Wall clock time and date at job start Sun Mar 29 2020 22:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47229 * 2 1 4 4 H 1.09007 * 109.46839 * 304.99744 * 3 2 1 5 5 C 1.53001 * 109.47312 * 185.00180 * 3 2 1 6 6 N 1.46494 * 109.47343 * 64.99883 * 3 2 1 7 7 C 1.34776 * 120.00009 * 204.99929 * 6 3 2 8 8 O 1.21609 * 120.00181 * 0.02562 * 7 6 3 9 9 C 1.47435 * 119.99851 * 180.02562 * 7 6 3 10 10 C 1.39235 * 120.28458 * 356.67675 * 9 7 6 11 11 C 1.38211 * 120.09301 * 180.27836 * 10 9 7 12 12 C 1.38829 * 120.67901 * 359.70331 * 11 10 9 13 13 C 1.37601 * 120.56863 * 359.97438 * 12 11 10 14 14 C 1.40712 * 119.88037 * 0.02742 * 13 12 11 15 15 C 1.40885 * 120.32562 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99856 * 145.79790 * 15 14 13 17 17 C 1.40272 * 120.00496 * 325.79403 * 15 14 13 18 18 N 1.30635 * 119.99551 * 340.74470 * 17 15 14 19 19 Si 1.86798 * 120.00264 * 160.74014 * 17 15 14 20 20 H 1.48499 * 109.47225 * 180.02562 * 19 17 15 21 21 H 1.48495 * 109.47108 * 300.00180 * 19 17 15 22 22 H 1.48501 * 109.46970 * 60.00492 * 19 17 15 23 23 H 1.09006 * 109.47214 * 300.00280 * 1 2 3 24 24 H 1.09002 * 109.47400 * 59.99814 * 1 2 3 25 25 H 1.09001 * 109.47479 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47214 * 239.99719 * 2 1 3 27 27 H 1.09002 * 109.47400 * 120.00186 * 2 1 3 28 28 H 1.09003 * 109.47003 * 300.00038 * 5 3 2 29 29 H 1.08998 * 109.47084 * 59.99891 * 5 3 2 30 30 H 1.08999 * 109.47061 * 179.97438 * 5 3 2 31 31 H 0.96994 * 119.99831 * 25.00001 * 6 3 2 32 32 H 1.08001 * 119.94814 * 0.02562 * 10 9 7 33 33 H 1.08002 * 119.66230 * 179.71940 * 11 10 9 34 34 H 1.08002 * 119.72114 * 180.02562 * 12 11 10 35 35 H 1.08002 * 120.06038 * 180.02562 * 13 12 11 36 36 H 0.96991 * 119.99936 * 354.83202 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1258 6 7 1.6524 2.0975 1.2517 7 6 1.5257 3.4384 1.2995 8 8 1.7325 4.1046 0.3033 9 6 1.1362 4.0977 2.5594 10 6 0.8308 3.3368 3.6848 11 6 0.4606 3.9587 4.8622 12 6 0.3941 5.3431 4.9415 13 6 0.6964 6.1220 3.8482 14 6 1.0760 5.5137 2.6375 15 6 1.3870 6.3021 1.5121 16 1 2.1518 5.9792 0.8212 17 6 0.7034 7.5065 1.2888 18 7 -0.4448 7.7236 1.8727 19 14 1.4350 8.7997 0.1566 20 1 0.5247 9.9710 0.0896 21 1 2.7553 9.2290 0.6834 22 1 1.6067 8.2273 -1.2029 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.9994 0.9053 0.7160 29 1 3.8531 0.9570 -1.0571 30 1 3.9281 2.4720 -0.1262 31 1 1.4871 1.5661 2.0462 32 1 0.8794 2.2590 3.6363 33 1 0.2209 3.3616 5.7296 34 1 0.1034 5.8130 5.8695 35 1 0.6423 7.1984 3.9191 36 1 -0.8606 7.0240 2.4002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058241912.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:03 Heat of formation + Delta-G solvation = -40.627871 kcal Electronic energy + Delta-G solvation = -17969.858007 eV Core-core repulsion = 15224.697720 eV Total energy + Delta-G solvation = -2745.160287 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.17496 -37.30129 -35.62702 -33.95158 -31.85468 -30.18797 -29.48409 -28.87219 -25.24961 -23.75427 -22.50238 -21.11115 -20.35427 -19.50075 -18.01544 -16.41276 -15.74853 -14.73782 -14.34658 -14.20168 -14.03478 -13.75281 -13.50053 -13.29335 -13.12022 -12.62117 -12.31966 -12.05387 -11.71767 -11.57464 -11.15490 -11.10900 -10.98886 -10.84743 -10.72681 -10.52158 -10.35517 -10.13183 -9.59284 -9.06007 -8.44852 -8.35394 -7.77331 -7.59013 -7.12981 -4.44360 2.26471 2.75025 3.21303 3.32049 3.41880 3.97567 4.05528 4.10410 4.65858 4.86941 5.15456 5.19624 5.48454 5.59322 5.69280 5.77644 5.86637 5.88339 5.97549 6.02281 6.03696 6.15324 6.29613 6.33947 6.48876 6.57938 6.73135 7.00793 7.21691 7.30192 7.50927 7.62979 7.73737 7.90765 8.11386 8.23245 8.43014 8.75374 8.87957 9.41575 10.05901 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.019763 B = 0.007880 C = 0.006209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.481020 B = 3552.616015 C = 4508.774894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C 0.143 3.857 4 H 0.083 0.917 5 C -0.161 4.161 6 N -0.742 5.742 7 C 0.564 3.436 8 O -0.538 6.538 9 C -0.265 4.265 10 C -0.044 4.044 11 C -0.260 4.260 12 C -0.076 4.076 13 C -0.201 4.201 14 C 0.121 3.879 15 C -0.467 4.467 16 H 0.105 0.895 17 C 0.031 3.969 18 N -0.794 5.794 19 Si 1.070 2.930 20 H -0.275 1.275 21 H -0.274 1.274 22 H -0.273 1.273 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.389 0.611 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.683 -10.005 -1.152 10.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C 0.038 3.962 4 H 0.101 0.899 5 C -0.220 4.220 6 N -0.397 5.397 7 C 0.358 3.642 8 O -0.417 6.417 9 C -0.270 4.270 10 C -0.063 4.063 11 C -0.280 4.280 12 C -0.095 4.095 13 C -0.221 4.221 14 C 0.116 3.884 15 C -0.494 4.494 16 H 0.123 0.877 17 C -0.190 4.190 18 N -0.418 5.418 19 Si 0.893 3.107 20 H -0.199 1.199 21 H -0.200 1.200 22 H -0.198 1.198 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.224 0.776 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.124 0.876 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.535 -7.969 -2.478 8.721 hybrid contribution 0.056 -1.997 1.233 2.348 sum 2.591 -9.966 -1.245 10.372 Atomic orbital electron populations 1.21761 0.95499 1.01056 1.02628 1.21809 0.96474 0.96113 1.02265 1.20787 0.94259 0.92311 0.88838 0.89920 1.22177 0.96283 1.02609 1.00918 1.46083 1.73726 1.07595 1.12275 1.18359 0.76293 0.80583 0.88959 1.90668 1.50790 1.63288 1.36905 1.19435 1.20592 0.93994 0.92975 1.20716 0.95935 0.96615 0.92997 1.20237 1.15774 0.94306 0.97656 1.20740 0.97891 0.93865 0.96987 1.21253 1.09172 0.98609 0.93021 1.17509 0.88017 0.90134 0.92730 1.21168 1.17851 1.02885 1.07451 0.87718 1.27260 0.94475 0.99232 0.98071 1.70387 1.12931 1.37446 1.21007 0.83565 0.76291 0.74870 0.75956 1.19943 1.19970 1.19799 0.92286 0.92659 0.93039 0.91046 0.91847 0.92996 0.92483 0.91908 0.77648 0.89160 0.88949 0.88916 0.87569 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.80 37.15 0.36 -1.43 16 2 C -0.13 -1.48 5.47 -26.74 -0.15 -1.62 16 3 C 0.14 2.18 2.57 -67.93 -0.17 2.01 16 4 H 0.08 1.45 7.58 -51.93 -0.39 1.05 16 5 C -0.16 -2.28 9.48 37.16 0.35 -1.93 16 6 N -0.74 -13.16 4.48 -54.88 -0.25 -13.41 16 7 C 0.56 13.11 7.69 -12.52 -0.10 13.01 16 8 O -0.54 -14.27 13.22 5.27 0.07 -14.20 16 9 C -0.27 -6.49 5.92 -104.36 -0.62 -7.11 16 10 C -0.04 -0.93 9.53 -39.22 -0.37 -1.30 16 11 C -0.26 -5.49 10.03 -39.37 -0.39 -5.89 16 12 C -0.08 -1.69 10.01 -39.60 -0.40 -2.09 16 13 C -0.20 -5.06 7.87 -38.88 -0.31 -5.37 16 14 C 0.12 3.24 5.17 -106.54 -0.55 2.69 16 15 C -0.47 -12.95 7.65 -37.82 -0.29 -13.24 16 16 H 0.11 3.03 5.93 -52.48 -0.31 2.72 16 17 C 0.03 0.82 5.04 -17.30 -0.09 0.73 16 18 N -0.79 -21.48 12.57 55.56 0.70 -20.78 16 19 Si 1.07 22.77 29.98 -169.99 -5.10 17.67 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 H 0.06 0.77 7.75 -51.93 -0.40 0.37 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.39 6.04 6.64 -40.82 -0.27 5.77 16 32 H 0.09 1.58 6.41 -52.49 -0.34 1.25 16 33 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 34 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 35 H 0.11 2.72 6.94 -52.49 -0.36 2.36 16 36 H 0.30 8.24 6.55 -40.82 -0.27 7.98 16 LS Contribution 298.74 15.07 4.50 4.50 Total: -1.00 -29.63 298.74 -7.74 -37.37 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -4.95 Total: 10.39 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -2.72 Total: -21.54 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.45 Total: -34.19 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.07 Total: -14.20 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.10 Total: 17.67 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.63 -7.74 -37.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241912.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.257 kcal (2) G-P(sol) polarization free energy of solvation -29.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds