Wall clock time and date at job start Sun Mar 29 2020 23:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46990 * 2 1 4 4 C 1.46504 * 119.99881 * 269.99726 * 3 2 1 5 5 C 1.53000 * 109.47239 * 278.30065 * 4 3 2 6 6 C 1.34770 * 120.00125 * 90.00055 * 3 2 1 7 7 O 1.21549 * 120.00158 * 5.95506 * 6 3 2 8 8 C 1.47891 * 120.00006 * 185.95426 * 6 3 2 9 9 C 1.39915 * 120.02588 * 135.19891 * 8 6 3 10 10 C 1.38335 * 120.35956 * 180.02562 * 9 8 6 11 11 C 1.37758 * 120.40851 * 359.95190 * 10 9 8 12 12 C 1.40742 * 120.04132 * 0.04237 * 11 10 9 13 13 C 1.41441 * 120.17783 * 179.97438 * 12 11 10 14 14 H 1.07994 * 119.99619 * 148.12554 * 13 12 11 15 15 C 1.39930 * 120.00005 * 328.12822 * 13 12 11 16 16 N 1.30832 * 120.00034 * 345.18263 * 15 13 12 17 17 Si 1.86802 * 120.00235 * 165.18721 * 15 13 12 18 18 H 1.48499 * 109.46895 * 84.98642 * 17 15 13 19 19 H 1.48491 * 109.47021 * 204.98942 * 17 15 13 20 20 H 1.48504 * 109.46503 * 324.98795 * 17 15 13 21 21 C 1.38997 * 120.02227 * 315.21801 * 8 6 3 22 22 H 1.08994 * 109.47060 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47489 * 300.00451 * 1 2 3 24 24 H 1.09004 * 109.47136 * 60.00415 * 1 2 3 25 25 H 1.09004 * 109.47108 * 239.99858 * 2 1 3 26 26 H 1.08995 * 109.47003 * 119.99733 * 2 1 3 27 27 H 1.09006 * 109.46882 * 38.29825 * 4 3 2 28 28 H 1.08998 * 109.46999 * 158.29970 * 4 3 2 29 29 H 1.08998 * 109.47488 * 190.52611 * 5 4 3 30 30 H 1.08994 * 109.47106 * 310.53123 * 5 4 3 31 31 H 1.09002 * 109.47385 * 70.52493 * 5 4 3 32 32 H 1.07999 * 119.82489 * 0.02562 * 9 8 6 33 33 H 1.07995 * 119.79050 * 179.97438 * 10 9 8 34 34 H 1.08001 * 119.97603 * 180.02562 * 11 10 9 35 35 H 0.97003 * 120.00279 * 179.97438 * 16 15 13 36 36 H 1.07995 * 120.20614 * 359.69972 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6332 1.6664 -1.8145 6 6 2.2429 2.0166 1.1671 7 8 2.1450 1.4119 2.2170 8 6 2.6086 3.4496 1.1706 9 6 1.9984 4.3257 2.0748 10 6 2.3349 5.6674 2.0837 11 6 3.2749 6.1564 1.2034 12 6 3.8994 5.2903 0.2865 13 6 4.8646 5.7893 -0.6190 14 1 5.6819 5.1597 -0.9381 15 6 4.7604 7.0987 -1.1012 16 7 3.6417 7.7618 -0.9574 17 14 6.2184 7.9001 -1.9506 18 1 6.2232 7.5228 -3.3869 19 1 6.1133 9.3762 -1.8269 20 1 7.4776 7.4383 -1.3131 21 6 3.5585 3.9270 0.2751 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.4898 1.7968 -1.9867 28 1 2.2404 3.1494 -1.1060 29 1 3.8965 2.3126 -2.6519 30 1 4.3815 1.7672 -1.0285 31 1 3.5981 0.6306 -2.1520 32 1 1.2608 3.9524 2.7698 33 1 1.8579 6.3356 2.7853 34 1 3.5326 7.2052 1.2166 35 1 3.5696 8.6696 -1.2913 36 1 4.0353 3.2536 -0.4216 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058242661.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:14 Heat of formation + Delta-G solvation = -33.974411 kcal Electronic energy + Delta-G solvation = -18029.979868 eV Core-core repulsion = 15285.108096 eV Total energy + Delta-G solvation = -2744.871772 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.27437 -38.91363 -37.24220 -35.48536 -33.41350 -31.82334 -31.31965 -30.23627 -27.17621 -25.16570 -24.44207 -23.02150 -22.54124 -20.40410 -18.93978 -17.74796 -17.58348 -16.92386 -16.69040 -16.24950 -15.49935 -15.09214 -14.91438 -14.58228 -14.44089 -13.89523 -13.69103 -13.52065 -13.40364 -13.05450 -12.85178 -12.78653 -12.70970 -12.47329 -12.25207 -12.00627 -11.91649 -11.85135 -11.30089 -11.03907 -10.73628 -9.73181 -9.39777 -9.33093 -8.60682 -6.35866 0.53060 0.93871 1.43153 1.49136 1.56376 1.85275 2.11533 2.25262 2.76152 3.62737 3.68681 4.06796 4.20913 4.24812 4.36504 4.47942 4.50604 4.53450 4.63226 4.74782 4.93332 4.95335 4.99201 5.02567 5.09845 5.17322 5.26751 5.32942 5.38697 5.50388 5.69751 5.81315 5.97439 6.04562 6.21562 6.37554 6.61737 6.93010 6.94463 7.17595 8.39130 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.028437 B = 0.006696 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.391711 B = 4180.411224 C = 4815.264393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.104 3.896 3 N -0.602 5.602 4 C 0.089 3.911 5 C -0.164 4.164 6 C 0.563 3.437 7 O -0.587 6.587 8 C -0.121 4.121 9 C -0.192 4.192 10 C -0.112 4.112 11 C -0.158 4.158 12 C 0.080 3.920 13 C -0.497 4.497 14 H 0.080 0.920 15 C 0.040 3.960 16 N -0.832 5.832 17 Si 0.977 3.023 18 H -0.260 1.260 19 H -0.272 1.272 20 H -0.261 1.261 21 C -0.193 4.193 22 H 0.090 0.910 23 H 0.030 0.970 24 H 0.064 0.936 25 H 0.108 0.892 26 H 0.066 0.934 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.287 0.713 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.074 -8.048 -5.413 9.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.017 4.017 3 N -0.334 5.334 4 C -0.033 4.033 5 C -0.222 4.222 6 C 0.354 3.646 7 O -0.469 6.469 8 C -0.124 4.124 9 C -0.212 4.212 10 C -0.130 4.130 11 C -0.178 4.178 12 C 0.078 3.922 13 C -0.527 4.527 14 H 0.099 0.901 15 C -0.174 4.174 16 N -0.458 5.458 17 Si 0.799 3.201 18 H -0.184 1.184 19 H -0.196 1.196 20 H -0.185 1.185 21 C -0.213 4.213 22 H 0.109 0.891 23 H 0.049 0.951 24 H 0.084 0.916 25 H 0.126 0.874 26 H 0.084 0.916 27 H 0.117 0.883 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.121 0.879 33 H 0.137 0.863 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.258 -8.174 -4.963 9.826 hybrid contribution 0.403 0.766 -0.027 0.866 sum -1.856 -7.407 -4.991 9.122 Atomic orbital electron populations 1.22083 0.95034 1.03255 1.01435 1.21612 0.95093 0.81271 1.03728 1.48022 1.64793 1.14757 1.05785 1.22008 0.98570 0.98542 0.84131 1.22206 0.95881 1.02920 1.01179 1.18807 0.75248 0.87063 0.83498 1.90637 1.54771 1.68564 1.32896 1.19610 1.01187 0.92019 0.99621 1.20572 1.05080 0.93522 1.02035 1.20865 0.98250 0.94755 0.99160 1.21388 1.00339 0.99603 0.96422 1.17884 0.91774 0.91433 0.91147 1.19692 1.09969 0.98480 1.24536 0.90148 1.26622 0.98556 0.96943 0.95281 1.69840 1.26225 1.12198 1.37565 0.85280 0.78408 0.77438 0.79011 1.18441 1.19625 1.18538 1.21918 1.01349 0.96704 1.01310 0.89141 0.95101 0.91647 0.87379 0.91582 0.88271 0.90355 0.90349 0.93784 0.90294 0.87934 0.86333 0.88117 0.90208 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 10.24 71.98 0.74 -2.88 16 2 C 0.10 2.67 6.18 86.38 0.53 3.20 16 3 N -0.60 -19.81 2.48 -825.16 -2.05 -21.86 16 4 C 0.09 2.61 5.59 86.38 0.48 3.09 16 5 C -0.16 -4.22 9.09 71.98 0.65 -3.56 16 6 C 0.56 23.95 7.28 86.80 0.63 24.58 16 7 O -0.59 -27.91 16.53 -3.87 -0.06 -27.98 16 8 C -0.12 -5.61 5.12 -20.13 -0.10 -5.71 16 9 C -0.19 -8.98 9.69 22.70 0.22 -8.76 16 10 C -0.11 -5.24 10.01 22.18 0.22 -5.01 16 11 C -0.16 -8.09 8.64 22.77 0.20 -7.89 16 12 C 0.08 4.11 5.49 -21.32 -0.12 3.99 16 13 C -0.50 -25.17 9.03 23.47 0.21 -24.96 16 14 H 0.08 3.89 7.89 -2.91 -0.02 3.86 16 15 C 0.04 1.94 5.15 85.25 0.44 2.38 16 16 N -0.83 -41.76 11.29 21.82 0.25 -41.51 16 17 Si 0.98 36.45 29.58 68.60 2.03 38.48 16 18 H -0.26 -9.24 7.11 99.48 0.71 -8.54 16 19 H -0.27 -9.79 7.11 99.48 0.71 -9.09 16 20 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 21 C -0.19 -9.03 7.12 23.01 0.16 -8.87 16 22 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.11 1.99 8.07 -2.38 -0.02 1.97 16 26 H 0.07 1.91 7.35 -2.39 -0.02 1.89 16 27 H 0.10 2.25 8.13 -2.38 -0.02 2.23 16 28 H 0.08 2.85 4.98 -2.39 -0.01 2.84 16 29 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.04 1.33 6.52 -2.39 -0.02 1.32 16 31 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.10 4.57 8.06 -2.91 -0.02 4.54 16 33 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 34 H 0.10 5.33 6.61 -2.91 -0.02 5.31 16 35 H 0.29 13.13 8.30 -92.71 -0.77 12.36 16 36 H 0.13 5.59 3.75 -2.91 -0.01 5.58 16 Total: -1.00 -61.51 298.23 5.51 -56.00 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 1.07 Total: 27.27 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: 4.27 Total: -30.40 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: -1.80 Total: -63.36 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.06 Total: -27.98 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 2.03 Total: 38.48 kcal Total: -61.51 5.51 -56.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058242661.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.022 kcal (2) G-P(sol) polarization free energy of solvation -61.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds