Wall clock time and date at job start Sun Mar 29 2020 22:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.08007 * 119.99884 * 114.30746 * 5 3 2 7 7 C 1.37876 * 120.00513 * 294.30890 * 5 3 2 8 8 N 1.31509 * 120.00760 * 153.95370 * 7 5 3 9 9 Si 1.86803 * 119.99588 * 333.95194 * 7 5 3 10 10 H 1.48501 * 109.47184 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47436 * 299.99993 * 9 7 5 12 12 H 1.48504 * 109.47124 * 60.00159 * 9 7 5 13 13 N 1.46495 * 109.47062 * 294.28295 * 3 2 1 14 14 C 1.34772 * 120.00313 * 85.00200 * 13 3 2 15 15 O 1.21555 * 120.00020 * 359.97438 * 14 13 3 16 16 C 1.47849 * 120.00163 * 179.97438 * 14 13 3 17 17 C 1.39592 * 120.14197 * 359.72136 * 16 14 13 18 18 C 1.37938 * 119.85141 * 179.78701 * 17 16 14 19 19 C 1.38380 * 120.14343 * 0.49079 * 18 17 16 20 20 C 1.38336 * 120.29409 * 359.74338 * 19 18 17 21 21 C 1.50699 * 119.92979 * 180.02562 * 20 19 18 22 22 C 1.37982 * 120.14510 * 0.02562 * 20 19 18 23 23 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 25 25 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 26 26 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 27 27 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 28 28 H 0.97007 * 119.99209 * 354.96251 * 8 7 5 29 29 H 0.97005 * 120.00069 * 264.99241 * 13 3 2 30 30 H 1.08002 * 120.07576 * 0.02562 * 17 16 14 31 31 H 1.08000 * 119.93215 * 180.23614 * 18 17 16 32 32 H 1.08000 * 119.85809 * 179.76375 * 19 18 17 33 33 H 1.09005 * 109.47152 * 270.02213 * 21 20 19 34 34 H 1.08999 * 109.47495 * 30.01715 * 21 20 19 35 35 H 1.09002 * 109.47420 * 150.01746 * 21 20 19 36 36 H 1.08001 * 120.07552 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1586 1.8024 -0.6686 7 6 4.1236 0.9911 1.3055 8 7 5.3469 0.5087 1.2833 9 14 3.1765 1.0613 2.9140 10 1 4.0191 0.5167 4.0089 11 1 2.8199 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6671 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3362 2.6299 -0.4654 16 6 0.0753 3.3148 -2.6613 17 6 0.9794 3.3545 -3.7241 18 6 0.6208 3.9644 -4.9082 19 6 -0.6284 4.5449 -5.0404 20 6 -1.5273 4.5132 -3.9893 21 6 -2.8857 5.1475 -4.1424 22 6 -1.1828 3.9022 -2.8011 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 5.8117 0.4042 0.4383 29 1 2.2954 2.1150 -1.9977 30 1 1.9562 2.9054 -3.6209 31 1 1.3179 3.9926 -5.7326 32 1 -0.9030 5.0245 -5.9682 33 1 -2.8367 6.1909 -3.8309 34 1 -3.1962 5.0941 -5.1858 35 1 -3.6069 4.6163 -3.5211 36 1 -1.8857 3.8778 -1.9814 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178002.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:30 Heat of formation + Delta-G solvation = -28.526635 kcal Electronic energy + Delta-G solvation = -17700.729171 eV Core-core repulsion = 14956.093633 eV Total energy + Delta-G solvation = -2744.635538 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.91805 -38.27393 -35.22489 -33.20312 -32.31087 -31.50382 -30.66046 -27.42102 -26.74495 -23.77122 -22.29572 -21.76563 -20.32019 -19.45331 -17.95524 -16.91372 -15.98194 -15.59003 -14.97136 -14.62651 -14.36185 -13.81742 -13.62424 -13.38389 -13.04272 -12.55854 -12.53460 -12.38243 -12.29356 -11.91093 -11.60133 -11.55383 -11.05699 -10.79938 -10.69113 -10.42293 -9.85480 -9.78886 -9.27222 -9.16568 -8.90016 -8.72738 -8.25489 -8.07383 -6.61770 -4.20569 0.99467 1.35640 3.23479 3.41678 3.46559 3.62198 3.94807 4.09461 4.44437 4.73481 4.81216 4.96058 5.07919 5.18804 5.29379 5.35596 5.47171 5.63727 5.68010 5.94113 6.02529 6.09588 6.11334 6.29044 6.38418 6.42226 6.50297 6.71797 6.81173 6.91154 6.97232 7.07024 7.37828 7.42110 7.67994 8.24175 8.47810 8.69983 8.96898 9.44099 10.76237 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.035199 B = 0.005649 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.276483 B = 4955.139612 C = 5316.828033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.131 4.131 3 C 0.250 3.750 4 H 0.042 0.958 5 C -0.630 4.630 6 H 0.062 0.938 7 C 0.050 3.950 8 N -0.886 5.886 9 Si 1.029 2.971 10 H -0.283 1.283 11 H -0.280 1.280 12 H -0.273 1.273 13 N -0.695 5.695 14 C 0.541 3.459 15 O -0.547 6.547 16 C -0.119 4.119 17 C -0.094 4.094 18 C -0.125 4.125 19 C -0.106 4.106 20 C -0.099 4.099 21 C -0.112 4.112 22 C -0.066 4.066 23 H 0.030 0.970 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.565 6.238 -12.025 17.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C 0.146 3.854 4 H 0.059 0.941 5 C -0.667 4.667 6 H 0.080 0.920 7 C -0.159 4.159 8 N -0.517 5.517 9 Si 0.856 3.144 10 H -0.208 1.208 11 H -0.207 1.207 12 H -0.199 1.199 13 N -0.342 5.342 14 C 0.327 3.673 15 O -0.428 6.428 16 C -0.122 4.122 17 C -0.113 4.113 18 C -0.143 4.143 19 C -0.124 4.124 20 C -0.100 4.100 21 C -0.169 4.169 22 C -0.085 4.085 23 H 0.049 0.951 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.226 0.774 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.930 5.891 -9.703 16.467 hybrid contribution 0.370 0.291 -2.120 2.172 sum -11.559 6.183 -11.822 17.653 Atomic orbital electron populations 1.21901 0.97408 0.98874 1.02007 1.22227 0.93709 0.99646 1.01406 1.19047 0.95840 0.88526 0.81938 0.94074 1.21972 0.89664 1.50131 1.04910 0.91958 1.25598 0.96591 0.91612 1.02064 1.70877 1.13892 1.36410 1.30544 0.84231 0.76065 0.77674 0.76434 1.20829 1.20652 1.19885 1.46232 1.14291 1.55499 1.18190 1.18243 0.82870 0.79183 0.86959 1.90720 1.50857 1.60265 1.40915 1.20278 0.95531 1.01416 0.94981 1.21398 0.99046 0.98099 0.92769 1.21062 0.96736 0.98885 0.97595 1.21159 0.93720 0.99151 0.98393 1.19882 0.96798 0.99435 0.93836 1.20777 0.93119 1.00566 1.02425 1.21172 0.95503 0.94781 0.97017 0.95082 0.92979 0.93264 0.93167 0.91800 0.91880 0.77416 0.85494 0.85642 0.85998 0.91159 0.91606 0.91364 0.84801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.53 37.16 0.32 -2.69 16 2 C -0.13 -2.99 5.37 -26.73 -0.14 -3.13 16 3 C 0.25 6.06 1.84 -69.08 -0.13 5.93 16 4 H 0.04 1.09 6.12 -51.93 -0.32 0.77 16 5 C -0.63 -17.03 8.92 -34.44 -0.31 -17.34 16 6 H 0.06 1.75 7.96 -52.48 -0.42 1.34 16 7 C 0.05 1.39 5.15 -17.82 -0.09 1.30 16 8 N -0.89 -26.10 13.70 55.43 0.76 -25.34 16 9 Si 1.03 25.10 26.56 -169.99 -4.51 20.59 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -6.33 6.34 56.52 0.36 -5.97 16 13 N -0.69 -14.46 4.98 -55.88 -0.28 -14.73 16 14 C 0.54 10.87 6.38 -12.33 -0.08 10.79 16 15 O -0.55 -12.45 13.48 5.32 0.07 -12.37 16 16 C -0.12 -1.94 5.87 -104.97 -0.62 -2.56 16 17 C -0.09 -1.30 9.54 -39.19 -0.37 -1.67 16 18 C -0.12 -1.42 10.03 -39.64 -0.40 -1.82 16 19 C -0.11 -1.14 9.69 -39.49 -0.38 -1.52 16 20 C -0.10 -1.18 5.87 -104.68 -0.61 -1.79 16 21 C -0.11 -0.98 10.01 36.01 0.36 -0.62 16 22 C -0.07 -0.96 9.24 -39.18 -0.36 -1.33 16 23 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 1.13 7.89 -51.93 -0.41 0.72 16 25 H 0.05 1.02 5.63 -51.93 -0.29 0.73 16 26 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.06 1.52 5.77 -51.93 -0.30 1.22 16 28 H 0.27 7.88 8.73 -40.82 -0.36 7.53 16 29 H 0.39 7.29 6.56 -40.82 -0.27 7.02 16 30 H 0.13 1.61 6.41 -52.49 -0.34 1.28 16 31 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 36 H 0.13 1.99 7.65 -52.49 -0.40 1.59 16 LS Contribution 295.14 15.07 4.45 4.45 Total: -1.00 -30.78 295.14 -7.22 -38.00 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -4.89 Total: 5.86 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -2.82 Total: -16.44 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.48 Total: -40.08 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.07 Total: -12.37 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -4.51 Total: 20.59 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.78 -7.22 -38.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178002.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.477 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds