Wall clock time and date at job start Sun Mar 29 2020 23:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46990 * 2 1 4 4 C 1.46504 * 119.99881 * 269.99726 * 3 2 1 5 5 C 1.53000 * 109.47239 * 278.30065 * 4 3 2 6 6 C 1.34770 * 120.00125 * 90.00055 * 3 2 1 7 7 O 1.21549 * 120.00158 * 5.95506 * 6 3 2 8 8 C 1.47891 * 120.00006 * 185.95426 * 6 3 2 9 9 C 1.39915 * 120.02588 * 135.19891 * 8 6 3 10 10 C 1.38335 * 120.35956 * 180.02562 * 9 8 6 11 11 C 1.37758 * 120.40851 * 359.95190 * 10 9 8 12 12 C 1.40742 * 120.04132 * 0.04237 * 11 10 9 13 13 C 1.41441 * 120.17783 * 179.97438 * 12 11 10 14 14 H 1.07994 * 119.99619 * 148.12554 * 13 12 11 15 15 C 1.39930 * 120.00005 * 328.12822 * 13 12 11 16 16 N 1.30832 * 120.00034 * 345.18263 * 15 13 12 17 17 Si 1.86802 * 120.00235 * 165.18721 * 15 13 12 18 18 H 1.48499 * 109.46895 * 84.98642 * 17 15 13 19 19 H 1.48491 * 109.47021 * 204.98942 * 17 15 13 20 20 H 1.48504 * 109.46503 * 324.98795 * 17 15 13 21 21 C 1.38997 * 120.02227 * 315.21801 * 8 6 3 22 22 H 1.08994 * 109.47060 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47489 * 300.00451 * 1 2 3 24 24 H 1.09004 * 109.47136 * 60.00415 * 1 2 3 25 25 H 1.09004 * 109.47108 * 239.99858 * 2 1 3 26 26 H 1.08995 * 109.47003 * 119.99733 * 2 1 3 27 27 H 1.09006 * 109.46882 * 38.29825 * 4 3 2 28 28 H 1.08998 * 109.46999 * 158.29970 * 4 3 2 29 29 H 1.08998 * 109.47488 * 190.52611 * 5 4 3 30 30 H 1.08994 * 109.47106 * 310.53123 * 5 4 3 31 31 H 1.09002 * 109.47385 * 70.52493 * 5 4 3 32 32 H 1.07999 * 119.82489 * 0.02562 * 9 8 6 33 33 H 1.07995 * 119.79050 * 179.97438 * 10 9 8 34 34 H 1.08001 * 119.97603 * 180.02562 * 11 10 9 35 35 H 0.97003 * 120.00279 * 179.97438 * 16 15 13 36 36 H 1.07995 * 120.20614 * 359.69972 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6332 1.6664 -1.8145 6 6 2.2429 2.0166 1.1671 7 8 2.1450 1.4119 2.2170 8 6 2.6086 3.4496 1.1706 9 6 1.9984 4.3257 2.0748 10 6 2.3349 5.6674 2.0837 11 6 3.2749 6.1564 1.2034 12 6 3.8994 5.2903 0.2865 13 6 4.8646 5.7893 -0.6190 14 1 5.6819 5.1597 -0.9381 15 6 4.7604 7.0987 -1.1012 16 7 3.6417 7.7618 -0.9574 17 14 6.2184 7.9001 -1.9506 18 1 6.2232 7.5228 -3.3869 19 1 6.1133 9.3762 -1.8269 20 1 7.4776 7.4383 -1.3131 21 6 3.5585 3.9270 0.2751 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.4898 1.7968 -1.9867 28 1 2.2404 3.1494 -1.1060 29 1 3.8965 2.3126 -2.6519 30 1 4.3815 1.7672 -1.0285 31 1 3.5981 0.6306 -2.1520 32 1 1.2608 3.9524 2.7698 33 1 1.8579 6.3356 2.7853 34 1 3.5326 7.2052 1.2166 35 1 3.5696 8.6696 -1.2913 36 1 4.0353 3.2536 -0.4216 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058242661.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:14 Heat of formation + Delta-G solvation = -19.626536 kcal Electronic energy + Delta-G solvation = -18029.357697 eV Core-core repulsion = 15285.108096 eV Total energy + Delta-G solvation = -2744.249601 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.68528 -37.13586 -35.75159 -33.66742 -32.15196 -30.00986 -29.68265 -28.85799 -25.31218 -23.75892 -23.15274 -21.39594 -20.77347 -18.81015 -17.30332 -16.18925 -15.92750 -15.33381 -14.98836 -14.66873 -13.90467 -13.70000 -13.45294 -13.05998 -12.85724 -12.39246 -12.36198 -12.09386 -11.83548 -11.73756 -11.47947 -11.21118 -11.15228 -10.83968 -10.80565 -10.60904 -10.48442 -10.19754 -9.50614 -9.24787 -9.03559 -8.31746 -7.57804 -7.46646 -6.80151 -4.45540 2.33412 2.73036 3.04922 3.07022 3.12617 3.41712 3.65038 3.91042 4.57867 5.03215 5.28302 5.34634 5.46080 5.51419 5.54487 5.64369 5.78016 5.79310 6.04995 6.10482 6.17706 6.28011 6.30268 6.37942 6.50340 6.79838 6.88629 6.96395 7.02863 7.16860 7.35792 7.62947 7.78414 7.90853 7.94992 8.08946 8.49467 8.76994 8.79217 8.83432 10.17677 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.028437 B = 0.006696 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.391711 B = 4180.411224 C = 4815.264393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.111 3.889 3 N -0.613 5.613 4 C 0.092 3.908 5 C -0.170 4.170 6 C 0.568 3.432 7 O -0.555 6.555 8 C -0.114 4.114 9 C -0.179 4.179 10 C -0.114 4.114 11 C -0.134 4.134 12 C 0.106 3.894 13 C -0.470 4.470 14 H 0.078 0.922 15 C 0.078 3.922 16 N -0.802 5.802 17 Si 0.906 3.094 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.198 4.198 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.111 0.889 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.281 0.719 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.226 -6.955 -3.654 8.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.012 4.012 3 N -0.346 5.346 4 C -0.030 4.030 5 C -0.228 4.228 6 C 0.360 3.640 7 O -0.434 6.434 8 C -0.117 4.117 9 C -0.199 4.199 10 C -0.132 4.132 11 C -0.154 4.154 12 C 0.104 3.896 13 C -0.500 4.500 14 H 0.096 0.904 15 C -0.139 4.139 16 N -0.428 5.428 17 Si 0.731 3.269 18 H -0.195 1.195 19 H -0.202 1.202 20 H -0.186 1.186 21 C -0.218 4.218 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.129 0.871 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.132 0.868 35 H 0.091 0.909 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.393 -7.059 -3.173 8.100 hybrid contribution 0.525 0.500 -0.555 0.913 sum -1.868 -6.558 -3.728 7.772 Atomic orbital electron populations 1.22126 0.96371 1.01580 1.02349 1.21302 0.94019 0.83296 1.02589 1.47949 1.66453 1.13633 1.06560 1.21916 0.96365 1.00438 0.84324 1.22269 0.97807 1.00891 1.01814 1.18998 0.74834 0.87620 0.82585 1.90661 1.52946 1.68210 1.31596 1.19314 1.01592 0.90697 1.00092 1.20357 1.04665 0.93311 1.01589 1.20651 0.98905 0.94295 0.99360 1.21412 0.98760 1.00083 0.95115 1.17532 0.91093 0.90359 0.90649 1.19447 1.09557 0.97276 1.23743 0.90394 1.25825 0.96145 0.96951 0.94967 1.69782 1.24496 1.11660 1.36888 0.86360 0.82225 0.78426 0.79920 1.19458 1.20229 1.18577 1.21740 1.01656 0.97153 1.01211 0.92057 0.92335 0.92662 0.91102 0.90185 0.91638 0.87138 0.91072 0.91588 0.93259 0.88670 0.88633 0.86785 0.90856 0.86605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 10.24 37.16 0.38 -1.71 16 2 C 0.11 1.56 6.18 -4.04 -0.02 1.54 16 3 N -0.61 -10.55 2.48 -174.78 -0.43 -10.98 16 4 C 0.09 1.44 5.59 -4.04 -0.02 1.41 16 5 C -0.17 -2.39 9.09 37.16 0.34 -2.05 16 6 C 0.57 12.09 7.28 -12.31 -0.09 12.00 16 7 O -0.56 -13.11 16.53 5.32 0.09 -13.02 16 8 C -0.11 -2.60 5.12 -105.04 -0.54 -3.14 16 9 C -0.18 -4.13 9.69 -38.92 -0.38 -4.50 16 10 C -0.11 -2.61 10.01 -39.72 -0.40 -3.01 16 11 C -0.13 -3.34 8.64 -38.81 -0.34 -3.67 16 12 C 0.11 2.66 5.49 -106.87 -0.59 2.08 16 13 C -0.47 -11.74 9.03 -37.73 -0.34 -12.08 16 14 H 0.08 1.87 7.89 -52.49 -0.41 1.45 16 15 C 0.08 1.87 5.15 -17.34 -0.09 1.78 16 16 N -0.80 -19.91 11.29 55.55 0.63 -19.28 16 17 Si 0.91 17.96 29.58 -169.99 -5.03 12.93 16 18 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 19 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 21 C -0.20 -4.55 7.12 -38.44 -0.27 -4.82 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 26 H 0.08 1.22 7.35 -51.93 -0.38 0.84 16 27 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 28 H 0.11 2.04 4.98 -51.93 -0.26 1.78 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.05 6.52 -51.93 -0.34 0.71 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 33 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 34 H 0.11 2.91 6.61 -52.49 -0.35 2.56 16 35 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 36 H 0.12 2.43 3.75 -52.49 -0.20 2.24 16 LS Contribution 298.23 15.07 4.49 4.49 Total: -1.00 -27.99 298.23 -7.48 -35.47 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -4.87 Total: 6.56 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -2.36 Total: -16.18 kcal Atomic # 7 Polarization: -30.46 SS G_CDS: 0.19 Total: -30.26 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.09 Total: -13.02 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.99 -7.48 -35.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058242661.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.846 kcal (2) G-P(sol) polarization free energy of solvation -27.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds