Wall clock time and date at job start Sun Mar 29 2020 22:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52994 * 109.46824 * 2 1 4 4 C 1.50697 * 109.46977 * 119.99988 * 2 1 3 5 5 C 1.38129 * 120.04031 * 305.00906 * 4 2 1 6 6 C 1.38259 * 120.07206 * 179.72538 * 5 4 2 7 7 C 1.38299 * 120.14043 * 0.27808 * 6 5 4 8 8 C 1.38089 * 120.07245 * 359.97438 * 7 6 5 9 9 C 1.38858 * 120.03206 * 125.26808 * 4 2 1 10 10 N 1.39931 * 120.06968 * 359.97438 * 9 4 2 11 11 C 1.34779 * 119.99797 * 205.14695 * 10 9 4 12 12 O 1.21287 * 120.00017 * 5.50631 * 11 10 9 13 13 C 1.50698 * 119.99673 * 185.50537 * 11 10 9 14 14 C 1.50696 * 109.46882 * 179.97438 * 13 11 10 15 15 H 1.08004 * 120.00264 * 0.02562 * 14 13 11 16 16 C 1.37884 * 119.99944 * 180.02562 * 14 13 11 17 17 N 1.31506 * 120.00032 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99753 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47161 * 60.00328 * 18 16 14 20 20 H 1.48507 * 109.46571 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47357 * 299.99793 * 18 16 14 22 22 H 1.08998 * 109.46637 * 299.99830 * 1 2 3 23 23 H 1.08993 * 109.47197 * 59.99850 * 1 2 3 24 24 H 1.09005 * 109.46649 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46637 * 240.00170 * 2 1 3 26 26 H 1.08997 * 109.47304 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.47434 * 300.00223 * 3 2 1 28 28 H 1.09004 * 109.47545 * 60.00229 * 3 2 1 29 29 H 1.08001 * 119.96358 * 0.02562 * 5 4 2 30 30 H 1.07998 * 119.93144 * 180.25492 * 6 5 4 31 31 H 1.07998 * 119.96650 * 179.97438 * 7 6 5 32 32 H 1.08004 * 120.03685 * 179.97438 * 8 7 6 33 33 H 0.96998 * 119.99852 * 25.15557 * 10 9 4 34 34 H 1.08991 * 109.47280 * 300.00506 * 13 11 10 35 35 H 1.09004 * 109.46844 * 60.00583 * 13 11 10 36 36 H 0.97002 * 120.00274 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6161 -0.3025 2.4828 6 6 2.0721 -0.9574 3.6118 7 6 2.9505 -2.0188 3.4917 8 6 3.3746 -2.4282 2.2429 9 6 2.9185 -1.7723 1.1068 10 7 3.3460 -2.1849 -0.1602 11 6 3.7622 -3.4525 -0.3512 12 8 3.6729 -4.2621 0.5475 13 6 4.3386 -3.8638 -1.6815 14 6 4.7243 -5.3198 -1.6332 15 1 4.5673 -5.8904 -0.7297 16 6 5.2776 -5.9236 -2.7425 17 7 5.4692 -5.2287 -3.8424 18 14 5.7549 -7.7285 -2.6828 19 1 4.5524 -8.5492 -2.3900 20 1 6.3242 -8.1335 -3.9933 21 1 6.7683 -7.9376 -1.6176 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 0.9299 0.5258 2.5798 30 1 1.7419 -0.6393 4.5896 31 1 3.3052 -2.5281 4.3755 32 1 4.0609 -3.2569 2.1499 33 1 3.3428 -1.5586 -0.9008 34 1 3.5945 -3.7103 -2.4629 35 1 5.2213 -3.2615 -1.8968 36 1 5.8581 -5.6535 -4.6229 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049816045.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:53 Heat of formation + Delta-G solvation = -46.068781 kcal Electronic energy + Delta-G solvation = -17566.306255 eV Core-core repulsion = 14820.910032 eV Total energy + Delta-G solvation = -2745.396223 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.64286 -39.64407 -36.30819 -35.61856 -35.14862 -31.70162 -30.71273 -29.74959 -27.94820 -25.94707 -24.62472 -23.27232 -21.26196 -20.87515 -18.97180 -18.51023 -17.58232 -16.87234 -16.40689 -16.31878 -15.82326 -15.22696 -14.80223 -14.64079 -14.54532 -14.44241 -14.21076 -13.52898 -13.24997 -12.96133 -12.90514 -12.82958 -12.70178 -12.58715 -12.06309 -12.02531 -11.73500 -11.56440 -11.51694 -11.33251 -10.65650 -10.49665 -9.63228 -8.92157 -8.28643 -6.36554 0.38228 0.49952 1.39144 1.41751 1.50378 1.77661 2.18549 2.43663 2.92426 3.07144 3.72160 3.87182 4.05887 4.28807 4.32165 4.33370 4.43797 4.55415 4.63462 4.81596 4.86185 4.97229 5.00226 5.02308 5.10721 5.17129 5.23484 5.32182 5.42948 5.46501 5.58660 5.63624 5.66897 5.72253 5.99443 6.18311 6.55722 6.76216 7.24745 7.36116 8.83316 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.030496 B = 0.005323 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.923772 B = 5258.793824 C = 5917.742257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.059 4.059 3 C -0.138 4.138 4 C -0.113 4.113 5 C -0.094 4.094 6 C -0.139 4.139 7 C -0.112 4.112 8 C -0.163 4.163 9 C 0.132 3.868 10 N -0.669 5.669 11 C 0.517 3.483 12 O -0.556 6.556 13 C 0.011 3.989 14 C -0.540 4.540 15 H 0.056 0.944 16 C 0.013 3.987 17 N -0.923 5.923 18 Si 0.965 3.035 19 H -0.273 1.273 20 H -0.273 1.273 21 H -0.272 1.272 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.154 0.846 30 H 0.153 0.847 31 H 0.135 0.865 32 H 0.111 0.889 33 H 0.418 0.582 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.773 15.021 9.488 19.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.078 4.078 3 C -0.195 4.195 4 C -0.115 4.115 5 C -0.112 4.112 6 C -0.157 4.157 7 C -0.131 4.131 8 C -0.184 4.184 9 C 0.037 3.963 10 N -0.315 5.315 11 C 0.308 3.692 12 O -0.433 6.433 13 C -0.028 4.028 14 C -0.578 4.578 15 H 0.074 0.926 16 C -0.187 4.187 17 N -0.562 5.562 18 Si 0.790 3.210 19 H -0.198 1.198 20 H -0.198 1.198 21 H -0.198 1.198 22 H 0.092 0.908 23 H 0.091 0.909 24 H 0.057 0.943 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.172 0.828 30 H 0.170 0.830 31 H 0.153 0.847 32 H 0.129 0.871 33 H 0.257 0.743 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.717 14.398 9.857 19.505 hybrid contribution 0.622 -1.031 -0.651 1.369 sum -8.095 13.367 9.205 18.137 Atomic orbital electron populations 1.21819 0.93008 1.01440 1.03262 1.20107 0.97162 0.96667 0.93868 1.21826 1.00735 0.93702 1.03205 1.19848 0.97198 0.97190 0.97279 1.21103 0.99521 1.00089 0.90469 1.21410 0.98318 0.96005 0.99982 1.21243 0.98080 0.97533 0.96197 1.21407 1.02548 1.01665 0.92766 1.18064 0.96638 0.96723 0.84830 1.43802 1.64496 1.12484 1.10734 1.21750 0.75487 0.80590 0.91383 1.90493 1.54861 1.52303 1.45656 1.19093 0.97063 0.97605 0.89078 1.21301 1.41806 0.95591 0.99130 0.92554 1.25775 0.95192 1.02990 0.94696 1.70012 1.44762 1.38249 1.03181 0.85497 0.78669 0.79258 0.77592 1.19785 1.19757 1.19770 0.90823 0.90936 0.94287 0.91902 0.93402 0.90927 0.91096 0.82800 0.82953 0.84676 0.87140 0.74305 0.93564 0.93577 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.95 71.99 0.64 -1.83 16 2 C -0.06 -1.25 2.98 -11.54 -0.03 -1.29 16 3 C -0.14 -2.25 9.05 71.98 0.65 -1.60 16 4 C -0.11 -2.96 4.80 -19.74 -0.09 -3.06 16 5 C -0.09 -2.02 8.75 22.25 0.19 -1.82 16 6 C -0.14 -3.06 10.04 22.29 0.22 -2.84 16 7 C -0.11 -3.16 10.04 22.25 0.22 -2.94 16 8 C -0.16 -5.99 8.72 22.39 0.20 -5.80 16 9 C 0.13 4.58 6.41 38.15 0.24 4.82 16 10 N -0.67 -24.84 5.05 -303.49 -1.53 -26.37 16 11 C 0.52 24.45 7.63 87.66 0.67 25.12 16 12 O -0.56 -29.76 12.62 -3.05 -0.04 -29.80 16 13 C 0.01 0.57 5.46 29.10 0.16 0.73 16 14 C -0.54 -31.94 8.92 25.60 0.23 -31.71 16 15 H 0.06 3.49 6.75 -2.91 -0.02 3.47 16 16 C 0.01 0.72 5.46 84.66 0.46 1.18 16 17 N -0.92 -53.86 13.29 21.45 0.28 -53.58 16 18 Si 0.97 45.39 29.54 68.60 2.03 47.42 16 19 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 21 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 22 H 0.07 1.06 7.13 -2.39 -0.02 1.04 16 23 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 25 H 0.06 1.46 5.98 -2.39 -0.01 1.45 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.07 0.96 7.70 -2.38 -0.02 0.95 16 29 H 0.15 2.25 7.10 -2.91 -0.02 2.23 16 30 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 31 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 32 H 0.11 4.83 5.79 -2.91 -0.02 4.81 16 33 H 0.42 12.97 6.91 -92.71 -0.64 12.33 16 34 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.05 2.41 8.14 -2.38 -0.02 2.40 16 36 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -69.38 299.68 4.95 -64.43 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.44 Total: 18.93 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: 3.77 Total: -21.03 kcal Atomic # 7 Polarization: -78.70 SS G_CDS: -1.25 Total: -79.95 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.04 Total: -29.80 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -69.38 4.95 -64.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049816045.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.365 kcal (2) G-P(sol) polarization free energy of solvation -69.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds