Wall clock time and date at job start Sun Mar 29 2020 23:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46495 * 109.47130 * 2 1 4 4 C 1.36870 * 119.99997 * 273.96942 * 3 2 1 5 5 H 1.08005 * 119.99665 * 173.94929 * 4 3 2 6 6 C 1.39041 * 120.00088 * 353.95285 * 4 3 2 7 7 N 1.31365 * 120.00302 * 34.07970 * 6 4 3 8 8 Si 1.86799 * 120.00111 * 214.07445 * 6 4 3 9 9 H 1.48504 * 109.46761 * 85.00118 * 8 6 4 10 10 H 1.48498 * 109.47606 * 204.99692 * 8 6 4 11 11 H 1.48500 * 109.47459 * 325.00381 * 8 6 4 12 12 C 1.34783 * 120.00123 * 93.96633 * 3 2 1 13 13 O 1.21589 * 120.00187 * 179.97438 * 12 3 2 14 14 C 1.47725 * 119.99595 * 0.02562 * 12 3 2 15 15 C 1.39649 * 120.15180 * 90.23403 * 14 12 3 16 16 C 1.50695 * 120.07640 * 359.97438 * 15 14 12 17 17 C 1.37933 * 119.84223 * 180.22556 * 15 14 12 18 18 C 1.38372 * 120.15349 * 359.51208 * 17 15 14 19 19 C 1.38372 * 120.30977 * 0.28240 * 18 17 15 20 20 C 1.37942 * 120.14587 * 359.94947 * 19 18 17 21 21 C 1.50706 * 120.07321 * 180.02562 * 20 19 18 22 22 H 1.08995 * 109.47204 * 300.00121 * 1 2 3 23 23 H 1.09005 * 109.47010 * 60.00471 * 1 2 3 24 24 H 1.09000 * 109.46654 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47204 * 239.99878 * 2 1 3 26 26 H 1.09003 * 109.46875 * 120.00062 * 2 1 3 27 27 H 0.97000 * 120.00849 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.47426 * 270.23114 * 16 15 14 29 29 H 1.09001 * 109.47302 * 30.23204 * 16 15 14 30 30 H 1.08999 * 109.47132 * 150.23412 * 16 15 14 31 31 H 1.08008 * 119.92071 * 179.79071 * 17 15 14 32 32 H 1.08001 * 119.84761 * 180.25009 * 18 17 15 33 33 H 1.07996 * 119.93230 * 179.97438 * 19 18 17 34 34 H 1.09002 * 109.46598 * 90.00268 * 21 20 19 35 35 H 1.08994 * 109.47191 * 209.99853 * 21 20 19 36 36 H 1.08999 * 109.47335 * 330.00238 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1692 2.0537 -1.1825 5 1 2.4348 3.1006 -1.1782 6 6 1.9803 1.3893 -2.3892 7 7 1.0795 0.4375 -2.4810 8 14 3.0073 1.8501 -3.8799 9 1 4.2964 1.1138 -3.8396 10 1 2.2710 1.4914 -5.1185 11 1 3.2714 3.3114 -3.8666 12 6 2.3192 1.9896 1.1644 13 8 2.7249 3.1358 1.1644 14 6 2.1569 1.2635 2.4406 15 6 3.2173 0.5216 2.9653 16 6 4.5315 0.4587 2.2305 17 6 3.0573 -0.1577 4.1550 18 6 1.8529 -0.0971 4.8335 19 6 0.7993 0.6396 4.3216 20 6 0.9440 1.3200 3.1304 21 6 -0.2043 2.1223 2.5747 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3632 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 0.9480 -0.0263 -3.3227 28 1 4.5206 -0.3827 1.5377 29 1 4.6819 1.3846 1.6752 30 1 5.3425 0.3289 2.9470 31 1 3.8755 -0.7347 4.5602 32 1 1.7343 -0.6277 5.7667 33 1 -0.1382 0.6824 4.8560 34 1 -0.1511 3.1430 2.9533 35 1 -0.1456 2.1350 1.4864 36 1 -1.1467 1.6692 2.8825 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074724935.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:13:24 Heat of formation + Delta-G solvation = -4.190766 kcal Electronic energy + Delta-G solvation = -18736.655847 eV Core-core repulsion = 15993.075591 eV Total energy + Delta-G solvation = -2743.580256 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.72546 -37.56122 -35.01536 -33.19664 -32.08984 -31.16297 -29.36779 -27.34702 -26.27884 -24.99491 -22.67079 -21.77825 -20.26034 -19.10205 -16.89208 -16.39160 -15.44009 -15.29439 -14.64536 -14.28541 -13.68728 -13.47994 -13.20177 -12.94926 -12.61405 -12.56318 -12.49442 -12.24983 -11.78169 -11.56249 -11.29389 -11.22411 -11.04180 -10.84233 -10.67555 -10.57045 -10.32895 -10.15673 -9.78911 -8.73840 -8.52490 -8.19789 -8.08708 -7.85352 -6.47401 -3.73173 1.67930 1.74546 3.14479 3.26744 3.31350 3.84642 4.02628 4.15709 4.86233 5.00499 5.17540 5.22865 5.26424 5.51438 5.67687 5.79016 5.93313 5.99551 6.06335 6.10373 6.19112 6.23399 6.36397 6.48722 6.61431 6.65799 6.71197 6.78734 6.88613 6.90229 7.09309 7.28418 7.36321 7.46233 7.75216 8.09707 8.49685 9.16252 9.43012 10.00995 10.53831 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.029084 B = 0.008131 C = 0.007539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.494526 B = 3442.848097 C = 3713.193344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.119 3.881 3 N -0.426 5.426 4 C -0.321 4.321 5 H 0.107 0.893 6 C 0.043 3.957 7 N -0.845 5.845 8 Si 0.906 3.094 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.478 3.522 13 O -0.591 6.591 14 C -0.080 4.080 15 C -0.060 4.060 16 C -0.117 4.117 17 C -0.133 4.133 18 C -0.117 4.117 19 C -0.132 4.132 20 C -0.054 4.054 21 C -0.123 4.123 22 H 0.035 0.965 23 H 0.092 0.908 24 H 0.034 0.966 25 H 0.095 0.905 26 H 0.035 0.965 27 H 0.268 0.732 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.396 -4.995 8.608 9.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.004 4.004 3 N -0.143 5.143 4 C -0.448 4.448 5 H 0.125 0.875 6 C -0.162 4.162 7 N -0.483 5.483 8 Si 0.732 3.268 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.194 1.194 12 C 0.267 3.733 13 O -0.477 6.477 14 C -0.084 4.084 15 C -0.061 4.061 16 C -0.174 4.174 17 C -0.151 4.151 18 C -0.136 4.136 19 C -0.150 4.150 20 C -0.055 4.055 21 C -0.179 4.179 22 H 0.053 0.947 23 H 0.111 0.889 24 H 0.053 0.947 25 H 0.113 0.887 26 H 0.054 0.946 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.299 -4.580 8.408 9.579 hybrid contribution 0.324 -0.091 -0.687 0.766 sum 0.026 -4.671 7.720 9.023 Atomic orbital electron populations 1.22249 0.96555 0.99914 1.02561 1.21543 0.94881 0.83562 1.00445 1.43783 1.53979 1.11655 1.04882 1.19620 1.46354 0.97116 0.81680 0.87512 1.25171 0.95726 0.96436 0.98907 1.70231 1.26053 1.25026 1.26983 0.86271 0.80751 0.79538 0.80241 1.20302 1.21238 1.19352 1.17632 0.85976 0.86863 0.82865 1.90617 1.52550 1.18065 1.86510 1.20033 0.93478 0.97855 0.96991 1.19962 0.95435 0.95653 0.95035 1.20821 0.93208 1.03580 0.99796 1.20845 0.97767 1.01011 0.95483 1.21045 0.93425 0.99521 0.99571 1.20855 0.98990 0.99156 0.96029 1.19928 0.94300 0.96912 0.94375 1.20979 0.95014 0.98963 1.02941 0.94654 0.88911 0.94664 0.88662 0.94644 0.92118 0.91120 0.90579 0.91888 0.86365 0.86520 0.86350 0.91270 0.89832 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 9.56 37.16 0.36 -2.96 16 2 C 0.12 2.72 5.28 -4.04 -0.02 2.70 16 3 N -0.43 -10.82 2.62 -115.93 -0.30 -11.12 16 4 C -0.32 -8.78 9.37 -15.00 -0.14 -8.92 16 5 H 0.11 3.13 7.36 -52.48 -0.39 2.74 16 6 C 0.04 1.09 4.91 -17.45 -0.09 1.00 16 7 N -0.85 -21.09 8.57 55.50 0.48 -20.62 16 8 Si 0.91 20.11 29.66 -169.99 -5.04 15.07 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 12 C 0.48 12.01 4.00 -12.38 -0.05 11.96 16 13 O -0.59 -17.00 16.68 5.29 0.09 -16.91 16 14 C -0.08 -1.69 3.85 -104.97 -0.40 -2.10 16 15 C -0.06 -1.11 5.51 -104.21 -0.57 -1.69 16 16 C -0.12 -2.03 9.62 36.00 0.35 -1.69 16 17 C -0.13 -2.04 9.69 -39.64 -0.38 -2.42 16 18 C -0.12 -1.68 10.04 -39.48 -0.40 -2.07 16 19 C -0.13 -2.04 9.69 -39.64 -0.38 -2.43 16 20 C -0.05 -1.02 5.64 -104.20 -0.59 -1.60 16 21 C -0.12 -2.19 8.41 36.01 0.30 -1.88 16 22 H 0.03 0.71 4.58 -51.93 -0.24 0.47 16 23 H 0.09 2.22 6.30 -51.93 -0.33 1.90 16 24 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.10 2.31 5.88 -51.93 -0.31 2.00 16 26 H 0.04 0.76 6.42 -51.93 -0.33 0.42 16 27 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.08 1.54 7.09 -51.93 -0.37 1.17 16 30 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 31 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 32 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 33 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.08 1.74 5.31 -51.93 -0.28 1.46 16 36 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 LS Contribution 290.42 15.07 4.38 4.38 Total: -1.00 -29.49 290.42 -7.17 -36.67 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -4.74 Total: 4.64 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -2.02 Total: -12.10 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: 0.17 Total: -31.74 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: 0.09 Total: -16.91 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.04 Total: 15.07 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.49 -7.17 -36.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074724935.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.476 kcal (2) G-P(sol) polarization free energy of solvation -29.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds