67210 * 0.52005 * 11 10 9 21 21 C 1.36366 * 119.82948 * 359.73209 * 20 11 10 22 22 H 1.09005 * 109.46883 * 299.99767 * 1 2 3 23 23 H 1.08997 * 109.47345 * 59.99585 * 1 2 3 24 24 H 1.08998 * 109.47486 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47246 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.47247 * 300.00475 * 3 2 1 27 27 H 1.09000 * 109.47364 * 60.00090 * 3 2 1 28 28 H 1.09006 * 109.47156 * 300.00271 * 4 2 1 29 29 H 1.08999 * 109.47273 * 59.99694 * 4 2 1 30 30 H 1.08998 * 109.47053 * 179.97438 * 4 2 1 31 31 H 0.96999 * 120.00004 * 5.18740 * 7 5 2 32 32 H 1.07992 * 119.91447 * 0.02562 * 9 8 7 33 33 H 1.07991 * 120.08747 * 179.70345 * 10 9 8 34 34 H 0.96993 * 120.00233 * 180.02562 * 15 14 12 35 35 H 1.08000 * 120.08320 * 179.70674 * 20 11 10 36 36 H 1.08002 * 119.91582 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2304 6 8 1.2442 -1.1710 2.0289 7 7 3.3574 -0.8341 1.4434 8 6 3.8224 -1.5824 2.5216 9 6 3.1194 -1.5745 3.7263 10 6 3.5720 -2.3001 4.7887 11 6 4.7466 -3.0676 4.6635 12 6 5.2186 -3.8255 5.7569 13 1 6.2668 -4.0757 5.8281 14 6 4.3285 -4.2523 6.7483 15 7 3.0415 -4.2645 6.5110 16 14 4.9770 -4.8049 8.4107 17 1 4.9354 -3.6654 9.3619 18 1 4.1335 -5.9123 8.9277 19 1 6.3774 -5.2763 8.2638 20 6 5.4511 -3.0704 3.4436 21 6 4.9891 -2.3357 2.3918 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 3.1301 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6768 1.9563 0.8900 28 1 1.6765 -1.7489 -1.2493 29 1 1.6766 -0.2074 -2.1392 30 1 3.1299 -0.7209 -1.2495 31 1 3.9871 -0.4017 0.8457 32 1 2.2169 -0.9888 3.8194 33 1 3.0293 -2.2892 5.7223 34 1 2.4244 -4.5601 7.1984 35 1 6.3550 -3.6527 3.3418 36 1 5.5283 -2.3366 1.4560 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012971317.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:46 Heat of formation + Delta-G solvation = -52.072154 kcal Electronic energy + Delta-G solvation = -17654.980717 eV Core-core repulsion = 14909.324169 eV Total energy + Delta-G solvation = -2745.656549 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.48251 -39.26824 -36.62613 -36.20735 -34.65639 -31.43925 -30.85317 -28.19450 -28.11844 -26.96525 -24.27851 -23.16952 -22.16833 -20.16750 -19.25400 -18.30408 -17.56755 -17.06227 -16.21845 -15.83499 -15.64111 -15.09609 -14.81338 -14.51756 -14.36644 -13.98138 -13.70457 -13.37079 -13.23489 -13.02792 -12.85754 -12.81801 -12.66004 -12.62098 -12.32291 -11.89605 -11.84478 -11.74029 -11.66501 -11.21715 -10.66485 -10.35466 -9.47075 -8.89537 -8.63030 -6.28576 0.81423 1.12483 1.37122 1.44916 1.52401 1.82656 2.19884 2.38316 2.74892 3.65261 3.73245 3.87274 3.96147 4.29530 4.42671 4.47727 4.72105 4.74744 4.83380 4.93797 4.95666 4.97965 5.01846 5.09780 5.17298 5.23716 5.29342 5.36335 5.37241 5.44186 5.67340 5.86809 6.08135 6.10252 6.32981 6.66815 6.75694 6.91198 6.99973 7.45367 8.32420 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.045977 B = 0.004978 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.850102 B = 5622.959440 C = 5970.919867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.078 4.078 3 C -0.137 4.137 4 C -0.136 4.136 5 C 0.499 3.501 6 O -0.583 6.583 7 N -0.641 5.641 8 C 0.003 3.997 9 C -0.101 4.101 10 C -0.184 4.184 11 C 0.074 3.926 12 C -0.495 4.495 13 H 0.083 0.917 14 C 0.030 3.970 15 N -0.830 5.830 16 Si 0.987 3.013 17 H -0.263 1.263 18 H -0.270 1.270 19 H -0.252 1.252 20 C -0.224 4.224 21 C -0.098 4.098 22 H 0.043 0.957 23 H 0.095 0.905 24 H 0.041 0.959 25 H 0.072 0.928 26 H 0.097 0.903 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.416 0.584 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.287 0.713 35 H 0.111 0.889 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.250 8.682 -12.665 15.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.081 4.081 3 C -0.194 4.194 4 C -0.194 4.194 5 C 0.288 3.712 6 O -0.462 6.462 7 N -0.286 5.286 8 C -0.091 4.091 9 C -0.121 4.121 10 C -0.204 4.204 11 C 0.071 3.929 12 C -0.524 4.524 13 H 0.101 0.899 14 C -0.184 4.184 15 N -0.456 5.456 16 Si 0.807 3.193 17 H -0.188 1.188 18 H -0.195 1.195 19 H -0.175 1.175 20 C -0.244 4.244 21 C -0.118 4.118 22 H 0.062 0.938 23 H 0.114 0.886 24 H 0.060 0.940 25 H 0.091 0.909 26 H 0.116 0.884 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.253 0.747 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.129 0.871 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.539 8.294 -12.056 14.643 hybrid contribution 0.085 -0.390 0.960 1.039 sum -0.454 7.904 -11.096 13.631 Atomic orbital electron populations 1.21673 0.92293 1.01817 1.02587 1.20867 0.97834 0.97440 0.91986 1.21891 1.02002 0.91969 1.03571 1.21879 1.02037 0.99811 0.95626 1.21654 0.81909 0.79481 0.88158 1.90676 1.56518 1.50383 1.48649 1.42902 1.07305 1.50376 1.28005 1.17319 0.99265 1.04269 0.88203 1.20572 0.98597 1.00137 0.92798 1.20890 1.00465 1.00876 0.98141 1.18017 0.91637 0.90326 0.92917 1.19852 0.96300 1.30535 1.05743 0.89883 1.26887 0.94342 0.93313 1.03884 1.69953 1.04645 1.35468 1.35569 0.85129 0.79627 0.78470 0.76089 1.18826 1.19455 1.17530 1.20837 1.03666 1.06413 0.93459 1.20429 0.96132 0.96416 0.98817 0.93781 0.88642 0.93989 0.90936 0.88389 0.93419 0.93692 0.88396 0.90932 0.74679 0.88947 0.88757 0.90273 0.87053 0.84721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 7.76 71.98 0.56 -2.42 16 2 C -0.08 -1.81 0.87 -52.93 -0.05 -1.86 16 3 C -0.14 -2.33 8.37 71.98 0.60 -1.73 16 4 C -0.14 -2.40 8.38 71.98 0.60 -1.80 16 5 C 0.50 17.84 6.32 87.66 0.55 18.39 16 6 O -0.58 -27.56 13.42 -3.02 -0.04 -27.60 16 7 N -0.64 -22.13 5.08 -303.11 -1.54 -23.67 16 8 C 0.00 0.13 6.30 38.57 0.24 0.37 16 9 C -0.10 -5.38 8.61 22.14 0.19 -5.18 16 10 C -0.18 -10.60 8.64 22.48 0.19 -10.41 16 11 C 0.07 4.14 5.57 -21.27 -0.12 4.02 16 12 C -0.50 -27.42 9.03 23.39 0.21 -27.21 16 13 H 0.08 4.34 7.91 -2.91 -0.02 4.31 16 14 C 0.03 1.59 5.13 85.24 0.44 2.02 16 15 N -0.83 -46.58 10.98 21.82 0.24 -46.34 16 16 Si 0.99 39.50 29.60 68.60 2.03 41.53 16 17 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 18 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 19 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 20 C -0.22 -10.96 9.74 22.48 0.22 -10.74 16 21 C -0.10 -4.21 9.90 22.13 0.22 -3.99 16 22 H 0.04 1.18 8.10 -2.38 -0.02 1.16 16 23 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.04 1.14 8.10 -2.39 -0.02 1.12 16 25 H 0.07 1.05 7.46 -2.39 -0.02 1.04 16 26 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 1.10 7.69 -2.39 -0.02 1.09 16 31 H 0.42 10.46 7.68 -92.71 -0.71 9.75 16 32 H 0.09 5.07 6.24 -2.91 -0.02 5.06 16 33 H 0.09 5.77 6.19 -2.92 -0.02 5.75 16 34 H 0.29 14.61 8.30 -92.71 -0.77 13.84 16 35 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 36 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -71.50 299.49 4.92 -66.58 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: 0.36 Total: 30.03 kcal Atomic # 6 Polarization: -44.39 SS G_CDS: 3.87 Total: -40.53 kcal Atomic # 7 Polarization: -68.71 SS G_CDS: -1.30 Total: -70.01 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.04 Total: -27.60 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -71.50 4.92 -66.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012971317.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.510 kcal (2) G-P(sol) polarization free energy of solvation -71.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds