Wall clock time and date at job start Sun Mar 29 2020 22:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47229 * 2 1 4 4 H 1.09007 * 109.46839 * 304.99744 * 3 2 1 5 5 C 1.53001 * 109.47312 * 185.00180 * 3 2 1 6 6 N 1.46494 * 109.47343 * 64.99883 * 3 2 1 7 7 C 1.34776 * 120.00009 * 204.99929 * 6 3 2 8 8 O 1.21609 * 120.00181 * 0.02562 * 7 6 3 9 9 C 1.47435 * 119.99851 * 180.02562 * 7 6 3 10 10 C 1.39235 * 120.28458 * 356.67675 * 9 7 6 11 11 C 1.38211 * 120.09301 * 180.27836 * 10 9 7 12 12 C 1.38829 * 120.67901 * 359.70331 * 11 10 9 13 13 C 1.37601 * 120.56863 * 359.97438 * 12 11 10 14 14 C 1.40712 * 119.88037 * 0.02742 * 13 12 11 15 15 C 1.40885 * 120.32562 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99856 * 145.79790 * 15 14 13 17 17 C 1.40272 * 120.00496 * 325.79403 * 15 14 13 18 18 N 1.30635 * 119.99551 * 340.74470 * 17 15 14 19 19 Si 1.86798 * 120.00264 * 160.74014 * 17 15 14 20 20 H 1.48499 * 109.47225 * 180.02562 * 19 17 15 21 21 H 1.48495 * 109.47108 * 300.00180 * 19 17 15 22 22 H 1.48501 * 109.46970 * 60.00492 * 19 17 15 23 23 H 1.09006 * 109.47214 * 300.00280 * 1 2 3 24 24 H 1.09002 * 109.47400 * 59.99814 * 1 2 3 25 25 H 1.09001 * 109.47479 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47214 * 239.99719 * 2 1 3 27 27 H 1.09002 * 109.47400 * 120.00186 * 2 1 3 28 28 H 1.09003 * 109.47003 * 300.00038 * 5 3 2 29 29 H 1.08998 * 109.47084 * 59.99891 * 5 3 2 30 30 H 1.08999 * 109.47061 * 179.97438 * 5 3 2 31 31 H 0.96994 * 119.99831 * 25.00001 * 6 3 2 32 32 H 1.08001 * 119.94814 * 0.02562 * 10 9 7 33 33 H 1.08002 * 119.66230 * 179.71940 * 11 10 9 34 34 H 1.08002 * 119.72114 * 180.02562 * 12 11 10 35 35 H 1.08002 * 120.06038 * 180.02562 * 13 12 11 36 36 H 0.96991 * 119.99936 * 354.83202 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1258 6 7 1.6524 2.0975 1.2517 7 6 1.5257 3.4384 1.2995 8 8 1.7325 4.1046 0.3033 9 6 1.1362 4.0977 2.5594 10 6 0.8308 3.3368 3.6848 11 6 0.4606 3.9587 4.8622 12 6 0.3941 5.3431 4.9415 13 6 0.6964 6.1220 3.8482 14 6 1.0760 5.5137 2.6375 15 6 1.3870 6.3021 1.5121 16 1 2.1518 5.9792 0.8212 17 6 0.7034 7.5065 1.2888 18 7 -0.4448 7.7236 1.8727 19 14 1.4350 8.7997 0.1566 20 1 0.5247 9.9710 0.0896 21 1 2.7553 9.2290 0.6834 22 1 1.6067 8.2273 -1.2029 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.9994 0.9053 0.7160 29 1 3.8531 0.9570 -1.0571 30 1 3.9281 2.4720 -0.1262 31 1 1.4871 1.5661 2.0462 32 1 0.8794 2.2590 3.6363 33 1 0.2209 3.3616 5.7296 34 1 0.1034 5.8130 5.8695 35 1 0.6423 7.1984 3.9191 36 1 -0.8606 7.0240 2.4002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058241912.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:02 Heat of formation + Delta-G solvation = -58.286026 kcal Electronic energy + Delta-G solvation = -17970.623722 eV Core-core repulsion = 15224.697720 eV Total energy + Delta-G solvation = -2745.926002 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.90464 -39.01563 -37.15710 -35.82770 -33.36007 -31.74845 -31.21719 -30.34238 -27.15143 -25.03544 -24.05133 -22.87250 -21.74530 -21.20444 -19.88994 -18.11996 -17.20388 -16.52398 -16.02172 -15.89082 -15.66245 -15.36421 -14.86840 -14.59299 -14.41125 -14.32864 -13.99336 -13.77174 -13.12545 -12.94875 -12.72504 -12.63800 -12.49796 -12.23024 -12.03308 -11.95702 -11.93797 -11.61348 -11.43890 -10.96725 -10.31259 -9.95246 -9.60222 -9.49418 -9.10620 -6.46337 0.41071 0.90273 1.44974 1.60686 1.75329 2.27857 2.30384 2.48486 2.74500 3.56513 3.78922 4.11835 4.18294 4.24552 4.28250 4.43926 4.50381 4.64471 4.74977 4.76755 4.86882 4.88685 5.01245 5.07577 5.13644 5.22930 5.28161 5.40769 5.43197 5.64015 5.69638 5.75051 5.90809 5.97634 6.20633 6.33673 6.71304 6.86525 6.95523 7.66500 8.04000 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.019763 B = 0.007880 C = 0.006209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.481020 B = 3552.616015 C = 4508.774894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C 0.136 3.864 4 H 0.052 0.948 5 C -0.156 4.156 6 N -0.721 5.721 7 C 0.558 3.442 8 O -0.581 6.581 9 C -0.284 4.284 10 C -0.042 4.042 11 C -0.244 4.244 12 C -0.073 4.073 13 C -0.226 4.226 14 C 0.095 3.905 15 C -0.512 4.512 16 H 0.080 0.920 17 C -0.003 4.003 18 N -0.818 5.818 19 Si 1.115 2.885 20 H -0.263 1.263 21 H -0.259 1.259 22 H -0.272 1.272 23 H 0.043 0.957 24 H 0.040 0.960 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.024 0.976 31 H 0.404 0.596 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.125 0.875 35 H 0.088 0.912 36 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.938 -13.002 0.172 13.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C 0.032 3.968 4 H 0.070 0.930 5 C -0.214 4.214 6 N -0.375 5.375 7 C 0.351 3.649 8 O -0.463 6.463 9 C -0.288 4.288 10 C -0.061 4.061 11 C -0.263 4.263 12 C -0.091 4.091 13 C -0.246 4.246 14 C 0.091 3.909 15 C -0.540 4.540 16 H 0.097 0.903 17 C -0.218 4.218 18 N -0.442 5.442 19 Si 0.932 3.068 20 H -0.187 1.187 21 H -0.183 1.183 22 H -0.197 1.197 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.095 0.905 26 H 0.114 0.886 27 H 0.104 0.896 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.043 0.957 31 H 0.241 0.759 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.142 0.858 35 H 0.107 0.893 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.793 -11.027 -1.121 11.430 hybrid contribution -0.025 -1.359 0.968 1.669 sum 2.768 -12.386 -0.153 12.693 Atomic orbital electron populations 1.21779 0.95834 1.02278 1.01194 1.21769 0.96031 0.93095 1.04547 1.21040 0.95110 0.94244 0.86414 0.92983 1.22121 0.95185 1.00806 1.03279 1.45870 1.71889 1.05767 1.13928 1.18413 0.76117 0.82276 0.88123 1.90649 1.52681 1.64791 1.38140 1.19874 1.20284 0.93807 0.94876 1.21155 0.94331 0.98783 0.91793 1.20818 1.12616 0.94040 0.98829 1.21161 0.96110 0.94730 0.97111 1.21209 1.11320 0.98247 0.93795 1.17916 0.88266 0.91637 0.93108 1.21087 1.19464 1.04982 1.08463 0.90254 1.28460 0.94015 1.00718 0.98621 1.70498 1.13682 1.36940 1.23121 0.83039 0.76467 0.73038 0.74249 1.18731 1.18346 1.19745 0.93803 0.94103 0.90458 0.88604 0.89606 0.91099 0.89715 0.95712 0.75937 0.84702 0.84508 0.85757 0.89338 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.80 71.98 0.71 -2.51 16 2 C -0.12 -2.26 5.47 30.59 0.17 -2.09 16 3 C 0.14 3.97 2.57 44.99 0.12 4.09 16 4 H 0.05 1.86 7.58 -2.38 -0.02 1.84 16 5 C -0.16 -4.16 9.48 71.98 0.68 -3.48 16 6 N -0.72 -24.66 4.48 -445.79 -2.00 -26.66 16 7 C 0.56 26.41 7.69 86.67 0.67 27.08 16 8 O -0.58 -32.54 13.22 -4.06 -0.05 -32.59 16 9 C -0.28 -13.95 5.92 -19.70 -0.12 -14.06 16 10 C -0.04 -1.66 9.53 22.50 0.21 -1.45 16 11 C -0.24 -9.31 10.03 22.40 0.22 -9.08 16 12 C -0.07 -3.09 10.01 22.26 0.22 -2.87 16 13 C -0.23 -11.65 7.87 22.72 0.18 -11.47 16 14 C 0.09 5.28 5.17 -21.11 -0.11 5.17 16 15 C -0.51 -30.27 7.65 23.41 0.18 -30.09 16 16 H 0.08 4.97 5.93 -2.91 -0.02 4.95 16 17 C 0.00 -0.17 5.04 85.37 0.43 0.26 16 18 N -0.82 -46.64 12.57 21.88 0.28 -46.36 16 19 Si 1.11 48.16 29.98 68.60 2.06 50.22 16 20 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 21 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 H 0.04 1.04 7.75 -2.38 -0.02 1.02 16 24 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.10 1.47 8.14 -2.38 -0.02 1.46 16 27 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.40 11.25 6.64 -92.71 -0.62 10.64 16 32 H 0.14 4.05 6.41 -2.91 -0.02 4.03 16 33 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 34 H 0.12 4.46 8.06 -2.91 -0.02 4.43 16 35 H 0.09 4.77 6.94 -2.91 -0.02 4.75 16 36 H 0.28 16.55 6.55 -92.71 -0.61 15.94 16 Total: -1.00 -70.13 298.74 4.47 -65.67 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: 0.62 Total: 30.22 kcal Atomic # 6 Polarization: -44.06 SS G_CDS: 3.56 Total: -40.49 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -1.72 Total: -73.02 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -0.05 Total: -32.59 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.06 Total: 50.22 kcal Total: -70.13 4.47 -65.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241912.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.381 kcal (2) G-P(sol) polarization free energy of solvation -70.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds