Wall clock time and date at job start Sun Mar 29 2020 22:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38230 * 119.99896 * 269.72872 * 3 2 1 5 5 C 1.38238 * 119.99734 * 179.76790 * 4 3 2 6 6 C 1.38241 * 119.99644 * 0.48053 * 5 4 3 7 7 C 1.50699 * 119.99538 * 179.77244 * 6 5 4 8 8 C 1.53002 * 109.47058 * 270.02151 * 7 6 5 9 9 N 1.46500 * 109.46977 * 180.02562 * 8 7 6 10 10 C 1.34779 * 119.99966 * 179.97438 * 9 8 7 11 11 O 1.21693 * 119.99567 * 0.02562 * 10 9 8 12 12 C 1.46370 * 120.00441 * 180.02562 * 10 9 8 13 13 H 1.08012 * 119.99758 * 0.02562 * 12 10 9 14 14 C 1.40047 * 120.00256 * 180.02562 * 12 10 9 15 15 N 1.30670 * 120.00300 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99964 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46901 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47174 * 120.00097 * 16 14 12 19 19 H 1.48493 * 109.47193 * 240.00303 * 16 14 12 20 20 C 1.38231 * 120.00246 * 359.79479 * 6 5 4 21 21 C 1.38233 * 119.99821 * 359.95399 * 20 6 5 22 22 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 27 27 H 1.07999 * 120.00202 * 359.97438 * 4 3 2 28 28 H 1.07995 * 120.00141 * 180.25854 * 5 4 3 29 29 H 1.09004 * 109.47431 * 30.02160 * 7 6 5 30 30 H 1.09002 * 109.46963 * 150.02319 * 7 6 5 31 31 H 1.09000 * 109.47357 * 299.99952 * 8 7 6 32 32 H 1.09002 * 109.47097 * 60.00250 * 8 7 6 33 33 H 0.96998 * 120.00438 * 0.02562 * 9 8 7 34 34 H 0.96992 * 120.00364 * 179.97438 * 15 14 12 35 35 H 1.07996 * 120.00113 * 179.97438 * 20 6 5 36 36 H 1.08003 * 119.99863 * 179.97438 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2681 2.0706 -1.1971 5 6 2.7243 3.3755 -1.1971 6 6 2.9542 4.0273 0.0002 7 6 3.4564 5.4481 0.0001 8 6 4.9865 5.4482 0.0001 9 7 5.4747 6.8295 0.0007 10 6 6.7998 7.0758 0.0013 11 8 7.5906 6.1509 0.0009 12 6 7.2877 8.4558 0.0025 13 1 6.5858 9.2768 0.0033 14 6 8.6646 8.7118 0.0026 15 7 9.5138 7.7187 0.0011 16 14 9.2871 10.4730 0.0048 17 1 8.1320 11.4063 0.0068 18 1 10.1124 10.7048 1.2174 19 1 10.1118 10.7080 -1.2075 20 6 2.7239 3.3756 1.1972 21 6 2.2627 2.0725 1.1972 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 2.0926 1.5599 -2.1324 28 1 2.9045 3.8846 -2.1323 29 1 3.0931 5.9620 -0.8899 30 1 3.0931 5.9619 0.8902 31 1 5.3499 4.9344 0.8901 32 1 5.3498 4.9344 -0.8899 33 1 4.8444 7.5667 0.0014 34 1 10.4674 7.8959 0.0008 35 1 2.9039 3.8846 2.1325 36 1 2.0832 1.5632 2.1325 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057497779.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:13 Heat of formation + Delta-G solvation = -63.797803 kcal Electronic energy + Delta-G solvation = -16678.740644 eV Core-core repulsion = 13932.575633 eV Total energy + Delta-G solvation = -2746.165011 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.51108 -39.36424 -36.48779 -34.92672 -34.40055 -32.10886 -31.80824 -29.28900 -27.82237 -24.98045 -23.62525 -23.16442 -21.74527 -21.32598 -19.21437 -17.52203 -16.96500 -16.76508 -16.39570 -15.98256 -15.70536 -15.63115 -14.62946 -14.56665 -14.37565 -14.26326 -13.92117 -13.85217 -13.25129 -13.06943 -12.81985 -12.72657 -12.56240 -12.38218 -12.32721 -11.96991 -11.92988 -11.66750 -11.62373 -10.95433 -9.90579 -9.81371 -9.51016 -9.40100 -8.29910 -6.86840 0.40903 0.51515 1.40657 1.40965 1.59391 2.24917 2.46172 2.79197 3.15073 3.60527 3.87444 3.88371 4.09792 4.14379 4.16538 4.23906 4.39041 4.52480 4.60128 4.61251 4.68565 4.74151 4.98881 5.06661 5.07474 5.10099 5.20595 5.25171 5.31702 5.40090 5.53397 5.73515 5.75093 5.86819 6.13724 6.22990 6.25850 6.85781 7.54974 8.48205 8.66760 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.067470 B = 0.003384 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.900886 B = 8272.032240 C = 8366.538317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.125 4.125 5 C -0.124 4.124 6 C -0.096 4.096 7 C -0.073 4.073 8 C 0.145 3.855 9 N -0.756 5.756 10 C 0.534 3.466 11 O -0.636 6.636 12 C -0.572 4.572 13 H 0.090 0.910 14 C 0.025 3.975 15 N -0.824 5.824 16 Si 1.002 2.998 17 H -0.245 1.245 18 H -0.269 1.269 19 H -0.268 1.268 20 C -0.124 4.124 21 C -0.125 4.125 22 H 0.052 0.948 23 H 0.071 0.929 24 H 0.052 0.948 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.138 0.862 28 H 0.127 0.873 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.397 0.603 34 H 0.275 0.725 35 H 0.127 0.873 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.331 -9.099 -0.001 20.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.143 4.143 5 C -0.142 4.142 6 C -0.097 4.097 7 C -0.111 4.111 8 C 0.020 3.980 9 N -0.411 5.411 10 C 0.338 3.662 11 O -0.524 6.524 12 C -0.609 4.609 13 H 0.108 0.892 14 C -0.190 4.190 15 N -0.454 5.454 16 Si 0.821 3.179 17 H -0.168 1.168 18 H -0.193 1.193 19 H -0.193 1.193 20 C -0.142 4.142 21 C -0.143 4.143 22 H 0.071 0.929 23 H 0.090 0.910 24 H 0.071 0.929 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.156 0.844 28 H 0.145 0.855 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.232 0.768 34 H 0.084 0.916 35 H 0.145 0.855 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.619 -9.860 -0.001 20.190 hybrid contribution 0.445 0.847 0.001 0.957 sum -17.174 -9.012 0.000 19.395 Atomic orbital electron populations 1.21724 0.93938 1.02434 1.01928 1.20586 0.96759 0.91196 1.03538 1.20222 0.98815 0.97366 0.92937 1.21261 0.99912 0.94529 0.98585 1.21270 0.99574 0.95602 0.97781 1.19834 0.99885 0.95962 0.94001 1.20656 0.92164 0.93857 1.04376 1.20840 0.93846 0.84519 0.98748 1.45825 1.07171 1.06918 1.81145 1.18704 0.80687 0.90696 0.76093 1.90552 1.56449 1.48034 1.57315 1.21480 0.93319 0.91453 1.54602 0.89160 1.27053 0.96709 1.04037 0.91171 1.70205 1.03233 1.35378 1.36549 0.84914 0.78905 0.75556 0.78519 1.16796 1.19347 1.19334 1.21266 0.99552 0.95628 0.97782 1.21260 0.99896 0.94542 0.98584 0.92870 0.91022 0.92880 0.90376 0.90377 0.84422 0.85501 0.89356 0.89361 0.95528 0.95517 0.76847 0.91552 0.85502 0.84420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.89 71.98 0.71 -1.13 16 2 C -0.08 -1.27 6.07 29.85 0.18 -1.09 16 3 C -0.09 -1.97 5.13 -19.86 -0.10 -2.07 16 4 C -0.13 -2.80 9.70 22.27 0.22 -2.58 16 5 C -0.12 -3.19 9.70 22.27 0.22 -2.97 16 6 C -0.10 -2.66 5.13 -19.87 -0.10 -2.76 16 7 C -0.07 -2.10 5.46 29.85 0.16 -1.94 16 8 C 0.15 5.94 5.66 86.38 0.49 6.43 16 9 N -0.76 -35.08 5.55 -467.40 -2.59 -37.68 16 10 C 0.53 32.06 7.75 86.36 0.67 32.72 16 11 O -0.64 -44.39 15.02 -4.33 -0.07 -44.45 16 12 C -0.57 -33.00 9.54 24.83 0.24 -32.77 16 13 H 0.09 4.63 7.85 -2.90 -0.02 4.60 16 14 C 0.02 1.42 5.50 85.30 0.47 1.89 16 15 N -0.82 -51.58 11.83 21.84 0.26 -51.32 16 16 Si 1.00 41.34 29.56 68.60 2.03 43.37 16 17 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 18 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 19 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 20 C -0.12 -3.19 9.70 22.27 0.22 -2.97 16 21 C -0.12 -2.80 9.70 22.27 0.22 -2.58 16 22 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 25 H 0.08 1.07 8.09 -2.39 -0.02 1.05 16 26 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 27 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 28 H 0.13 3.01 8.06 -2.91 -0.02 2.98 16 29 H 0.09 2.28 8.09 -2.38 -0.02 2.26 16 30 H 0.09 2.28 8.09 -2.39 -0.02 2.26 16 31 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.40 15.47 8.45 -92.71 -0.78 14.68 16 34 H 0.27 15.47 8.29 -92.71 -0.77 14.70 16 35 H 0.13 3.01 8.06 -2.91 -0.02 2.98 16 36 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -78.00 312.09 3.48 -74.51 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.28 Total: 27.38 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 3.58 Total: -11.82 kcal Atomic # 7 Polarization: -86.66 SS G_CDS: -2.34 Total: -88.99 kcal Atomic # 8 Polarization: -44.39 SS G_CDS: -0.07 Total: -44.45 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -78.00 3.48 -74.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057497779.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.716 kcal (2) G-P(sol) polarization free energy of solvation -77.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds