Wall clock time and date at job start Sun Mar 29 2020 22:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38230 * 119.99896 * 269.72872 * 3 2 1 5 5 C 1.38238 * 119.99734 * 179.76790 * 4 3 2 6 6 C 1.38241 * 119.99644 * 0.48053 * 5 4 3 7 7 C 1.50699 * 119.99538 * 179.77244 * 6 5 4 8 8 C 1.53002 * 109.47058 * 270.02151 * 7 6 5 9 9 N 1.46500 * 109.46977 * 180.02562 * 8 7 6 10 10 C 1.34779 * 119.99966 * 179.97438 * 9 8 7 11 11 O 1.21693 * 119.99567 * 0.02562 * 10 9 8 12 12 C 1.46370 * 120.00441 * 180.02562 * 10 9 8 13 13 H 1.08012 * 119.99758 * 0.02562 * 12 10 9 14 14 C 1.40047 * 120.00256 * 180.02562 * 12 10 9 15 15 N 1.30670 * 120.00300 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99964 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46901 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47174 * 120.00097 * 16 14 12 19 19 H 1.48493 * 109.47193 * 240.00303 * 16 14 12 20 20 C 1.38231 * 120.00246 * 359.79479 * 6 5 4 21 21 C 1.38233 * 119.99821 * 359.95399 * 20 6 5 22 22 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 27 27 H 1.07999 * 120.00202 * 359.97438 * 4 3 2 28 28 H 1.07995 * 120.00141 * 180.25854 * 5 4 3 29 29 H 1.09004 * 109.47431 * 30.02160 * 7 6 5 30 30 H 1.09002 * 109.46963 * 150.02319 * 7 6 5 31 31 H 1.09000 * 109.47357 * 299.99952 * 8 7 6 32 32 H 1.09002 * 109.47097 * 60.00250 * 8 7 6 33 33 H 0.96998 * 120.00438 * 0.02562 * 9 8 7 34 34 H 0.96992 * 120.00364 * 179.97438 * 15 14 12 35 35 H 1.07996 * 120.00113 * 179.97438 * 20 6 5 36 36 H 1.08003 * 119.99863 * 179.97438 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7243 3.3755 -1.1971 6 6 2.9542 4.0273 0.0002 7 6 3.4564 5.4481 0.0001 8 6 4.9865 5.4482 0.0001 9 7 5.4747 6.8295 0.0007 10 6 6.7998 7.0758 0.0013 11 8 7.5906 6.1509 0.0009 12 6 7.2877 8.4558 0.0025 13 1 6.5858 9.2768 0.0033 14 6 8.6646 8.7118 0.0026 15 7 9.5138 7.7187 0.0011 16 14 9.2871 10.4730 0.0048 17 1 8.1320 11.4063 0.0068 18 1 10.1124 10.7048 1.2174 19 1 10.1118 10.7080 -1.2075 20 6 2.7239 3.3756 1.1972 21 6 2.2627 2.0725 1.1972 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 2.0926 1.5599 -2.1324 28 1 2.9045 3.8846 -2.1323 29 1 3.0931 5.9620 -0.8899 30 1 3.0931 5.9619 0.8902 31 1 5.3499 4.9344 0.8901 32 1 5.3498 4.9344 -0.8899 33 1 4.8444 7.5667 0.0014 34 1 10.4674 7.8959 0.0008 35 1 2.9039 3.8846 2.1325 36 1 2.0832 1.5632 2.1325 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057497779.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:14 Heat of formation + Delta-G solvation = -41.274998 kcal Electronic energy + Delta-G solvation = -16677.763982 eV Core-core repulsion = 13932.575633 eV Total energy + Delta-G solvation = -2745.188349 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.52742 -37.29670 -35.19047 -33.37455 -32.32696 -30.86438 -30.77953 -27.80758 -26.02565 -23.81062 -22.67586 -21.99364 -20.35737 -19.63450 -17.18046 -16.06497 -15.73926 -15.33815 -15.08420 -14.43134 -14.23174 -13.95988 -13.68222 -13.65392 -13.23881 -13.00495 -12.49335 -12.07395 -12.00932 -11.85850 -11.38968 -11.16332 -11.08752 -11.08477 -10.87244 -10.78106 -10.51023 -10.42181 -10.17030 -8.85603 -8.83173 -8.43082 -7.57613 -7.46206 -6.15814 -4.61244 1.38818 1.47425 3.14600 3.22500 3.27132 3.78678 4.13024 4.62228 4.63204 4.74539 4.80301 5.01931 5.05775 5.18293 5.32702 5.38193 5.39453 5.54578 5.62570 5.64824 5.70293 5.82076 5.86055 5.89891 5.97763 6.13311 6.18035 6.48625 6.51332 6.63477 6.64950 6.81355 7.08057 7.46012 7.96778 8.13572 8.36175 9.05219 9.57749 10.63382 10.82235 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.067470 B = 0.003384 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.900886 B = 8272.032240 C = 8366.538317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.094 4.094 4 C -0.117 4.117 5 C -0.112 4.112 6 C -0.073 4.073 7 C -0.092 4.092 8 C 0.140 3.860 9 N -0.770 5.770 10 C 0.553 3.447 11 O -0.581 6.581 12 C -0.545 4.545 13 H 0.068 0.932 14 C 0.086 3.914 15 N -0.769 5.769 16 Si 0.908 3.092 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.112 4.112 21 C -0.117 4.117 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.380 0.620 34 H 0.267 0.733 35 H 0.122 0.878 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.869 -9.879 -0.003 19.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.135 4.135 5 C -0.130 4.130 6 C -0.074 4.074 7 C -0.130 4.130 8 C 0.015 3.985 9 N -0.425 5.425 10 C 0.357 3.643 11 O -0.464 6.464 12 C -0.583 4.583 13 H 0.086 0.914 14 C -0.133 4.133 15 N -0.398 5.398 16 Si 0.733 3.267 17 H -0.188 1.188 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.130 4.130 21 C -0.135 4.135 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.136 0.864 28 H 0.140 0.860 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.211 0.789 34 H 0.078 0.922 35 H 0.140 0.860 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.079 -10.646 -0.003 19.283 hybrid contribution 0.051 1.208 0.002 1.209 sum -16.028 -9.437 -0.001 18.600 Atomic orbital electron populations 1.21746 0.94935 1.01445 1.02186 1.20518 0.95995 0.92917 1.02685 1.19838 1.00071 0.96128 0.93316 1.20970 1.00336 0.94882 0.97352 1.21077 0.99346 0.94804 0.97795 1.19842 0.98169 0.96221 0.93157 1.20848 0.96629 0.92498 1.02994 1.20806 0.90085 0.86741 1.00850 1.46156 1.08581 1.04930 1.82867 1.18240 0.79121 0.90583 0.76334 1.90601 1.54420 1.46620 1.54769 1.20927 0.91977 0.91022 1.54337 0.91392 1.25721 0.96795 0.98133 0.92652 1.70034 1.02420 1.31757 1.35551 0.86319 0.79219 0.83028 0.78184 1.18791 1.20186 1.20182 1.21072 0.99321 0.94830 0.97797 1.20969 1.00324 0.94899 0.97351 0.92605 0.92605 0.92611 0.91197 0.91198 0.86385 0.86005 0.90777 0.90781 0.93381 0.93373 0.78907 0.92191 0.86005 0.86386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.89 37.16 0.37 -0.74 16 2 C -0.08 -0.73 6.07 -27.88 -0.17 -0.90 16 3 C -0.09 -1.06 5.13 -104.62 -0.54 -1.60 16 4 C -0.12 -1.39 9.70 -39.58 -0.38 -1.77 16 5 C -0.11 -1.47 9.70 -39.58 -0.38 -1.85 16 6 C -0.07 -1.02 5.13 -104.62 -0.54 -1.56 16 7 C -0.09 -1.35 5.46 -27.88 -0.15 -1.50 16 8 C 0.14 2.79 5.66 -4.04 -0.02 2.77 16 9 N -0.77 -17.63 5.55 -61.72 -0.34 -17.97 16 10 C 0.55 16.18 7.75 -12.99 -0.10 16.08 16 11 O -0.58 -19.43 15.02 5.19 0.08 -19.35 16 12 C -0.55 -15.68 9.54 -35.63 -0.34 -16.02 16 13 H 0.07 1.78 7.85 -52.48 -0.41 1.37 16 14 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 15 N -0.77 -23.50 11.83 55.55 0.66 -22.84 16 16 Si 0.91 20.36 29.56 -169.99 -5.02 15.34 16 17 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 C -0.11 -1.47 9.70 -39.59 -0.38 -1.85 16 21 C -0.12 -1.39 9.70 -39.58 -0.38 -1.77 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 26 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 27 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 28 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 30 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.38 7.51 8.45 -40.82 -0.35 7.16 16 34 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 35 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 312.09 15.07 4.70 4.70 Total: -1.00 -34.96 312.09 -8.43 -43.39 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -5.38 Total: 5.09 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -3.12 Total: -8.35 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.31 Total: -40.81 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: 0.08 Total: -19.35 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.96 -8.43 -43.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057497779.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.110 kcal (2) G-P(sol) polarization free energy of solvation -34.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds