Wall clock time and date at job start Sun Mar 29 2020 23:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47291 * 2 1 4 4 C 1.52998 * 109.46743 * 120.00448 * 2 1 3 5 5 C 1.53001 * 109.46922 * 294.99711 * 4 2 1 6 6 N 1.46503 * 109.47360 * 180.02562 * 5 4 2 7 7 C 1.34776 * 120.00382 * 180.02562 * 6 5 4 8 8 O 1.21683 * 119.99792 * 359.97438 * 7 6 5 9 9 C 1.46375 * 119.99967 * 179.97438 * 7 6 5 10 10 H 1.08001 * 120.00306 * 353.94147 * 9 7 6 11 11 C 1.40047 * 119.99528 * 173.93699 * 9 7 6 12 12 N 1.30668 * 120.00356 * 6.15235 * 11 9 7 13 13 Si 1.86802 * 119.99662 * 186.15230 * 11 9 7 14 14 H 1.48500 * 109.47348 * 94.98653 * 13 11 9 15 15 H 1.48502 * 109.47056 * 214.98605 * 13 11 9 16 16 H 1.48498 * 109.47313 * 334.98150 * 13 11 9 17 17 C 1.50701 * 109.46925 * 239.99686 * 2 1 3 18 18 C 1.38233 * 120.00643 * 299.73031 * 17 2 1 19 19 C 1.38231 * 119.99995 * 179.79057 * 18 17 2 20 20 C 1.38225 * 120.00186 * 0.43765 * 19 18 17 21 21 C 1.38231 * 120.00198 * 359.81568 * 20 19 18 22 22 C 1.38238 * 120.00019 * 359.97438 * 21 20 19 23 23 H 1.09001 * 109.47127 * 59.99725 * 1 2 3 24 24 H 1.09001 * 109.47710 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47292 * 300.00189 * 1 2 3 26 26 H 1.09000 * 109.47856 * 54.99722 * 4 2 1 27 27 H 1.08998 * 109.47077 * 174.99901 * 4 2 1 28 28 H 1.09000 * 109.47212 * 299.99727 * 5 4 2 29 29 H 1.08998 * 109.47089 * 60.00197 * 5 4 2 30 30 H 0.97004 * 119.99426 * 359.97438 * 6 5 4 31 31 H 0.97001 * 119.99786 * 179.97438 * 12 11 9 32 32 H 1.08003 * 119.99735 * 359.97438 * 18 17 2 33 33 H 1.08005 * 119.99920 * 180.27895 * 19 18 17 34 34 H 1.08003 * 120.00452 * 179.83799 * 20 19 18 35 35 H 1.08010 * 120.00586 * 179.97438 * 21 20 19 36 36 H 1.07998 * 120.00293 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 1.6351 0.0688 2.4953 6 7 2.1238 -0.6215 3.6915 7 6 1.8830 -0.1055 4.9130 8 8 1.2601 0.9340 5.0224 9 6 2.3709 -0.7956 6.1082 10 1 2.8374 -1.7656 6.0191 11 6 2.2328 -0.1980 7.3672 12 7 1.5632 0.9172 7.4911 13 14 3.0059 -0.9952 8.8693 14 1 4.3383 -0.3896 9.1205 15 1 2.1324 -0.7770 10.0502 16 1 3.1614 -2.4527 8.6313 17 6 2.0323 -0.7105 -1.2304 18 6 1.7030 -2.0355 -1.4464 19 6 2.1602 -2.6859 -2.5773 20 6 2.9541 -2.0138 -3.4876 21 6 3.2878 -0.6903 -3.2691 22 6 2.8270 -0.0386 -2.1404 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.6052 -1.7199 1.2951 27 1 3.1262 -0.7996 1.2056 28 1 2.0698 1.0673 2.4495 29 1 0.5488 0.1471 2.5389 30 1 2.6201 -1.4504 3.6043 31 1 1.4673 1.3309 8.3633 32 1 1.0860 -2.5618 -0.7331 33 1 1.8992 -3.7199 -2.7483 34 1 3.3136 -2.5227 -4.3699 35 1 3.9085 -0.1653 -3.9801 36 1 3.0874 0.9955 -1.9698 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061911194.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:13 Heat of formation + Delta-G solvation = -59.879721 kcal Electronic energy + Delta-G solvation = -16925.648418 eV Core-core repulsion = 14179.653308 eV Total energy + Delta-G solvation = -2745.995110 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.46839 -39.39304 -37.11114 -34.89193 -34.26758 -31.74995 -31.05858 -29.42948 -27.99097 -25.34259 -23.67214 -22.92591 -21.70304 -20.81051 -19.10739 -17.75541 -17.43242 -16.50968 -16.45754 -15.90578 -15.78173 -15.61478 -14.66718 -14.55737 -14.38362 -14.16785 -14.07028 -13.65614 -13.18636 -13.02622 -12.84197 -12.68213 -12.58093 -12.49852 -12.12374 -12.00458 -11.91199 -11.52488 -11.41015 -10.93294 -9.89071 -9.76664 -9.54658 -9.46778 -8.30200 -6.85665 0.50229 0.55370 1.40500 1.41919 1.58056 2.25236 2.46919 2.90550 3.16022 3.60577 3.70133 3.85101 4.15880 4.21016 4.25383 4.29007 4.37381 4.51102 4.54391 4.66863 4.71709 4.76268 4.98291 5.02785 5.09388 5.20275 5.21868 5.29223 5.32138 5.37047 5.64378 5.67696 5.80937 5.87952 6.17850 6.24452 6.28669 6.86407 7.55603 8.48853 8.67014 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.045231 B = 0.003713 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.890098 B = 7538.799804 C = 7815.901946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.045 4.045 3 H 0.077 0.923 4 C -0.101 4.101 5 C 0.134 3.866 6 N -0.757 5.757 7 C 0.535 3.465 8 O -0.635 6.635 9 C -0.576 4.576 10 H 0.088 0.912 11 C 0.027 3.973 12 N -0.823 5.823 13 Si 1.001 2.999 14 H -0.263 1.263 15 H -0.272 1.272 16 H -0.248 1.248 17 C -0.081 4.081 18 C -0.126 4.126 19 C -0.126 4.126 20 C -0.133 4.133 21 C -0.126 4.126 22 C -0.133 4.133 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.027 0.973 29 H 0.037 0.963 30 H 0.395 0.605 31 H 0.275 0.725 32 H 0.125 0.875 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.329 -7.530 -19.500 21.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.064 4.064 3 H 0.095 0.905 4 C -0.139 4.139 5 C 0.009 3.991 6 N -0.411 5.411 7 C 0.339 3.661 8 O -0.522 6.522 9 C -0.612 4.612 10 H 0.106 0.894 11 C -0.188 4.188 12 N -0.452 5.452 13 Si 0.820 3.180 14 H -0.188 1.188 15 H -0.197 1.197 16 H -0.171 1.171 17 C -0.082 4.082 18 C -0.144 4.144 19 C -0.144 4.144 20 C -0.151 4.151 21 C -0.144 4.144 22 C -0.151 4.151 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.229 0.771 31 H 0.085 0.915 32 H 0.143 0.857 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.794 -6.634 -19.353 20.649 hybrid contribution 0.289 -0.189 0.740 0.816 sum 3.083 -6.823 -18.614 20.063 Atomic orbital electron populations 1.21875 0.93943 1.02492 1.01756 1.20026 0.96369 0.98977 0.91026 0.90499 1.21688 1.01407 0.99221 0.91585 1.21029 0.97620 0.95234 0.85170 1.45843 1.61618 1.28503 1.05185 1.18655 0.79289 0.84471 0.83669 1.90541 1.46616 1.27859 1.87231 1.21457 1.42198 1.06485 0.91106 0.89369 1.27021 0.93310 0.94647 1.03833 1.70198 1.31819 1.17501 1.25706 0.84968 0.78220 0.79604 0.75227 1.18777 1.19698 1.17062 1.19893 0.97805 0.94668 0.95785 1.21198 1.00626 0.94300 0.98291 1.21431 0.97907 1.00819 0.94243 1.21461 0.98535 0.94945 1.00133 1.21425 1.00035 0.95383 0.97527 1.21316 0.98234 1.00574 0.94926 0.91741 0.91859 0.93211 0.90473 0.91230 0.95447 0.94429 0.77138 0.91541 0.85684 0.84334 0.84066 0.84261 0.85517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 8.76 71.98 0.63 -2.79 16 2 C -0.04 -1.10 2.56 -11.54 -0.03 -1.13 16 3 H 0.08 1.91 7.88 -2.39 -0.02 1.89 16 4 C -0.10 -2.85 4.53 30.59 0.14 -2.72 16 5 C 0.13 5.31 5.43 86.38 0.47 5.78 16 6 N -0.76 -35.14 5.55 -467.41 -2.59 -37.73 16 7 C 0.54 32.02 7.74 86.36 0.67 32.69 16 8 O -0.63 -43.87 15.04 -4.29 -0.06 -43.93 16 9 C -0.58 -33.34 9.53 24.83 0.24 -33.11 16 10 H 0.09 4.56 7.85 -2.91 -0.02 4.54 16 11 C 0.03 1.52 5.49 85.30 0.47 1.99 16 12 N -0.82 -51.31 11.85 21.83 0.26 -51.05 16 13 Si 1.00 41.41 29.56 68.60 2.03 43.44 16 14 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 15 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 16 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 17 C -0.08 -1.81 4.78 -19.86 -0.09 -1.91 16 18 C -0.13 -2.59 8.76 22.27 0.20 -2.40 16 19 C -0.13 -2.22 10.05 22.26 0.22 -2.00 16 20 C -0.13 -2.17 10.05 22.26 0.22 -1.95 16 21 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 22 C -0.13 -2.71 9.67 22.27 0.22 -2.50 16 23 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.06 1.40 7.41 -2.39 -0.02 1.38 16 25 H 0.05 1.36 6.57 -2.39 -0.02 1.34 16 26 H 0.08 2.01 7.56 -2.39 -0.02 2.00 16 27 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.04 1.59 6.56 -2.39 -0.02 1.57 16 30 H 0.40 15.69 8.45 -92.71 -0.78 14.90 16 31 H 0.27 15.44 8.29 -92.71 -0.77 14.67 16 32 H 0.13 2.40 7.16 -2.91 -0.02 2.38 16 33 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 36 H 0.13 2.33 7.95 -2.91 -0.02 2.30 16 Total: -1.00 -76.85 305.02 3.48 -73.36 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 0.29 Total: 27.89 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 3.57 Total: -11.98 kcal Atomic # 7 Polarization: -86.44 SS G_CDS: -2.34 Total: -88.78 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -0.06 Total: -43.93 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -76.85 3.48 -73.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061911194.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.485 kcal (2) G-P(sol) polarization free energy of solvation -76.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds