Wall clock time and date at job start Sun Mar 29 2020 22:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47097 * 2 1 4 4 N 1.46498 * 109.47495 * 119.99999 * 2 1 3 5 5 C 1.46504 * 120.00129 * 300.00289 * 4 2 1 6 6 C 1.34781 * 120.00215 * 119.99996 * 4 2 1 7 7 O 1.21549 * 119.99291 * 354.38947 * 6 4 2 8 8 C 1.47882 * 120.00009 * 174.39181 * 6 4 2 9 9 C 1.39920 * 120.02262 * 147.08448 * 8 6 4 10 10 C 1.38325 * 120.36083 * 180.02562 * 9 8 6 11 11 C 1.37754 * 120.40948 * 0.02562 * 10 9 8 12 12 C 1.40746 * 120.04015 * 359.97438 * 11 10 9 13 13 C 1.41435 * 120.17777 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99944 * 150.18651 * 13 12 11 15 15 C 1.39933 * 120.00302 * 330.18237 * 13 12 11 16 16 N 1.30832 * 119.99806 * 344.61162 * 15 13 12 17 17 Si 1.86796 * 120.00190 * 164.61136 * 15 13 12 18 18 H 1.48497 * 109.47270 * 90.00408 * 17 15 13 19 19 H 1.48508 * 109.47223 * 209.99874 * 17 15 13 20 20 H 1.48493 * 109.47179 * 330.00119 * 17 15 13 21 21 C 1.38992 * 120.02749 * 327.10646 * 8 6 4 22 22 H 1.08999 * 109.46745 * 299.99288 * 1 2 3 23 23 H 1.09000 * 109.47090 * 60.00139 * 1 2 3 24 24 H 1.09003 * 109.46969 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47317 * 240.00032 * 2 1 3 26 26 H 1.08996 * 109.47159 * 60.00077 * 3 2 1 27 27 H 1.09003 * 109.47360 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47065 * 300.00449 * 3 2 1 29 29 H 1.08996 * 109.46966 * 269.37111 * 5 4 2 30 30 H 1.09004 * 109.47025 * 29.36452 * 5 4 2 31 31 H 1.08993 * 109.46931 * 149.36645 * 5 4 2 32 32 H 1.08001 * 119.82290 * 0.02562 * 9 8 6 33 33 H 1.08006 * 119.79937 * 180.02562 * 10 9 8 34 34 H 1.08003 * 119.98196 * 179.97438 * 11 10 9 35 35 H 0.96998 * 119.99704 * 179.97438 * 16 15 13 36 36 H 1.07997 * 120.20058 * 359.70799 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6645 -0.1901 2.5268 6 6 2.7933 -1.7864 1.0725 7 8 3.0031 -2.2614 -0.0265 8 6 3.3882 -2.4108 2.2738 9 6 3.5773 -3.7963 2.3219 10 6 4.1326 -4.3877 3.4423 11 6 4.5053 -3.6200 4.5236 12 6 4.3228 -2.2247 4.4936 13 6 4.7050 -1.4337 5.6019 14 1 5.0260 -0.4134 5.4521 15 6 4.6672 -1.9728 6.8927 16 7 4.0075 -3.0795 7.1202 17 14 5.5583 -1.1124 8.2908 18 1 4.6414 -0.1403 8.9385 19 1 5.9991 -2.1185 9.2904 20 1 6.7429 -0.3946 7.7554 21 6 3.7595 -1.6218 3.3562 22 1 -0.3633 0.5137 0.8901 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 2.4216 0.5189 2.8614 30 1 0.6956 0.3072 2.4821 31 1 1.6130 -1.0241 3.2267 32 1 3.2881 -4.4074 1.4797 33 1 4.2748 -5.4580 3.4695 34 1 4.9379 -4.0890 5.3950 35 1 3.9816 -3.4535 8.0148 36 1 3.6194 -0.5515 3.3217 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078814787.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:02 Heat of formation + Delta-G solvation = -34.646943 kcal Electronic energy + Delta-G solvation = -17865.547860 eV Core-core repulsion = 15120.646925 eV Total energy + Delta-G solvation = -2744.900935 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.26782 -38.97676 -37.44146 -35.50908 -33.68931 -31.80015 -30.97893 -28.10043 -27.98740 -27.13545 -24.67306 -22.69559 -21.98438 -20.34326 -19.04276 -17.89632 -17.42338 -16.81817 -16.59893 -16.31967 -15.37942 -15.20430 -14.80310 -14.55519 -14.37026 -14.06931 -13.79695 -13.49977 -13.27751 -13.06441 -12.93642 -12.81673 -12.63349 -12.51337 -12.24847 -12.21101 -11.98523 -11.74713 -11.34360 -11.04575 -10.73307 -9.70200 -9.43554 -9.35261 -8.62095 -6.36282 0.44844 0.93755 1.42989 1.48941 1.56769 1.93838 2.08938 2.24609 2.76799 3.64810 3.67990 4.03500 4.14847 4.22708 4.33710 4.38328 4.53608 4.66960 4.71543 4.75683 4.89485 4.92412 4.98994 5.01738 5.03414 5.15390 5.25961 5.33013 5.34912 5.48274 5.69119 5.82438 5.97105 6.03247 6.20810 6.36989 6.60956 6.91794 6.93582 7.17341 8.37221 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.027592 B = 0.006234 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.529219 B = 4490.663352 C = 5166.573658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.120 3.880 3 C -0.152 4.152 4 N -0.603 5.603 5 C 0.077 3.923 6 C 0.561 3.439 7 O -0.589 6.589 8 C -0.123 4.123 9 C -0.189 4.189 10 C -0.113 4.113 11 C -0.157 4.157 12 C 0.076 3.924 13 C -0.496 4.496 14 H 0.081 0.919 15 C 0.039 3.961 16 N -0.830 5.830 17 Si 0.979 3.021 18 H -0.261 1.261 19 H -0.271 1.271 20 H -0.260 1.260 21 C -0.185 4.185 22 H 0.073 0.927 23 H 0.090 0.910 24 H 0.042 0.958 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.042 0.958 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.103 0.897 35 H 0.288 0.712 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.432 8.043 -4.421 10.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.018 3.982 3 C -0.210 4.210 4 N -0.334 5.334 5 C -0.065 4.065 6 C 0.352 3.648 7 O -0.471 6.471 8 C -0.126 4.126 9 C -0.210 4.210 10 C -0.132 4.132 11 C -0.177 4.177 12 C 0.074 3.926 13 C -0.525 4.525 14 H 0.100 0.900 15 C -0.176 4.176 16 N -0.456 5.456 17 Si 0.800 3.200 18 H -0.186 1.186 19 H -0.196 1.196 20 H -0.184 1.184 21 C -0.204 4.204 22 H 0.092 0.908 23 H 0.109 0.891 24 H 0.061 0.939 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.061 0.939 28 H 0.109 0.891 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.136 0.864 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.433 7.676 -4.807 10.562 hybrid contribution 0.462 -0.225 0.730 0.893 sum -4.970 7.451 -4.077 9.841 Atomic orbital electron populations 1.22092 0.92936 1.01988 1.04028 1.21281 0.95742 0.93795 0.87375 1.22090 1.00747 0.94147 1.04027 1.47909 1.49620 1.27272 1.08623 1.22146 1.01695 1.00200 0.82420 1.18822 0.77658 0.79888 0.88422 1.90621 1.63213 1.64316 1.28985 1.19583 1.04238 0.94735 0.94058 1.20615 1.08291 0.93296 0.98761 1.20876 0.99651 0.99128 0.93516 1.21429 1.03739 0.94890 0.97619 1.17895 0.89317 0.92716 0.92642 1.19734 1.41478 1.00013 0.91305 0.90041 1.26659 0.93295 0.95175 1.02425 1.69846 1.31675 1.19624 1.24495 0.85241 0.79267 0.78710 0.76756 1.18561 1.19567 1.18405 1.21731 1.05261 0.99206 0.94220 0.90782 0.89109 0.93902 0.90687 0.90900 0.93927 0.89115 0.91679 0.88478 0.91783 0.87911 0.86358 0.87850 0.90151 0.85626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.17 71.98 0.66 -2.45 16 2 C 0.12 3.20 3.25 44.99 0.15 3.35 16 3 C -0.15 -3.14 9.19 71.98 0.66 -2.48 16 4 N -0.60 -20.11 2.76 -825.95 -2.28 -22.39 16 5 C 0.08 2.24 7.87 127.77 1.01 3.25 16 6 C 0.56 24.05 7.39 86.80 0.64 24.69 16 7 O -0.59 -28.16 16.11 -3.87 -0.06 -28.23 16 8 C -0.12 -5.70 5.23 -20.14 -0.11 -5.81 16 9 C -0.19 -8.93 9.61 22.70 0.22 -8.71 16 10 C -0.11 -5.32 10.01 22.18 0.22 -5.10 16 11 C -0.16 -8.05 8.65 22.77 0.20 -7.85 16 12 C 0.08 3.94 5.51 -21.32 -0.12 3.82 16 13 C -0.50 -25.06 9.04 23.47 0.21 -24.85 16 14 H 0.08 3.92 7.89 -2.91 -0.02 3.90 16 15 C 0.04 1.87 5.15 85.25 0.44 2.31 16 16 N -0.83 -41.63 11.18 21.82 0.24 -41.38 16 17 Si 0.98 36.34 29.59 68.60 2.03 38.37 16 18 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 19 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 20 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 21 C -0.18 -8.58 7.41 23.01 0.17 -8.41 16 22 H 0.07 1.29 6.66 -2.39 -0.02 1.27 16 23 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.07 2.35 6.91 -2.38 -0.02 2.34 16 26 H 0.07 1.31 7.67 -2.39 -0.02 1.29 16 27 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.82 6.65 -2.39 -0.02 1.81 16 30 H 0.10 2.10 6.43 -2.39 -0.02 2.08 16 31 H 0.06 2.22 6.08 -2.39 -0.01 2.21 16 32 H 0.10 4.66 7.96 -2.91 -0.02 4.63 16 33 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 34 H 0.10 5.48 6.46 -2.91 -0.02 5.46 16 35 H 0.29 13.11 8.30 -92.71 -0.77 12.34 16 36 H 0.13 5.27 5.12 -2.91 -0.01 5.26 16 Total: -1.00 -61.49 295.20 5.36 -56.13 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 1.07 Total: 25.76 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: 4.35 Total: -28.25 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -2.04 Total: -63.77 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.06 Total: -28.23 kcal Atomic # 14 Polarization: 36.34 SS G_CDS: 2.03 Total: 38.37 kcal Total: -61.49 5.36 -56.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078814787.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.483 kcal (2) G-P(sol) polarization free energy of solvation -61.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds