Wall clock time and date at job start Sun Mar 29 2020 23:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46494 * 109.47254 * 2 1 4 4 C 1.36937 * 119.99785 * 269.63251 * 3 2 1 5 5 H 1.08004 * 120.00405 * 322.02377 * 4 3 2 6 6 C 1.38818 * 119.99766 * 142.02921 * 4 3 2 7 7 N 1.31619 * 120.00110 * 157.09510 * 6 4 3 8 8 Si 1.86801 * 119.99733 * 337.08832 * 6 4 3 9 9 H 1.48504 * 109.46913 * 95.70109 * 8 6 4 10 10 H 1.48500 * 109.46808 * 215.70197 * 8 6 4 11 11 H 1.48499 * 109.47325 * 335.70178 * 8 6 4 12 12 C 1.46505 * 120.00246 * 89.63937 * 3 2 1 13 13 C 1.50698 * 109.47338 * 89.99328 * 12 3 2 14 14 C 1.38284 * 120.11289 * 90.00108 * 13 12 3 15 15 C 1.37937 * 120.35265 * 180.17167 * 14 13 12 16 16 C 1.39290 * 120.23842 * 0.06788 * 15 14 13 17 17 C 1.38979 * 118.85868 * 359.58997 * 16 15 14 18 18 C 1.37671 * 120.77586 * 0.54573 * 17 16 15 19 19 C 1.51646 * 106.97939 * 180.57653 * 17 16 15 20 20 C 1.54709 * 101.93947 * 15.71311 * 19 17 16 21 21 O 1.36132 * 129.87456 * 179.56668 * 16 15 14 22 22 H 1.08999 * 109.47191 * 300.00703 * 1 2 3 23 23 H 1.08997 * 109.46917 * 60.00004 * 1 2 3 24 24 H 1.09003 * 109.47412 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47191 * 239.99297 * 2 1 3 26 26 H 1.09007 * 109.47093 * 119.99932 * 2 1 3 27 27 H 0.96991 * 119.99830 * 179.97438 * 7 6 4 28 28 H 1.09006 * 109.46572 * 329.99381 * 12 3 2 29 29 H 1.08995 * 109.47104 * 210.00023 * 12 3 2 30 30 H 1.08004 * 119.82551 * 0.20154 * 14 13 12 31 31 H 1.07997 * 119.88175 * 180.02562 * 15 14 13 32 32 H 1.07993 * 119.98018 * 179.62157 * 18 17 16 33 33 H 1.08996 * 110.94448 * 257.54009 * 19 17 16 34 34 H 1.09002 * 110.93905 * 133.88469 * 19 17 16 35 35 H 1.08995 * 110.74752 * 92.94715 * 20 19 17 36 36 H 1.09000 * 110.74680 * 216.11018 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2537 2.0241 -1.1859 5 1 2.6785 1.4830 -2.0186 6 6 1.9464 3.3714 -1.3179 7 7 2.5510 4.0976 -2.2341 8 14 0.6747 4.1535 -0.1952 9 1 1.3591 4.8012 0.9525 10 1 -0.0939 5.1735 -0.9530 11 1 -0.2522 3.1077 0.3072 12 6 2.2550 2.0745 1.2687 13 6 3.6756 1.8385 1.7128 14 6 4.6786 2.7052 1.3191 15 6 5.9812 2.4919 1.7198 16 6 6.2977 1.3997 2.5241 17 6 5.2796 0.5400 2.9190 18 6 3.9809 0.7537 2.5153 19 6 5.9148 -0.5300 3.7858 20 6 7.2856 0.1031 4.1228 21 8 7.5008 1.0014 3.0212 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.3360 5.0389 -2.3265 28 1 1.5695 1.6920 2.0251 29 1 2.0888 3.1434 1.1351 30 1 4.4408 3.5540 0.6950 31 1 6.7585 3.1739 1.4082 32 1 3.2008 0.0741 2.8247 33 1 6.0408 -1.4585 3.2290 34 1 5.3297 -0.6967 4.6902 35 1 7.2371 0.6509 5.0639 36 1 8.0640 -0.6589 4.1610 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111208030.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:41 Heat of formation + Delta-G solvation = -1.843258 kcal Electronic energy + Delta-G solvation = -18065.149273 eV Core-core repulsion = 15321.670812 eV Total energy + Delta-G solvation = -2743.478460 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.93923 -39.15667 -37.27426 -33.98195 -33.56286 -32.44679 -30.56281 -29.96874 -27.22460 -25.59851 -24.16815 -22.84103 -22.47005 -21.51781 -18.84471 -18.28540 -17.70393 -17.05165 -16.89430 -16.27652 -15.96403 -15.09279 -14.99214 -14.79491 -14.52635 -14.05334 -13.98001 -13.73500 -13.56339 -13.31972 -13.03610 -12.79786 -12.62933 -12.55190 -12.17910 -11.99814 -11.82476 -11.56403 -11.52727 -11.41260 -10.62227 -9.77098 -8.95701 -8.75158 -8.18253 -5.54658 0.40561 0.45461 1.30638 1.41538 1.52536 2.38630 2.43070 2.72012 3.13464 3.51442 3.55799 3.74826 3.99337 4.12991 4.22578 4.33625 4.41484 4.47374 4.54032 4.67915 4.69891 4.70847 4.84625 4.88293 4.94332 4.96795 5.07387 5.21570 5.27267 5.38744 5.44549 5.56554 5.73243 5.82243 5.97268 6.20569 6.31174 7.01138 7.65295 8.07924 9.01518 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.027425 B = 0.007244 C = 0.006327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.722507 B = 3864.368892 C = 4424.273922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.140 3.860 3 N -0.608 5.608 4 C -0.249 4.249 5 H 0.034 0.966 6 C -0.014 4.014 7 N -0.946 5.946 8 Si 0.931 3.069 9 H -0.276 1.276 10 H -0.311 1.311 11 H -0.250 1.250 12 C 0.172 3.828 13 C -0.120 4.120 14 C -0.082 4.082 15 C -0.151 4.151 16 C 0.078 3.922 17 C -0.181 4.181 18 C -0.064 4.064 19 C -0.100 4.100 20 C 0.045 3.955 21 O -0.328 6.328 22 H 0.045 0.955 23 H 0.029 0.971 24 H 0.074 0.926 25 H 0.039 0.961 26 H 0.068 0.932 27 H 0.262 0.738 28 H 0.079 0.921 29 H 0.038 0.962 30 H 0.102 0.898 31 H 0.125 0.875 32 H 0.144 0.856 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.771 -9.882 15.919 19.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.016 3.984 3 N -0.330 5.330 4 C -0.379 4.379 5 H 0.052 0.948 6 C -0.210 4.210 7 N -0.590 5.590 8 Si 0.760 3.240 9 H -0.204 1.204 10 H -0.240 1.240 11 H -0.173 1.173 12 C 0.047 3.953 13 C -0.123 4.123 14 C -0.101 4.101 15 C -0.170 4.170 16 C 0.033 3.967 17 C -0.182 4.182 18 C -0.083 4.083 19 C -0.137 4.137 20 C -0.029 4.029 21 O -0.243 6.243 22 H 0.065 0.935 23 H 0.049 0.951 24 H 0.093 0.907 25 H 0.057 0.943 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.056 0.944 30 H 0.120 0.880 31 H 0.143 0.857 32 H 0.162 0.838 33 H 0.117 0.883 34 H 0.133 0.867 35 H 0.107 0.893 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.982 -9.723 15.774 18.953 hybrid contribution -0.481 1.094 -0.425 1.268 sum 3.501 -8.630 15.349 17.953 Atomic orbital electron populations 1.22218 0.97950 1.01206 1.00552 1.21025 0.92946 0.84431 0.99998 1.44258 1.75437 1.12585 1.00741 1.18559 1.34715 0.93251 0.91379 0.94812 1.25987 0.99346 0.97417 0.98262 1.70015 1.42728 1.07238 1.39016 0.86035 0.81504 0.78074 0.78383 1.20360 1.23952 1.17323 1.20186 0.90914 0.96259 0.87896 1.20709 0.97936 0.96112 0.97535 1.20738 0.92260 0.99577 0.97568 1.20281 0.96629 0.97529 1.02581 1.19611 0.85310 0.94635 0.97169 1.21116 0.93932 0.98618 1.04517 1.20278 0.95244 0.96363 0.96367 1.21855 0.95197 0.96680 0.99954 1.24146 0.98304 0.92044 0.88381 1.86757 1.26188 1.63262 1.48125 0.93543 0.95132 0.90698 0.94262 0.91384 0.92948 0.90322 0.94383 0.87951 0.85696 0.83825 0.88336 0.86653 0.89348 0.85052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.36 10.24 71.98 0.74 -4.62 16 2 C 0.14 5.27 6.39 86.38 0.55 5.82 16 3 N -0.61 -28.02 2.05 -706.33 -1.45 -29.47 16 4 C -0.25 -14.09 9.90 84.04 0.83 -13.25 16 5 H 0.03 2.17 8.06 -2.91 -0.02 2.14 16 6 C -0.01 -0.78 5.29 84.86 0.45 -0.34 16 7 N -0.95 -59.26 13.97 21.65 0.30 -58.96 16 8 Si 0.93 45.76 25.10 68.60 1.72 47.48 16 9 H -0.28 -13.05 6.68 99.48 0.66 -12.38 16 10 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 11 H -0.25 -11.48 7.11 99.48 0.71 -10.77 16 12 C 0.17 7.17 4.65 85.63 0.40 7.57 16 13 C -0.12 -4.72 5.47 -19.83 -0.11 -4.82 16 14 C -0.08 -3.48 9.68 22.21 0.21 -3.27 16 15 C -0.15 -5.73 10.06 22.45 0.23 -5.50 16 16 C 0.08 2.62 7.04 22.70 0.16 2.78 16 17 C -0.18 -5.33 6.27 -19.52 -0.12 -5.45 16 18 C -0.06 -2.03 9.69 22.16 0.21 -1.82 16 19 C -0.10 -1.89 7.11 30.73 0.22 -1.67 16 20 C 0.05 0.82 8.01 72.56 0.58 1.40 16 21 O -0.33 -9.70 11.10 -95.05 -1.06 -10.75 16 22 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.04 1.54 8.04 -2.39 -0.02 1.52 16 26 H 0.07 2.13 8.08 -2.38 -0.02 2.11 16 27 H 0.26 15.58 8.31 -92.72 -0.77 14.81 16 28 H 0.08 2.76 8.02 -2.38 -0.02 2.74 16 29 H 0.04 1.77 3.32 -2.39 -0.01 1.76 16 30 H 0.10 4.86 8.06 -2.91 -0.02 4.83 16 31 H 0.13 4.40 8.06 -2.91 -0.02 4.37 16 32 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 33 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -69.27 297.90 4.88 -64.38 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 1.01 Total: 10.48 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: 4.35 Total: -23.17 kcal Atomic # 7 Polarization: -87.28 SS G_CDS: -1.15 Total: -88.43 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -1.06 Total: -10.75 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.72 Total: 47.48 kcal Total: -69.27 4.88 -64.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111208030.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.539 kcal (2) G-P(sol) polarization free energy of solvation -69.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds