Wall clock time and date at job start Sun Mar 29 2020 23:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47393 * 2 1 4 4 C 1.46496 * 120.00274 * 264.40884 * 3 2 1 5 5 C 1.50699 * 109.47524 * 269.99788 * 4 3 2 6 6 H 1.08005 * 119.99620 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00468 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99845 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00171 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47049 * 60.00294 * 9 7 5 11 11 H 1.48495 * 109.46865 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46971 * 300.00359 * 9 7 5 13 13 C 1.34780 * 119.99689 * 84.40489 * 3 2 1 14 14 O 1.21553 * 120.00029 * 185.90947 * 13 3 2 15 15 C 1.47847 * 120.00069 * 5.91578 * 13 3 2 16 16 C 1.39592 * 120.14444 * 54.19279 * 15 13 3 17 17 C 1.37943 * 119.84951 * 179.72676 * 16 15 13 18 18 C 1.38376 * 120.14344 * 0.27164 * 17 16 15 19 19 C 1.38337 * 120.29480 * 0.02562 * 18 17 16 20 20 C 1.37970 * 120.14498 * 359.97438 * 19 18 17 21 21 C 1.50703 * 120.07590 * 180.02562 * 20 19 18 22 22 H 1.08998 * 109.46633 * 299.99867 * 1 2 3 23 23 H 1.09001 * 109.47133 * 59.99881 * 1 2 3 24 24 H 1.09000 * 109.47214 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47127 * 240.00061 * 2 1 3 26 26 H 1.09001 * 109.47133 * 120.00119 * 2 1 3 27 27 H 1.09008 * 109.47069 * 30.00094 * 4 3 2 28 28 H 1.09008 * 109.47201 * 149.99811 * 4 3 2 29 29 H 0.97000 * 120.00204 * 179.97438 * 8 7 5 30 30 H 1.08003 * 120.07786 * 359.97438 * 16 15 13 31 31 H 1.08005 * 119.92241 * 180.25451 * 17 16 15 32 32 H 1.08003 * 119.84803 * 179.97438 * 18 17 16 33 33 H 1.08006 * 119.92245 * 179.97438 * 19 18 17 34 34 H 1.09002 * 109.46882 * 85.92530 * 21 20 19 35 35 H 1.08997 * 109.47769 * 205.93208 * 21 20 19 36 36 H 1.09010 * 109.46767 * 325.93291 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3791 2.0306 -1.2626 5 6 3.8360 1.7820 -1.5572 6 1 4.4333 1.1982 -0.8725 7 6 4.4061 2.2989 -2.7012 8 7 3.6786 3.0094 -3.5352 9 14 6.2118 1.9900 -3.0667 10 1 6.4519 0.5287 -3.1750 11 1 6.5774 2.6485 -4.3465 12 1 7.0415 2.5480 -1.9687 13 6 2.1357 2.0544 1.1617 14 8 2.4374 3.2319 1.1540 15 6 1.8977 1.3607 2.4454 16 6 2.5956 0.1908 2.7500 17 6 2.3729 -0.4484 3.9519 18 6 1.4559 0.0646 4.8523 19 6 0.7564 1.2203 4.5540 20 6 0.9698 1.8693 3.3553 21 6 0.2074 3.1285 3.0322 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.7704 1.6211 -2.0688 28 1 2.2025 3.1033 -1.1829 29 1 4.0797 3.3733 -4.3399 30 1 3.3113 -0.2109 2.0479 31 1 2.9152 -1.3514 4.1905 32 1 1.2849 -0.4399 5.7918 33 1 0.0418 1.6152 5.2610 34 1 0.7295 3.9876 3.4535 35 1 0.1348 3.2419 1.9505 36 1 -0.7938 3.0667 3.4590 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454139.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:23 Heat of formation + Delta-G solvation = -15.939654 kcal Electronic energy + Delta-G solvation = -18093.095798 eV Core-core repulsion = 15349.006072 eV Total energy + Delta-G solvation = -2744.089726 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.99065 -37.87358 -35.31120 -32.83855 -32.58246 -31.00593 -30.05456 -27.37316 -26.55419 -23.87868 -23.06634 -22.08019 -21.20995 -18.70372 -16.74254 -16.40823 -15.88768 -15.50971 -15.32562 -14.46457 -14.17246 -13.81922 -13.50057 -13.23020 -13.06684 -12.86163 -12.32004 -12.10345 -11.99570 -11.88550 -11.55128 -11.30974 -11.21611 -10.96438 -10.91013 -10.66343 -10.47622 -10.12826 -9.65018 -9.01229 -8.69767 -8.54767 -8.42357 -7.63713 -6.04193 -4.09419 1.24863 1.45484 3.31752 3.35307 3.36473 3.41453 3.85046 4.03103 4.44866 4.91350 4.95125 5.02103 5.10643 5.29907 5.37058 5.45200 5.55240 5.69934 5.75825 5.82095 5.86545 5.94476 6.03907 6.12571 6.26403 6.34244 6.46650 6.52308 6.53851 6.68141 7.00963 7.10953 7.45472 7.55607 7.92300 8.23188 8.41863 8.88463 9.07272 9.55717 11.03733 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.028609 B = 0.006344 C = 0.006175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.475097 B = 4412.851123 C = 4533.416258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.098 3.902 3 N -0.590 5.590 4 C 0.245 3.755 5 C -0.529 4.529 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.550 3.450 14 O -0.534 6.534 15 C -0.110 4.110 16 C -0.087 4.087 17 C -0.133 4.133 18 C -0.109 4.109 19 C -0.129 4.129 20 C -0.045 4.045 21 C -0.116 4.116 22 H 0.050 0.950 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.033 0.967 28 H 0.045 0.955 29 H 0.264 0.736 30 H 0.130 0.870 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.215 -7.964 13.281 17.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.025 4.025 3 N -0.321 5.321 4 C 0.126 3.874 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.337 3.663 14 O -0.412 6.412 15 C -0.113 4.113 16 C -0.106 4.106 17 C -0.151 4.151 18 C -0.127 4.127 19 C -0.147 4.147 20 C -0.046 4.046 21 C -0.172 4.172 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.101 0.899 26 H 0.090 0.910 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.148 0.852 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.046 -7.226 13.037 16.487 hybrid contribution 1.085 -0.291 -0.297 1.162 sum -5.961 -7.517 12.740 15.949 Atomic orbital electron populations 1.22188 0.96812 1.01355 1.02133 1.21619 0.93621 0.84268 1.03040 1.48206 1.62593 1.13192 1.08095 1.19309 0.95355 0.94472 0.78217 1.21404 0.95227 1.33648 1.06480 0.92526 1.24928 0.98219 0.94893 0.95974 1.69923 1.36217 1.34813 1.12333 0.86560 0.84986 0.78324 0.77574 1.20228 1.21135 1.20182 1.18159 0.78171 0.86523 0.83486 1.90753 1.48020 1.15400 1.87040 1.20162 0.98749 0.96238 0.96168 1.21299 0.98670 0.93623 0.96990 1.21030 0.99296 1.00556 0.94174 1.21179 0.96288 0.96097 0.99150 1.20923 1.01059 0.96283 0.96401 1.19924 0.95308 0.96243 0.93112 1.20830 0.98453 0.94690 1.03231 0.93062 0.92248 0.92247 0.89903 0.91042 0.94906 0.93713 0.92639 0.85241 0.85867 0.86141 0.85909 0.90497 0.91015 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 10.20 37.16 0.38 -2.05 16 2 C 0.10 1.68 5.89 -4.04 -0.02 1.66 16 3 N -0.59 -12.88 2.47 -176.17 -0.43 -13.31 16 4 C 0.25 6.50 5.18 -5.20 -0.03 6.47 16 5 C -0.53 -15.08 9.39 -34.44 -0.32 -15.40 16 6 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 9 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.55 12.10 6.01 -12.33 -0.07 12.02 16 14 O -0.53 -13.90 15.56 5.32 0.08 -13.81 16 15 C -0.11 -1.93 4.86 -104.97 -0.51 -2.44 16 16 C -0.09 -1.32 7.61 -39.18 -0.30 -1.61 16 17 C -0.13 -1.60 10.03 -39.64 -0.40 -2.00 16 18 C -0.11 -1.22 10.04 -39.49 -0.40 -1.62 16 19 C -0.13 -1.58 9.70 -39.64 -0.38 -1.97 16 20 C -0.05 -0.69 5.91 -104.23 -0.62 -1.30 16 21 C -0.12 -1.69 9.24 36.01 0.33 -1.36 16 22 H 0.05 0.75 8.02 -51.93 -0.42 0.34 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.08 1.43 8.03 -51.93 -0.42 1.02 16 26 H 0.07 1.08 4.48 -51.93 -0.23 0.85 16 27 H 0.03 0.88 8.07 -51.92 -0.42 0.46 16 28 H 0.04 1.33 7.35 -51.92 -0.38 0.95 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.13 1.94 7.31 -52.48 -0.38 1.55 16 31 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 32 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 33 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.22 6.64 -51.93 -0.35 0.88 16 36 H 0.06 0.72 8.11 -51.92 -0.42 0.30 16 LS Contribution 304.42 15.07 4.59 4.59 Total: -1.00 -32.68 304.42 -7.58 -40.27 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -5.10 Total: -0.78 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -2.44 Total: -7.92 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.30 Total: -39.24 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.08 Total: -13.81 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.68 -7.58 -40.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454139.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.327 kcal (2) G-P(sol) polarization free energy of solvation -32.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds