Wall clock time and date at job start Sun Mar 29 2020 22:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47404 * 2 1 4 4 H 1.09002 * 109.47153 * 54.99686 * 3 2 1 5 5 C 1.53002 * 109.46817 * 294.99916 * 3 2 1 6 6 C 1.50701 * 109.47212 * 174.99684 * 3 2 1 7 7 C 1.38379 * 119.84326 * 59.72811 * 6 3 2 8 8 C 1.37944 * 120.14505 * 179.72297 * 7 6 3 9 9 C 1.39640 * 119.84917 * 0.52294 * 8 7 6 10 10 C 1.47725 * 120.15417 * 179.72572 * 9 8 7 11 11 O 1.21591 * 120.00492 * 180.02562 * 10 9 8 12 12 N 1.34776 * 119.99642 * 0.02582 * 10 9 8 13 13 C 1.36867 * 119.99926 * 180.02562 * 12 10 9 14 14 H 1.08005 * 120.00271 * 359.97438 * 13 12 10 15 15 C 1.39051 * 120.00072 * 179.97438 * 13 12 10 16 16 N 1.31361 * 120.00057 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99971 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.46933 * 90.00220 * 17 15 13 19 19 H 1.48499 * 109.47094 * 210.00159 * 17 15 13 20 20 H 1.48499 * 109.46907 * 329.99919 * 17 15 13 21 21 C 1.39650 * 119.69582 * 359.75338 * 9 8 7 22 22 C 1.37933 * 119.84767 * 359.97438 * 21 9 8 23 23 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47476 * 300.00087 * 1 2 3 25 25 H 1.09008 * 109.46970 * 60.00049 * 1 2 3 26 26 H 1.09000 * 109.47017 * 239.99643 * 2 1 3 27 27 H 1.09008 * 109.46970 * 119.99951 * 2 1 3 28 28 H 1.09000 * 109.46986 * 179.97438 * 5 3 2 29 29 H 1.09002 * 109.47075 * 299.99262 * 5 3 2 30 30 H 1.08996 * 109.47407 * 60.00219 * 5 3 2 31 31 H 1.07991 * 119.92698 * 0.02562 * 7 6 3 32 32 H 1.08004 * 120.07207 * 180.25527 * 8 7 6 33 33 H 0.97006 * 120.00169 * 359.97438 * 12 10 9 34 34 H 0.97003 * 119.99675 * 179.97438 * 16 15 13 35 35 H 1.08006 * 120.07507 * 179.97438 * 21 9 8 36 36 H 1.08003 * 119.92376 * 180.02562 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1264 -1.3074 6 6 3.5419 1.4442 0.1239 7 6 4.3127 0.8101 -0.8346 8 6 5.6882 0.8127 -0.7303 9 6 6.3020 1.4478 0.3512 10 6 7.7742 1.4496 0.4727 11 8 8.3059 2.0031 1.4158 12 7 8.5282 0.8376 -0.4619 13 6 9.8922 0.8388 -0.3491 14 1 10.3644 1.3304 0.4886 15 6 10.6701 0.2070 -1.3131 16 7 10.0958 -0.3914 -2.3318 17 14 12.5318 0.2092 -1.1595 18 1 12.9660 -0.9816 -0.3858 19 1 13.1402 0.1685 -2.5135 20 1 12.9691 1.4424 -0.4572 21 6 5.5177 2.0809 1.3178 22 6 4.1436 2.0754 1.1982 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8901 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8901 28 1 1.9982 3.1542 -1.3072 29 1 2.0700 1.5874 -2.1492 30 1 0.5490 2.1252 -1.3970 31 1 3.8365 0.3162 -1.6686 32 1 6.2888 0.3209 -1.4813 33 1 8.1041 0.3958 -1.2142 34 1 10.6385 -0.8318 -3.0044 35 1 5.9860 2.5737 2.1571 36 1 3.5358 2.5650 1.9449 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098124012.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:19 Heat of formation + Delta-G solvation = -56.779742 kcal Electronic energy + Delta-G solvation = -17161.827582 eV Core-core repulsion = 14415.966897 eV Total energy + Delta-G solvation = -2745.860685 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.99966 -39.55896 -36.79578 -36.13108 -33.55180 -32.01866 -31.80201 -29.72361 -27.31937 -25.69194 -23.80102 -23.53563 -21.46867 -20.51116 -20.20801 -18.36490 -17.22458 -16.48701 -16.26411 -15.76826 -15.65082 -15.56469 -15.14071 -14.83362 -14.55434 -14.17953 -13.76393 -13.60179 -13.46364 -13.04743 -12.85381 -12.80259 -12.57058 -12.43370 -12.14190 -12.03042 -11.65040 -11.60007 -11.50810 -11.29901 -10.53932 -10.16242 -9.89735 -9.59779 -8.58454 -6.04030 -0.00454 0.47410 1.38340 1.39130 1.53085 2.05855 2.24790 2.85500 3.10441 3.28199 3.71741 3.83336 4.06082 4.14223 4.23690 4.25936 4.49089 4.53241 4.58298 4.68823 4.77281 4.82840 4.95487 5.10875 5.12948 5.19392 5.22636 5.28682 5.30887 5.43954 5.45425 5.53082 5.60227 5.72097 5.90876 6.04121 6.47249 6.99144 7.40119 7.96984 8.58991 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.042179 B = 0.004392 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.676656 B = 6374.148615 C = 6788.196841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.047 4.047 4 H 0.090 0.910 5 C -0.145 4.145 6 C -0.061 4.061 7 C -0.114 4.114 8 C -0.103 4.103 9 C -0.134 4.134 10 C 0.461 3.539 11 O -0.641 6.641 12 N -0.552 5.552 13 C -0.341 4.341 14 H 0.083 0.917 15 C -0.009 4.009 16 N -0.911 5.911 17 Si 1.001 2.999 18 H -0.267 1.267 19 H -0.265 1.265 20 H -0.271 1.271 21 C -0.085 4.085 22 C -0.119 4.119 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.149 0.851 32 H 0.120 0.880 33 H 0.398 0.602 34 H 0.283 0.717 35 H 0.117 0.883 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.082 0.321 -0.430 19.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.066 4.066 4 H 0.108 0.892 5 C -0.202 4.202 6 C -0.062 4.062 7 C -0.131 4.131 8 C -0.123 4.123 9 C -0.138 4.138 10 C 0.251 3.749 11 O -0.531 6.531 12 N -0.187 5.187 13 C -0.471 4.471 14 H 0.101 0.899 15 C -0.210 4.210 16 N -0.550 5.550 17 Si 0.823 3.177 18 H -0.192 1.192 19 H -0.190 1.190 20 H -0.196 1.196 21 C -0.104 4.104 22 C -0.137 4.137 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.166 0.834 32 H 0.138 0.862 33 H 0.233 0.767 34 H 0.093 0.907 35 H 0.135 0.865 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -18.622 0.553 -0.025 18.630 hybrid contribution 1.273 -0.259 -0.264 1.326 sum -17.349 0.294 -0.288 17.354 Atomic orbital electron populations 1.21808 0.94387 1.02058 1.02481 1.21593 0.96826 0.94945 1.02119 1.20248 0.88410 0.97665 1.00236 0.89153 1.21907 1.02273 1.00118 0.95905 1.20346 0.96932 0.95408 0.93514 1.21103 0.91820 1.00097 1.00112 1.21418 0.96282 0.98151 0.96430 1.20065 0.91906 1.03229 0.98568 1.18641 0.87863 0.84038 0.84349 1.90523 1.75144 1.51750 1.35719 1.41894 1.06679 1.47285 1.22815 1.19812 0.82251 1.34966 1.10051 0.89931 1.26215 1.05678 0.94926 0.94189 1.69644 1.38840 1.34497 1.12036 0.84822 0.75613 0.78988 0.78272 1.19240 1.18951 1.19601 1.21242 0.94389 0.97289 0.97525 1.21248 0.92902 1.00455 0.99067 0.92470 0.92300 0.91658 0.91742 0.92666 0.93082 0.92473 0.90374 0.83363 0.86233 0.76667 0.90694 0.86501 0.82929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.67 71.98 0.70 -1.09 16 2 C -0.12 -1.84 5.14 30.59 0.16 -1.68 16 3 C -0.05 -0.80 2.56 -11.54 -0.03 -0.83 16 4 H 0.09 1.33 7.87 -2.39 -0.02 1.31 16 5 C -0.14 -2.18 8.76 71.98 0.63 -1.55 16 6 C -0.06 -1.50 4.79 -19.80 -0.09 -1.60 16 7 C -0.11 -3.12 8.74 22.23 0.19 -2.92 16 8 C -0.10 -3.72 9.54 22.54 0.22 -3.50 16 9 C -0.13 -5.77 5.87 -20.09 -0.12 -5.88 16 10 C 0.46 25.00 7.72 86.75 0.67 25.67 16 11 O -0.64 -39.24 15.92 -4.00 -0.06 -39.31 16 12 N -0.55 -30.73 5.23 -309.73 -1.62 -32.35 16 13 C -0.34 -20.23 9.68 84.10 0.81 -19.41 16 14 H 0.08 5.18 7.15 -2.91 -0.02 5.16 16 15 C -0.01 -0.48 5.50 84.96 0.47 -0.01 16 16 N -0.91 -49.49 13.05 21.68 0.28 -49.21 16 17 Si 1.00 43.06 29.55 68.60 2.03 45.08 16 18 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 19 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 C -0.08 -3.14 9.60 22.54 0.22 -2.93 16 22 C -0.12 -3.27 9.65 22.23 0.21 -3.05 16 23 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.06 0.67 6.57 -2.38 -0.02 0.66 16 26 H 0.06 1.02 7.54 -2.39 -0.02 1.00 16 27 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.88 7.39 -2.39 -0.02 0.86 16 30 H 0.08 0.89 6.56 -2.39 -0.02 0.87 16 31 H 0.15 3.20 7.14 -2.92 -0.02 3.18 16 32 H 0.12 4.36 6.41 -2.91 -0.02 4.34 16 33 H 0.40 20.84 5.93 -92.70 -0.55 20.29 16 34 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 35 H 0.12 4.55 7.65 -2.91 -0.02 4.52 16 36 H 0.15 3.14 7.94 -2.91 -0.02 3.12 16 Total: -1.00 -69.35 301.30 5.19 -64.16 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.53 Total: 30.41 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: 4.03 Total: -18.80 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -1.34 Total: -81.55 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -0.06 Total: -39.31 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -69.35 5.19 -64.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098124012.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.382 kcal (2) G-P(sol) polarization free energy of solvation -69.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds