Wall clock time and date at job start Sun Mar 29 2020 22:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52994 * 109.46824 * 2 1 4 4 C 1.50697 * 109.46977 * 119.99988 * 2 1 3 5 5 C 1.38129 * 120.04031 * 305.00906 * 4 2 1 6 6 C 1.38259 * 120.07206 * 179.72538 * 5 4 2 7 7 C 1.38299 * 120.14043 * 0.27808 * 6 5 4 8 8 C 1.38089 * 120.07245 * 359.97438 * 7 6 5 9 9 C 1.38858 * 120.03206 * 125.26808 * 4 2 1 10 10 N 1.39931 * 120.06968 * 359.97438 * 9 4 2 11 11 C 1.34779 * 119.99797 * 205.14695 * 10 9 4 12 12 O 1.21287 * 120.00017 * 5.50631 * 11 10 9 13 13 C 1.50698 * 119.99673 * 185.50537 * 11 10 9 14 14 C 1.50696 * 109.46882 * 179.97438 * 13 11 10 15 15 H 1.08004 * 120.00264 * 0.02562 * 14 13 11 16 16 C 1.37884 * 119.99944 * 180.02562 * 14 13 11 17 17 N 1.31506 * 120.00032 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99753 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47161 * 60.00328 * 18 16 14 20 20 H 1.48507 * 109.46571 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47357 * 299.99793 * 18 16 14 22 22 H 1.08998 * 109.46637 * 299.99830 * 1 2 3 23 23 H 1.08993 * 109.47197 * 59.99850 * 1 2 3 24 24 H 1.09005 * 109.46649 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46637 * 240.00170 * 2 1 3 26 26 H 1.08997 * 109.47304 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.47434 * 300.00223 * 3 2 1 28 28 H 1.09004 * 109.47545 * 60.00229 * 3 2 1 29 29 H 1.08001 * 119.96358 * 0.02562 * 5 4 2 30 30 H 1.07998 * 119.93144 * 180.25492 * 6 5 4 31 31 H 1.07998 * 119.96650 * 179.97438 * 7 6 5 32 32 H 1.08004 * 120.03685 * 179.97438 * 8 7 6 33 33 H 0.96998 * 119.99852 * 25.15557 * 10 9 4 34 34 H 1.08991 * 109.47280 * 300.00506 * 13 11 10 35 35 H 1.09004 * 109.46844 * 60.00583 * 13 11 10 36 36 H 0.97002 * 120.00274 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6161 -0.3025 2.4828 6 6 2.0721 -0.9574 3.6118 7 6 2.9505 -2.0188 3.4917 8 6 3.3746 -2.4282 2.2429 9 6 2.9185 -1.7723 1.1068 10 7 3.3460 -2.1849 -0.1602 11 6 3.7622 -3.4525 -0.3512 12 8 3.6729 -4.2621 0.5475 13 6 4.3386 -3.8638 -1.6815 14 6 4.7243 -5.3198 -1.6332 15 1 4.5673 -5.8904 -0.7297 16 6 5.2776 -5.9236 -2.7425 17 7 5.4692 -5.2287 -3.8424 18 14 5.7549 -7.7285 -2.6828 19 1 4.5524 -8.5492 -2.3900 20 1 6.3242 -8.1335 -3.9933 21 1 6.7683 -7.9376 -1.6176 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 0.9299 0.5258 2.5798 30 1 1.7419 -0.6393 4.5896 31 1 3.3052 -2.5281 4.3755 32 1 4.0609 -3.2569 2.1499 33 1 3.3428 -1.5586 -0.9008 34 1 3.5945 -3.7103 -2.4629 35 1 5.2213 -3.2615 -1.8968 36 1 5.8581 -5.6535 -4.6229 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049816045.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:53 Heat of formation + Delta-G solvation = -27.873233 kcal Electronic energy + Delta-G solvation = -17565.517237 eV Core-core repulsion = 14820.910032 eV Total energy + Delta-G solvation = -2744.607205 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.25329 -38.17006 -35.31661 -34.11524 -33.01382 -30.06053 -29.51811 -28.16991 -27.17815 -24.00410 -23.51368 -21.89855 -19.86866 -19.65056 -17.59648 -16.52418 -15.84831 -15.55665 -14.99745 -14.50990 -14.43001 -14.04669 -13.62402 -13.54451 -13.39744 -12.86642 -12.46834 -12.17042 -12.10594 -11.98987 -11.63560 -11.32573 -11.16123 -10.85870 -10.70765 -10.65384 -10.61794 -10.01155 -9.96808 -9.36806 -8.78186 -8.48492 -8.46096 -7.61914 -6.11317 -4.11743 1.56316 1.67371 3.34704 3.37029 3.41812 3.47013 3.70334 4.11858 4.44456 4.70038 4.80998 5.17276 5.21726 5.27104 5.27895 5.36302 5.52176 5.57067 5.71604 5.77135 5.87926 5.89410 5.95890 6.09438 6.20334 6.21192 6.35796 6.61491 6.73054 6.80548 6.90305 7.07639 7.21241 7.41436 7.86453 7.92760 8.27374 8.96931 9.00182 9.53544 11.00914 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.030496 B = 0.005323 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.923772 B = 5258.793824 C = 5917.742257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.056 4.056 3 C -0.142 4.142 4 C -0.121 4.121 5 C -0.097 4.097 6 C -0.153 4.153 7 C -0.104 4.104 8 C -0.135 4.135 9 C 0.169 3.831 10 N -0.687 5.687 11 C 0.513 3.487 12 O -0.520 6.520 13 C 0.006 3.994 14 C -0.512 4.512 15 H 0.075 0.925 16 C 0.057 3.943 17 N -0.900 5.900 18 Si 0.904 3.096 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.275 1.275 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.147 0.853 33 H 0.406 0.594 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.417 13.259 8.551 17.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.074 4.074 3 C -0.200 4.200 4 C -0.124 4.124 5 C -0.115 4.115 6 C -0.172 4.172 7 C -0.123 4.123 8 C -0.155 4.155 9 C 0.073 3.927 10 N -0.332 5.332 11 C 0.305 3.695 12 O -0.395 6.395 13 C -0.033 4.033 14 C -0.550 4.550 15 H 0.094 0.906 16 C -0.145 4.145 17 N -0.539 5.539 18 Si 0.731 3.269 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.201 1.201 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.137 0.863 32 H 0.165 0.835 33 H 0.243 0.757 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.348 12.580 8.919 17.082 hybrid contribution 0.254 -0.598 -0.433 0.781 sum -7.094 11.983 8.485 16.307 Atomic orbital electron populations 1.21827 0.94315 1.02103 1.01565 1.20008 0.96143 0.95747 0.95534 1.21855 1.01272 0.95125 1.01702 1.19531 0.98813 0.98721 0.95340 1.20646 0.99820 0.99633 0.91429 1.20964 1.00381 0.97766 0.98080 1.21017 0.97613 0.96607 0.97019 1.21517 1.01628 1.01598 0.90745 1.17836 0.94264 0.94679 0.85950 1.44244 1.65513 1.13974 1.09457 1.22318 0.75227 0.79263 0.92733 1.90505 1.53068 1.50828 1.45077 1.19277 0.97296 0.99111 0.87591 1.21088 1.40745 0.93783 0.99435 0.90642 1.25000 0.95562 0.98714 0.95190 1.69940 1.44610 1.36606 1.02740 0.86457 0.78954 0.84437 0.77025 1.20079 1.21300 1.20072 0.92567 0.92506 0.92474 0.90711 0.92536 0.92459 0.92536 0.86414 0.86681 0.86290 0.83524 0.75735 0.93170 0.93003 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.95 37.16 0.33 -1.13 16 2 C -0.06 -0.65 2.98 -91.77 -0.27 -0.92 16 3 C -0.14 -1.38 9.05 37.15 0.34 -1.04 16 4 C -0.12 -1.70 4.80 -104.43 -0.50 -2.20 16 5 C -0.10 -1.22 8.75 -39.61 -0.35 -1.57 16 6 C -0.15 -1.95 10.04 -39.55 -0.40 -2.35 16 7 C -0.10 -1.52 10.04 -39.61 -0.40 -1.91 16 8 C -0.13 -2.39 8.72 -39.39 -0.34 -2.73 16 9 C 0.17 2.88 6.41 -83.69 -0.54 2.35 16 10 N -0.69 -12.26 5.05 -9.86 -0.05 -12.31 16 11 C 0.51 11.51 7.63 -10.98 -0.08 11.42 16 12 O -0.52 -13.12 12.62 5.55 0.07 -13.05 16 13 C 0.01 0.16 5.46 -29.04 -0.16 0.00 16 14 C -0.51 -14.60 8.92 -34.44 -0.31 -14.90 16 15 H 0.08 2.23 6.75 -52.48 -0.35 1.88 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -25.99 13.29 55.43 0.74 -25.25 16 18 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H 0.06 0.52 7.13 -51.93 -0.37 0.15 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.90 5.98 -51.93 -0.31 0.59 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.51 7.70 -51.93 -0.40 0.11 16 29 H 0.12 1.20 7.10 -52.49 -0.37 0.82 16 30 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.15 2.96 5.79 -52.48 -0.30 2.66 16 33 H 0.41 6.11 6.91 -40.82 -0.28 5.83 16 34 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.05 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 299.68 15.07 4.52 4.52 Total: -1.00 -31.15 299.68 -7.43 -38.58 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -4.91 Total: 4.11 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -2.77 Total: -13.48 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.69 Total: -37.57 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.07 Total: -13.05 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.15 -7.43 -38.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049816045.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.710 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds