Wall clock time and date at job start Sun Mar 29 2020 23:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00118 * 2 1 4 4 H 1.48500 * 109.46921 * 270.00027 * 3 2 1 5 5 H 1.48500 * 109.47163 * 29.99695 * 3 2 1 6 6 H 1.48494 * 109.47628 * 149.99891 * 3 2 1 7 7 C 1.37882 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00242 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99798 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47239 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47473 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.47378 * 179.97438 * 11 10 9 13 13 C 1.47150 * 110.99738 * 169.99980 * 12 11 10 14 14 C 1.52986 * 108.60668 * 52.37471 * 13 12 11 15 15 C 1.50421 * 109.83196 * 50.10516 * 14 13 12 16 16 C 1.38781 * 119.47133 * 163.28720 * 15 14 13 17 17 N 1.32291 * 119.08083 * 179.79353 * 16 15 14 18 18 C 1.31814 * 120.69496 * 0.02562 * 17 16 15 19 19 N 1.31689 * 121.77879 * 0.05621 * 18 17 16 20 20 C 1.32710 * 120.88199 * 0.02562 * 19 18 17 21 21 C 1.46712 * 110.99990 * 293.17469 * 12 11 10 22 22 H 0.97001 * 120.00663 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47585 * 59.99116 * 9 7 2 24 24 H 1.09000 * 109.46916 * 299.99278 * 9 7 2 25 25 H 1.09004 * 109.47108 * 59.99559 * 10 9 7 26 26 H 1.09004 * 109.47368 * 299.99660 * 10 9 7 27 27 H 1.09004 * 109.46862 * 59.99962 * 11 10 9 28 28 H 1.09000 * 109.47250 * 299.99985 * 11 10 9 29 29 H 1.09006 * 109.60678 * 172.10643 * 13 12 11 30 30 H 1.08990 * 109.61560 * 292.63261 * 13 12 11 31 31 H 1.09002 * 109.40678 * 170.21428 * 14 13 12 32 32 H 1.09003 * 109.41069 * 290.06151 * 14 13 12 33 33 H 1.08008 * 120.46241 * 359.78860 * 16 15 14 34 34 H 1.07999 * 119.10981 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.32029 * 49.25718 * 21 12 11 36 36 H 1.09000 * 109.31909 * 168.71092 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1037 0.0006 13 6 1.7495 -7.3836 0.2397 14 6 0.5953 -7.5127 -0.7561 15 6 1.0902 -7.2364 -2.1495 16 6 0.3225 -7.6287 -3.2370 17 7 0.7632 -7.3782 -4.4590 18 6 1.9150 -6.7652 -4.6464 19 7 2.6686 -6.3812 -3.6370 20 6 2.2916 -6.6003 -2.3836 21 6 3.1854 -6.1531 -1.2591 22 1 -0.4851 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8895 24 1 0.6242 -2.5567 0.8904 25 1 2.8720 -3.6043 0.8905 26 1 2.8719 -3.6044 -0.8895 27 1 0.8534 -5.0450 -0.8886 28 1 0.8540 -5.0446 0.8914 29 1 2.4502 -8.2062 0.0964 30 1 1.3592 -7.4051 1.2571 31 1 0.1883 -8.5228 -0.7099 32 1 -0.1851 -6.7957 -0.5011 33 1 -0.6216 -8.1316 -3.0879 34 1 2.2500 -6.5732 -5.6550 35 1 3.5792 -5.1618 -1.4835 36 1 4.0147 -6.8531 -1.1576 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069512463.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:25:10 Heat of formation + Delta-G solvation = 39.762509 kcal Electronic energy + Delta-G solvation = -17735.286297 eV Core-core repulsion = 15025.904750 eV Total energy + Delta-G solvation = -2709.381548 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.49718 -38.52713 -34.25337 -34.04693 -32.66055 -31.12631 -30.22941 -27.31609 -25.45869 -24.31701 -23.42175 -22.81084 -20.55986 -19.49916 -17.77017 -16.98586 -16.32748 -15.65921 -15.28038 -15.15889 -14.49121 -14.28009 -14.19421 -13.75951 -13.40870 -12.94305 -12.69735 -12.32021 -12.03958 -11.75621 -11.46829 -11.27407 -10.85133 -10.78196 -10.53389 -10.47275 -10.44045 -9.68781 -9.39792 -9.34889 -9.25768 -9.06272 -8.33815 -8.28020 -5.98888 -4.00909 0.83447 0.99073 3.33478 3.39444 3.43243 3.67980 3.89297 4.03559 4.12209 4.42722 4.48305 4.60629 4.68566 4.96957 5.04812 5.29119 5.37116 5.40180 5.49413 5.54634 5.68371 5.72989 5.83401 5.91908 5.97504 6.25749 6.34652 6.61481 6.68144 6.87879 7.04794 7.20106 7.23582 7.68036 7.82033 8.00955 8.03555 8.44312 9.06107 9.63196 11.12658 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.026843 B = 0.005207 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.845415 B = 5376.483592 C = 5750.362575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.106 4.106 11 C 0.049 3.951 12 N -0.521 5.521 13 C 0.049 3.951 14 C -0.111 4.111 15 C -0.184 4.184 16 C 0.148 3.852 17 N -0.525 5.525 18 C 0.287 3.713 19 N -0.512 5.512 20 C 0.155 3.845 21 C 0.093 3.907 22 H 0.260 0.740 23 H 0.011 0.989 24 H 0.016 0.984 25 H 0.058 0.942 26 H 0.047 0.953 27 H 0.032 0.968 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.166 0.834 34 H 0.195 0.805 35 H 0.112 0.888 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.974 -17.654 -3.008 18.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.144 4.144 11 C -0.078 4.078 12 N -0.241 5.241 13 C -0.079 4.079 14 C -0.151 4.151 15 C -0.188 4.188 16 C -0.018 4.018 17 N -0.238 5.238 18 C -0.001 4.001 19 N -0.226 5.226 20 C 0.008 3.992 21 C -0.036 4.036 22 H 0.070 0.930 23 H 0.029 0.971 24 H 0.034 0.966 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.050 0.950 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.183 0.817 34 H 0.211 0.789 35 H 0.130 0.870 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.492 -17.262 -3.522 17.793 hybrid contribution -0.639 0.683 -0.089 0.940 sum 1.852 -16.579 -3.611 17.069 Atomic orbital electron populations 1.69961 1.06090 1.26571 1.51052 1.25026 0.94838 0.99281 0.95347 0.86595 0.79894 0.83445 0.78098 1.20703 1.21233 1.19788 1.21244 0.93072 0.90985 1.50332 0.92616 1.19052 0.93987 0.91440 0.96972 1.21682 0.99232 0.92609 1.00890 1.22423 0.93972 0.90903 1.00509 1.62792 1.27746 1.03446 1.30164 1.22297 0.94381 0.92332 0.98890 1.21044 1.00384 1.03005 0.90658 1.21152 0.97203 1.01946 0.98486 1.23154 0.98307 0.93184 0.87199 1.68408 1.15705 1.14692 1.25042 1.24922 0.86446 0.89875 0.98854 1.68411 1.35320 1.19224 0.99677 1.22380 0.92965 0.90036 0.93803 1.21236 0.94725 1.04095 0.83569 0.93044 0.97074 0.96570 0.92296 0.93432 0.95007 0.90700 0.90571 0.89344 0.89790 0.89339 0.81708 0.78880 0.86989 0.88261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.11 -2.20 5.12 -26.74 -0.14 -2.33 16 11 C 0.05 0.82 3.94 -3.82 -0.02 0.80 16 12 N -0.52 -7.24 5.01 -236.19 -1.18 -8.42 16 13 C 0.05 0.52 6.02 -3.69 -0.02 0.50 16 14 C -0.11 -1.14 5.21 -28.03 -0.15 -1.28 16 15 C -0.18 -2.32 5.05 -104.66 -0.53 -2.85 16 16 C 0.15 1.79 10.98 -17.15 -0.19 1.61 16 17 N -0.52 -7.11 10.44 -14.56 -0.15 -7.26 16 18 C 0.29 3.84 12.28 -92.23 -1.13 2.71 16 19 N -0.51 -7.67 10.35 -10.98 -0.11 -7.79 16 20 C 0.16 2.22 6.09 -82.45 -0.50 1.72 16 21 C 0.09 1.28 5.71 -5.20 -0.03 1.25 16 22 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 23 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.05 0.99 6.38 -51.93 -0.33 0.66 16 27 H 0.03 0.56 5.92 -51.93 -0.31 0.26 16 28 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 29 H 0.08 0.71 8.05 -51.93 -0.42 0.30 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.97 7.09 -51.93 -0.37 0.61 16 33 H 0.17 1.46 8.06 -52.48 -0.42 1.03 16 34 H 0.19 1.94 8.06 -52.49 -0.42 1.52 16 35 H 0.11 1.73 6.08 -51.93 -0.32 1.42 16 36 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 292.50 15.07 4.41 4.41 Total: -1.00 -32.33 292.50 -9.66 -41.99 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -5.08 Total: -2.21 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -3.25 Total: -11.08 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: -0.71 Total: -50.05 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.33 -9.66 -41.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069512463.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.755 kcal (2) G-P(sol) polarization free energy of solvation -32.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds