Wall clock time and date at job start Sun Mar 29 2020 22:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.08007 * 119.99884 * 114.30746 * 5 3 2 7 7 C 1.37876 * 120.00513 * 294.30890 * 5 3 2 8 8 N 1.31509 * 120.00760 * 153.95370 * 7 5 3 9 9 Si 1.86803 * 119.99588 * 333.95194 * 7 5 3 10 10 H 1.48501 * 109.47184 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47436 * 299.99993 * 9 7 5 12 12 H 1.48504 * 109.47124 * 60.00159 * 9 7 5 13 13 N 1.46495 * 109.47062 * 294.28295 * 3 2 1 14 14 C 1.34772 * 120.00313 * 85.00200 * 13 3 2 15 15 O 1.21555 * 120.00020 * 359.97438 * 14 13 3 16 16 C 1.47849 * 120.00163 * 179.97438 * 14 13 3 17 17 C 1.39592 * 120.14197 * 359.72136 * 16 14 13 18 18 C 1.37938 * 119.85141 * 179.78701 * 17 16 14 19 19 C 1.38380 * 120.14343 * 0.49079 * 18 17 16 20 20 C 1.38336 * 120.29409 * 359.74338 * 19 18 17 21 21 C 1.50699 * 119.92979 * 180.02562 * 20 19 18 22 22 C 1.37982 * 120.14510 * 0.02562 * 20 19 18 23 23 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 25 25 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 26 26 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 27 27 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 28 28 H 0.97007 * 119.99209 * 354.96251 * 8 7 5 29 29 H 0.97005 * 120.00069 * 264.99241 * 13 3 2 30 30 H 1.08002 * 120.07576 * 0.02562 * 17 16 14 31 31 H 1.08000 * 119.93215 * 180.23614 * 18 17 16 32 32 H 1.08000 * 119.85809 * 179.76375 * 19 18 17 33 33 H 1.09005 * 109.47152 * 270.02213 * 21 20 19 34 34 H 1.08999 * 109.47495 * 30.01715 * 21 20 19 35 35 H 1.09002 * 109.47420 * 150.01746 * 21 20 19 36 36 H 1.08001 * 120.07552 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1586 1.8024 -0.6686 7 6 4.1236 0.9911 1.3055 8 7 5.3469 0.5087 1.2833 9 14 3.1765 1.0613 2.9140 10 1 4.0191 0.5167 4.0089 11 1 2.8199 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6671 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3362 2.6299 -0.4654 16 6 0.0753 3.3148 -2.6613 17 6 0.9794 3.3545 -3.7241 18 6 0.6208 3.9644 -4.9082 19 6 -0.6284 4.5449 -5.0404 20 6 -1.5273 4.5132 -3.9893 21 6 -2.8857 5.1475 -4.1424 22 6 -1.1828 3.9022 -2.8011 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 5.8117 0.4042 0.4383 29 1 2.2954 2.1150 -1.9977 30 1 1.9562 2.9054 -3.6209 31 1 1.3179 3.9926 -5.7326 32 1 -0.9030 5.0245 -5.9682 33 1 -2.8367 6.1909 -3.8309 34 1 -3.1962 5.0941 -5.1858 35 1 -3.6069 4.6163 -3.5211 36 1 -1.8857 3.8778 -1.9814 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178002.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:30 Heat of formation + Delta-G solvation = -47.798510 kcal Electronic energy + Delta-G solvation = -17701.564862 eV Core-core repulsion = 14956.093633 eV Total energy + Delta-G solvation = -2745.471230 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.27273 -39.55603 -37.05629 -34.65844 -34.02332 -32.92551 -31.87004 -29.21074 -27.71057 -25.17433 -24.13912 -22.75613 -21.96565 -21.12264 -19.81888 -18.34818 -17.45348 -16.87494 -16.46748 -15.96152 -15.68607 -15.34700 -14.75352 -14.67697 -14.49521 -14.41963 -14.17611 -13.89066 -13.57638 -13.04355 -12.83233 -12.68529 -12.57741 -12.48054 -12.29258 -11.99821 -11.78179 -11.61793 -11.25635 -10.85422 -10.43177 -10.01809 -9.80547 -9.64944 -8.84024 -6.42920 -0.10134 0.38446 1.45403 1.47554 1.69191 1.94326 2.39684 2.42341 2.88800 2.92057 3.77249 3.84243 3.97564 4.18138 4.27624 4.36552 4.39012 4.40807 4.50119 4.69627 4.83774 4.84902 4.89564 5.00066 5.05007 5.17243 5.25272 5.27093 5.37697 5.43139 5.51050 5.57271 5.63146 5.68996 5.97763 6.00754 6.51668 6.79625 7.23598 7.37440 8.53194 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.035199 B = 0.005649 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.276483 B = 4955.139612 C = 5316.828033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.127 4.127 3 C 0.254 3.746 4 H 0.021 0.979 5 C -0.628 4.628 6 H 0.042 0.958 7 C 0.010 3.990 8 N -0.913 5.913 9 Si 1.062 2.938 10 H -0.278 1.278 11 H -0.275 1.275 12 H -0.255 1.255 13 N -0.697 5.697 14 C 0.541 3.459 15 O -0.581 6.581 16 C -0.148 4.148 17 C -0.103 4.103 18 C -0.120 4.120 19 C -0.094 4.094 20 C -0.099 4.099 21 C -0.112 4.112 22 C -0.082 4.082 23 H 0.057 0.943 24 H 0.039 0.961 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.262 0.738 29 H 0.401 0.599 30 H 0.130 0.870 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.203 7.078 -14.103 20.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.166 4.166 3 C 0.149 3.851 4 H 0.039 0.961 5 C -0.666 4.666 6 H 0.060 0.940 7 C -0.193 4.193 8 N -0.546 5.546 9 Si 0.884 3.116 10 H -0.203 1.203 11 H -0.201 1.201 12 H -0.180 1.180 13 N -0.346 5.346 14 C 0.329 3.671 15 O -0.463 6.463 16 C -0.151 4.151 17 C -0.122 4.122 18 C -0.138 4.138 19 C -0.111 4.111 20 C -0.099 4.099 21 C -0.168 4.168 22 C -0.101 4.101 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.237 0.763 30 H 0.148 0.852 31 H 0.176 0.824 32 H 0.179 0.821 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.571 6.740 -11.816 19.215 hybrid contribution 0.865 0.119 -1.627 1.846 sum -12.706 6.859 -13.443 19.728 Atomic orbital electron populations 1.21769 0.95670 1.00370 1.01267 1.22119 0.95173 0.98279 1.01069 1.18773 0.93749 0.89579 0.82996 0.96123 1.22123 0.91212 1.49070 1.04170 0.93967 1.26637 0.96708 0.91144 1.04855 1.70964 1.14938 1.38637 1.30068 0.83791 0.75880 0.78274 0.73669 1.20325 1.20100 1.17995 1.46062 1.15214 1.55915 1.17379 1.18822 0.81851 0.78312 0.88077 1.90683 1.51619 1.61498 1.42520 1.20034 0.97250 1.03779 0.94001 1.21523 0.98783 0.98691 0.93155 1.21455 0.97662 0.97392 0.97254 1.21653 0.92795 0.97456 0.99243 1.20240 0.98455 0.98375 0.92814 1.20851 0.91195 1.00718 1.04032 1.21220 0.94807 0.95900 0.98174 0.92360 0.94136 0.93609 0.92794 0.92801 0.92839 0.76345 0.85250 0.82422 0.82128 0.90130 0.89200 0.91527 0.86139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.47 8.53 71.98 0.61 -4.85 16 2 C -0.13 -5.79 5.37 30.60 0.16 -5.62 16 3 C 0.25 12.46 1.84 44.25 0.08 12.54 16 4 H 0.02 1.12 6.12 -2.39 -0.01 1.10 16 5 C -0.63 -34.70 8.92 25.60 0.23 -34.47 16 6 H 0.04 2.45 7.96 -2.91 -0.02 2.43 16 7 C 0.01 0.56 5.15 84.66 0.44 1.00 16 8 N -0.91 -54.79 13.70 21.45 0.29 -54.50 16 9 Si 1.06 50.94 26.56 68.60 1.82 52.76 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.26 -11.45 6.34 99.48 0.63 -10.82 16 13 N -0.70 -29.52 4.98 -448.98 -2.24 -31.76 16 14 C 0.54 22.10 6.38 86.79 0.55 22.66 16 15 O -0.58 -27.06 13.48 -3.89 -0.05 -27.12 16 16 C -0.15 -4.79 5.87 -20.09 -0.12 -4.91 16 17 C -0.10 -2.69 9.54 22.53 0.21 -2.47 16 18 C -0.12 -2.31 10.03 22.23 0.22 -2.09 16 19 C -0.09 -1.62 9.69 22.33 0.22 -1.40 16 20 C -0.10 -2.07 5.87 -19.90 -0.12 -2.19 16 21 C -0.11 -1.58 10.01 71.24 0.71 -0.87 16 22 C -0.08 -2.35 9.24 22.53 0.21 -2.15 16 23 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 24 H 0.04 1.73 7.89 -2.39 -0.02 1.71 16 25 H 0.04 1.89 5.63 -2.39 -0.01 1.88 16 26 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.05 2.53 5.77 -2.39 -0.01 2.52 16 28 H 0.26 15.70 8.73 -92.70 -0.81 14.89 16 29 H 0.40 15.20 6.56 -92.70 -0.61 14.59 16 30 H 0.13 3.20 6.41 -2.91 -0.02 3.18 16 31 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 32 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 33 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.09 0.87 8.08 -2.39 -0.02 0.85 16 35 H 0.07 0.98 8.08 -2.39 -0.02 0.96 16 36 H 0.12 3.67 7.65 -2.91 -0.02 3.65 16 Total: -1.00 -67.72 295.14 3.60 -64.11 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.36 Total: 21.32 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: 3.42 Total: -24.82 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -1.94 Total: -86.26 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.05 Total: -27.12 kcal Atomic # 14 Polarization: 50.94 SS G_CDS: 1.82 Total: 52.76 kcal Total: -67.72 3.60 -64.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178002.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.314 kcal (2) G-P(sol) polarization free energy of solvation -67.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds