Wall clock time and date at job start Sun Mar 29 2020 22:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47514 * 2 1 4 4 C 1.52999 * 109.47020 * 239.99678 * 2 1 3 5 5 C 1.50700 * 109.46832 * 120.00074 * 2 1 3 6 6 C 1.38331 * 119.91934 * 59.99626 * 5 2 1 7 7 C 1.38062 * 120.08257 * 180.29909 * 6 5 2 8 8 C 1.39030 * 119.91759 * 359.47536 * 7 6 5 9 9 N 1.39525 * 120.08198 * 180.23253 * 8 7 6 10 10 C 1.34780 * 119.99992 * 213.68222 * 9 8 7 11 11 O 1.21747 * 119.99907 * 5.27827 * 10 9 8 12 12 C 1.46172 * 120.00404 * 185.27485 * 10 9 8 13 13 H 1.07997 * 119.99402 * 0.02562 * 12 10 9 14 14 C 1.40118 * 119.99944 * 179.97438 * 12 10 9 15 15 N 1.30633 * 120.00150 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99806 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47262 * 60.00081 * 16 14 12 18 18 H 1.48506 * 109.47159 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47146 * 300.00034 * 16 14 12 20 20 C 1.39027 * 119.83352 * 0.52100 * 8 7 6 21 21 C 1.38068 * 119.91194 * 359.73001 * 20 8 7 22 22 H 1.09000 * 109.46645 * 300.00634 * 1 2 3 23 23 H 1.09004 * 109.46333 * 59.99701 * 1 2 3 24 24 H 1.09001 * 109.47498 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47405 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.46778 * 299.99985 * 3 2 1 27 27 H 1.09001 * 109.47232 * 59.99374 * 3 2 1 28 28 H 1.09001 * 109.47197 * 300.00444 * 4 2 1 29 29 H 1.09000 * 109.47505 * 60.00471 * 4 2 1 30 30 H 1.08998 * 109.47112 * 180.02562 * 4 2 1 31 31 H 1.07993 * 119.95441 * 0.02562 * 6 5 2 32 32 H 1.07998 * 120.04049 * 179.69926 * 7 6 5 33 33 H 0.97002 * 120.00338 * 33.68254 * 9 8 7 34 34 H 0.97000 * 120.00282 * 179.97438 * 15 14 12 35 35 H 1.08000 * 120.04285 * 179.70461 * 20 8 7 36 36 H 1.08005 * 119.95314 * 179.97438 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.6970 -2.0348 1.4477 7 6 2.1502 -2.6871 2.5770 8 6 2.9535 -2.0145 3.4909 9 7 3.4174 -2.6719 4.6308 10 6 3.5756 -1.9917 5.7835 11 8 3.2238 -0.8284 5.8571 12 6 4.1694 -2.6505 6.9454 13 1 4.4818 -3.6822 6.8800 14 6 4.3343 -1.9430 8.1436 15 7 3.9569 -0.6949 8.2225 16 14 5.0939 -2.7847 9.6282 17 1 6.4656 -3.2421 9.2899 18 1 5.1562 -1.8275 10.7619 19 1 4.2631 -3.9538 10.0132 20 6 3.2884 -0.6836 3.2691 21 6 2.8271 -0.0364 2.1401 22 1 -0.3632 0.5139 0.8900 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 3.1301 1.4424 -0.0005 26 1 1.6768 1.9562 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.6766 -1.7490 -1.2492 29 1 1.6767 -0.2075 -2.1392 30 1 3.1300 -0.7217 -1.2490 31 1 1.0763 -2.5577 0.7353 32 1 1.8839 -3.7197 2.7483 33 1 3.6260 -3.6185 4.5937 34 1 4.0707 -0.2053 9.0521 35 1 3.9083 -0.1564 3.9793 36 1 3.0866 0.9977 1.9674 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019438802.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:36 Heat of formation + Delta-G solvation = -52.906722 kcal Electronic energy + Delta-G solvation = -17513.086583 eV Core-core repulsion = 14767.393844 eV Total energy + Delta-G solvation = -2745.692738 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.04188 -39.46246 -37.10784 -34.90191 -34.33796 -31.92474 -30.01916 -28.17802 -28.05289 -28.00141 -24.03532 -23.28528 -21.76177 -20.02473 -19.43701 -18.11967 -17.56072 -16.47662 -16.21692 -15.72891 -15.35532 -15.06995 -14.79417 -14.58490 -14.45490 -13.98829 -13.63213 -13.54575 -13.13062 -12.92763 -12.74919 -12.74199 -12.68251 -12.48228 -12.27892 -12.08500 -11.79581 -11.52126 -11.34403 -11.01915 -10.67942 -9.98174 -9.67824 -8.63023 -8.37892 -6.96372 0.55379 0.61212 1.38440 1.42001 1.54121 2.20304 2.36702 2.91497 3.01830 3.57372 3.79791 3.91218 4.17688 4.20756 4.27668 4.48369 4.59717 4.70413 4.86735 4.89416 4.92462 4.96855 5.08386 5.10014 5.14590 5.19584 5.23463 5.28430 5.43647 5.54432 5.56564 5.62645 5.81436 5.85299 6.01490 6.16459 6.45893 6.76109 7.34434 8.34864 8.55815 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.053081 B = 0.004605 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.364311 B = 6078.656137 C = 6350.725473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.023 4.023 3 C -0.145 4.145 4 C -0.133 4.133 5 C -0.106 4.106 6 C -0.089 4.089 7 C -0.167 4.167 8 C 0.149 3.851 9 N -0.695 5.695 10 C 0.528 3.472 11 O -0.608 6.608 12 C -0.568 4.568 13 H 0.093 0.907 14 C 0.029 3.971 15 N -0.815 5.815 16 Si 1.003 2.997 17 H -0.253 1.253 18 H -0.273 1.273 19 H -0.252 1.252 20 C -0.158 4.158 21 C -0.107 4.107 22 H 0.040 0.960 23 H 0.075 0.925 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.075 0.925 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.151 0.849 32 H 0.139 0.861 33 H 0.406 0.594 34 H 0.278 0.722 35 H 0.088 0.912 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.738 -2.756 -15.487 16.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.023 4.023 3 C -0.202 4.202 4 C -0.190 4.190 5 C -0.108 4.108 6 C -0.107 4.107 7 C -0.188 4.188 8 C 0.052 3.948 9 N -0.340 5.340 10 C 0.335 3.665 11 O -0.494 6.494 12 C -0.604 4.604 13 H 0.111 0.889 14 C -0.187 4.187 15 N -0.444 5.444 16 Si 0.821 3.179 17 H -0.177 1.177 18 H -0.198 1.198 19 H -0.176 1.176 20 C -0.179 4.179 21 C -0.125 4.125 22 H 0.059 0.941 23 H 0.094 0.906 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.169 0.831 32 H 0.157 0.843 33 H 0.241 0.759 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.966 -1.783 -15.258 15.865 hybrid contribution 0.600 -0.401 1.210 1.409 sum -3.366 -2.184 -14.048 14.610 Atomic orbital electron populations 1.21884 0.93126 1.02433 1.01857 1.19475 0.96058 0.94880 0.91919 1.21962 1.01001 0.95128 1.02088 1.21857 1.00765 1.00531 0.95838 1.19976 0.99270 0.94481 0.97031 1.20979 0.99186 0.94038 0.96521 1.21120 0.99591 1.01520 0.96519 1.18267 0.95166 0.93279 0.88066 1.43682 1.68522 1.13143 1.08604 1.18762 0.78968 0.86129 0.82689 1.90594 1.55325 1.19284 1.84215 1.21397 1.42816 1.00358 0.95801 0.88910 1.27033 0.93520 0.94894 1.03240 1.70149 1.35649 1.10789 1.27806 0.84994 0.79412 0.78459 0.74991 1.17734 1.19782 1.17633 1.21133 1.03192 0.95472 0.98100 1.21127 0.98201 1.00022 0.93146 0.94080 0.90599 0.91877 0.92773 0.90568 0.93496 0.91845 0.90758 0.93337 0.83096 0.84278 0.75870 0.91234 0.89346 0.85354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 8.29 71.98 0.60 -2.04 16 2 C -0.02 -0.51 0.85 -52.93 -0.05 -0.56 16 3 C -0.14 -3.06 7.13 71.98 0.51 -2.55 16 4 C -0.13 -2.34 8.29 71.98 0.60 -1.75 16 5 C -0.11 -3.19 4.77 -19.82 -0.09 -3.29 16 6 C -0.09 -2.57 8.70 22.25 0.19 -2.38 16 7 C -0.17 -5.73 9.97 22.42 0.22 -5.51 16 8 C 0.15 6.61 6.28 38.30 0.24 6.85 16 9 N -0.70 -33.20 5.32 -307.53 -1.64 -34.83 16 10 C 0.53 31.22 7.47 86.30 0.65 31.87 16 11 O -0.61 -41.09 12.70 -4.50 -0.06 -41.15 16 12 C -0.57 -32.14 9.54 24.79 0.24 -31.90 16 13 H 0.09 4.64 7.85 -2.91 -0.02 4.62 16 14 C 0.03 1.62 5.50 85.33 0.47 2.09 16 15 N -0.82 -49.71 11.82 21.85 0.26 -49.45 16 16 Si 1.00 40.38 29.56 68.60 2.03 42.40 16 17 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 18 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 19 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 20 C -0.16 -7.36 8.65 22.42 0.19 -7.17 16 21 C -0.11 -3.95 8.97 22.25 0.20 -3.75 16 22 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 24 H 0.06 1.13 7.38 -2.39 -0.02 1.11 16 25 H 0.05 1.18 7.51 -2.39 -0.02 1.16 16 26 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.05 1.10 7.51 -2.39 -0.02 1.08 16 28 H 0.06 1.03 7.38 -2.39 -0.02 1.01 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.15 3.22 7.09 -2.91 -0.02 3.20 16 32 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 33 H 0.41 16.28 8.80 -92.71 -0.82 15.47 16 34 H 0.28 15.32 8.29 -92.71 -0.77 14.55 16 35 H 0.09 4.91 6.42 -2.91 -0.02 4.89 16 36 H 0.13 4.33 5.88 -2.91 -0.02 4.31 16 Total: -1.00 -74.99 297.99 4.83 -70.16 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: 0.27 Total: 32.94 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: 3.97 Total: -20.07 kcal Atomic # 7 Polarization: -82.90 SS G_CDS: -1.38 Total: -84.28 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -0.06 Total: -41.15 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.40 kcal Total: -74.99 4.83 -70.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019438802.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.254 kcal (2) G-P(sol) polarization free energy of solvation -74.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds