Wall clock time and date at job start Sun Mar 29 2020 23:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47291 * 2 1 4 4 C 1.52998 * 109.46743 * 120.00448 * 2 1 3 5 5 C 1.53001 * 109.46922 * 294.99711 * 4 2 1 6 6 N 1.46503 * 109.47360 * 180.02562 * 5 4 2 7 7 C 1.34776 * 120.00382 * 180.02562 * 6 5 4 8 8 O 1.21683 * 119.99792 * 359.97438 * 7 6 5 9 9 C 1.46375 * 119.99967 * 179.97438 * 7 6 5 10 10 H 1.08001 * 120.00306 * 353.94147 * 9 7 6 11 11 C 1.40047 * 119.99528 * 173.93699 * 9 7 6 12 12 N 1.30668 * 120.00356 * 6.15235 * 11 9 7 13 13 Si 1.86802 * 119.99662 * 186.15230 * 11 9 7 14 14 H 1.48500 * 109.47348 * 94.98653 * 13 11 9 15 15 H 1.48502 * 109.47056 * 214.98605 * 13 11 9 16 16 H 1.48498 * 109.47313 * 334.98150 * 13 11 9 17 17 C 1.50701 * 109.46925 * 239.99686 * 2 1 3 18 18 C 1.38233 * 120.00643 * 299.73031 * 17 2 1 19 19 C 1.38231 * 119.99995 * 179.79057 * 18 17 2 20 20 C 1.38225 * 120.00186 * 0.43765 * 19 18 17 21 21 C 1.38231 * 120.00198 * 359.81568 * 20 19 18 22 22 C 1.38238 * 120.00019 * 359.97438 * 21 20 19 23 23 H 1.09001 * 109.47127 * 59.99725 * 1 2 3 24 24 H 1.09001 * 109.47710 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47292 * 300.00189 * 1 2 3 26 26 H 1.09000 * 109.47856 * 54.99722 * 4 2 1 27 27 H 1.08998 * 109.47077 * 174.99901 * 4 2 1 28 28 H 1.09000 * 109.47212 * 299.99727 * 5 4 2 29 29 H 1.08998 * 109.47089 * 60.00197 * 5 4 2 30 30 H 0.97004 * 119.99426 * 359.97438 * 6 5 4 31 31 H 0.97001 * 119.99786 * 179.97438 * 12 11 9 32 32 H 1.08003 * 119.99735 * 359.97438 * 18 17 2 33 33 H 1.08005 * 119.99920 * 180.27895 * 19 18 17 34 34 H 1.08003 * 120.00452 * 179.83799 * 20 19 18 35 35 H 1.08010 * 120.00586 * 179.97438 * 21 20 19 36 36 H 1.07998 * 120.00293 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 1.6351 0.0688 2.4953 6 7 2.1238 -0.6215 3.6915 7 6 1.8830 -0.1055 4.9130 8 8 1.2601 0.9340 5.0224 9 6 2.3709 -0.7956 6.1082 10 1 2.8374 -1.7656 6.0191 11 6 2.2328 -0.1980 7.3672 12 7 1.5632 0.9172 7.4911 13 14 3.0059 -0.9952 8.8693 14 1 4.3383 -0.3896 9.1205 15 1 2.1324 -0.7770 10.0502 16 1 3.1614 -2.4527 8.6313 17 6 2.0323 -0.7105 -1.2304 18 6 1.7030 -2.0355 -1.4464 19 6 2.1602 -2.6859 -2.5773 20 6 2.9541 -2.0138 -3.4876 21 6 3.2878 -0.6903 -3.2691 22 6 2.8270 -0.0386 -2.1404 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.6052 -1.7199 1.2951 27 1 3.1262 -0.7996 1.2056 28 1 2.0698 1.0673 2.4495 29 1 0.5488 0.1471 2.5389 30 1 2.6201 -1.4504 3.6043 31 1 1.4673 1.3309 8.3633 32 1 1.0860 -2.5618 -0.7331 33 1 1.8992 -3.7199 -2.7483 34 1 3.3136 -2.5227 -4.3699 35 1 3.9085 -0.1653 -3.9801 36 1 3.0874 0.9955 -1.9698 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061911194.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:13 Heat of formation + Delta-G solvation = -37.461835 kcal Electronic energy + Delta-G solvation = -16924.676306 eV Core-core repulsion = 14179.653308 eV Total energy + Delta-G solvation = -2745.022998 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.60157 -37.41189 -35.78542 -33.03472 -32.19539 -30.98632 -29.89950 -28.02180 -26.08761 -24.10807 -22.78443 -21.80801 -19.85192 -19.55951 -17.07149 -16.92646 -15.49043 -15.36575 -15.14568 -14.51326 -14.41553 -14.02437 -13.58118 -13.31391 -13.28659 -12.98109 -12.32447 -12.25684 -12.07022 -11.48491 -11.43048 -11.19772 -11.12487 -10.97183 -10.73929 -10.51402 -10.42323 -10.24701 -10.16745 -8.99486 -8.81927 -8.74405 -7.57115 -7.43697 -6.16281 -4.60210 1.29710 1.32618 3.15818 3.22789 3.26473 3.71527 4.13296 4.59308 4.62725 4.73515 4.89106 4.94163 5.03161 5.15207 5.37350 5.40389 5.47321 5.51510 5.67326 5.77197 5.88391 5.90064 5.97111 6.00318 6.12446 6.18687 6.25795 6.41601 6.43450 6.59142 6.68493 6.72590 6.94047 7.46704 7.98038 8.15844 8.37518 9.05792 9.58858 10.63558 10.82537 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.045231 B = 0.003713 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.890098 B = 7538.799804 C = 7815.901946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.051 4.051 3 H 0.080 0.920 4 C -0.119 4.119 5 C 0.132 3.868 6 N -0.769 5.769 7 C 0.554 3.446 8 O -0.582 6.582 9 C -0.547 4.547 10 H 0.067 0.933 11 C 0.087 3.913 12 N -0.769 5.769 13 Si 0.907 3.093 14 H -0.273 1.273 15 H -0.279 1.279 16 H -0.265 1.265 17 C -0.067 4.067 18 C -0.114 4.114 19 C -0.120 4.120 20 C -0.131 4.131 21 C -0.121 4.121 22 C -0.119 4.119 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.379 0.621 31 H 0.268 0.732 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.032 -5.525 -18.706 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.070 4.070 3 H 0.098 0.902 4 C -0.157 4.157 5 C 0.007 3.993 6 N -0.425 5.425 7 C 0.358 3.642 8 O -0.466 6.466 9 C -0.585 4.585 10 H 0.086 0.914 11 C -0.132 4.132 12 N -0.398 5.398 13 Si 0.732 3.268 14 H -0.198 1.198 15 H -0.205 1.205 16 H -0.189 1.189 17 C -0.067 4.067 18 C -0.132 4.132 19 C -0.138 4.138 20 C -0.149 4.149 21 C -0.139 4.139 22 C -0.137 4.137 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.210 0.790 31 H 0.078 0.922 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.480 -4.588 -18.501 19.119 hybrid contribution 0.704 -0.815 0.609 1.238 sum 2.184 -5.403 -17.892 18.817 Atomic orbital electron populations 1.21908 0.94106 1.02158 1.02156 1.20135 0.96243 0.99237 0.91396 0.90179 1.21837 1.01110 0.99410 0.93332 1.20923 0.98585 0.95417 0.84379 1.46138 1.62464 1.28214 1.05637 1.18217 0.79597 0.84799 0.81597 1.90589 1.44288 1.25658 1.86019 1.20903 1.41764 1.05414 0.90377 0.91437 1.25708 0.93386 0.94299 0.99818 1.70032 1.30196 1.15364 1.24160 0.86369 0.79379 0.80193 0.80851 1.19828 1.20478 1.18907 1.19983 0.96658 0.94202 0.95887 1.21056 1.00203 0.94410 0.97517 1.21136 0.98208 0.99793 0.94687 1.21100 0.99272 0.94969 0.99558 1.21121 1.00141 0.94987 0.97625 1.21123 0.98119 1.00016 0.94462 0.92896 0.92551 0.91326 0.91621 0.91695 0.93607 0.93165 0.78959 0.92169 0.85987 0.86294 0.86465 0.86332 0.86110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.76 37.16 0.33 -1.42 16 2 C -0.05 -0.63 2.56 -91.77 -0.24 -0.87 16 3 H 0.08 0.99 7.88 -51.93 -0.41 0.58 16 4 C -0.12 -1.71 4.53 -26.73 -0.12 -1.83 16 5 C 0.13 2.55 5.43 -4.04 -0.02 2.53 16 6 N -0.77 -17.60 5.55 -61.72 -0.34 -17.94 16 7 C 0.55 16.15 7.74 -12.99 -0.10 16.05 16 8 O -0.58 -19.29 15.04 5.20 0.08 -19.21 16 9 C -0.55 -15.77 9.53 -35.63 -0.34 -16.11 16 10 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 11 C 0.09 2.48 5.49 -17.37 -0.10 2.39 16 12 N -0.77 -23.42 11.85 55.55 0.66 -22.76 16 13 Si 0.91 20.38 29.56 -169.99 -5.03 15.36 16 14 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 15 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 17 C -0.07 -0.79 4.78 -104.62 -0.50 -1.29 16 18 C -0.11 -1.27 8.76 -39.59 -0.35 -1.61 16 19 C -0.12 -1.20 10.05 -39.59 -0.40 -1.60 16 20 C -0.13 -1.25 10.05 -39.59 -0.40 -1.65 16 21 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 22 C -0.12 -1.30 9.67 -39.58 -0.38 -1.69 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.64 7.41 -51.93 -0.38 0.26 16 25 H 0.07 0.90 6.57 -51.93 -0.34 0.56 16 26 H 0.07 0.90 7.56 -51.93 -0.39 0.50 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.05 1.02 6.56 -51.93 -0.34 0.68 16 30 H 0.38 7.62 8.45 -40.82 -0.35 7.27 16 31 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 32 H 0.12 1.27 7.16 -52.48 -0.38 0.89 16 33 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 34 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 35 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 36 H 0.12 1.17 7.95 -52.49 -0.42 0.75 16 LS Contribution 305.02 15.07 4.60 4.60 Total: -1.00 -34.67 305.02 -8.13 -42.80 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -5.09 Total: 5.86 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -3.01 Total: -8.69 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.32 Total: -40.71 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: 0.08 Total: -19.21 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.36 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.67 -8.13 -42.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061911194.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.339 kcal (2) G-P(sol) polarization free energy of solvation -34.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds