Wall clock time and date at job start Sun Mar 29 2020 23:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46896 * 2 1 4 4 N 1.46496 * 109.46947 * 120.00176 * 2 1 3 5 5 C 1.34775 * 120.00012 * 275.00059 * 4 2 1 6 6 O 1.21686 * 120.00155 * 0.02562 * 5 4 2 7 7 C 1.46377 * 120.00081 * 179.97438 * 5 4 2 8 8 H 1.08003 * 120.00065 * 0.02562 * 7 5 4 9 9 C 1.40052 * 120.00192 * 179.97438 * 7 5 4 10 10 N 1.30673 * 119.99804 * 0.02562 * 9 7 5 11 11 Si 1.86798 * 120.00138 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46879 * 60.00389 * 11 9 7 13 13 H 1.48505 * 109.46962 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47251 * 300.00567 * 11 9 7 15 15 C 1.52995 * 109.47271 * 240.00246 * 2 1 3 16 16 H 1.09007 * 109.47429 * 303.89996 * 15 2 1 17 17 C 1.53000 * 109.47417 * 63.89562 * 15 2 1 18 18 C 1.50703 * 109.47429 * 183.89757 * 15 2 1 19 19 C 1.38233 * 119.99611 * 304.11669 * 18 15 2 20 20 C 1.38239 * 119.99801 * 179.78391 * 19 18 15 21 21 C 1.38237 * 119.99811 * 0.44071 * 20 19 18 22 22 C 1.38235 * 119.99954 * 359.80836 * 21 20 19 23 23 C 1.38234 * 120.00316 * 359.97438 * 22 21 20 24 24 H 1.09007 * 109.47111 * 174.39122 * 1 2 3 25 25 H 1.08998 * 109.47221 * 294.39404 * 1 2 3 26 26 H 1.09009 * 109.47192 * 54.39755 * 1 2 3 27 27 H 0.96998 * 119.99923 * 95.00077 * 4 2 1 28 28 H 0.96999 * 120.00164 * 180.02562 * 10 9 7 29 29 H 1.09007 * 109.46939 * 60.00090 * 17 15 2 30 30 H 1.08999 * 109.47066 * 179.97438 * 17 15 2 31 31 H 1.08999 * 109.47389 * 300.00355 * 17 15 2 32 32 H 1.07998 * 120.00108 * 359.97438 * 19 18 15 33 33 H 1.07997 * 120.00031 * 180.27079 * 20 19 18 34 34 H 1.07998 * 120.00187 * 179.83311 * 21 20 19 35 35 H 1.08003 * 119.99927 * 180.02562 * 22 21 20 36 36 H 1.07995 * 120.00079 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3571 6 8 1.8571 1.1622 2.4119 7 6 2.6343 -0.7085 3.5524 8 1 2.8912 -1.7564 3.5039 9 6 2.7686 -0.0098 4.7587 10 7 2.4583 1.2582 4.8173 11 14 3.3912 -0.8904 6.2839 12 1 4.7523 -1.4251 6.0257 13 1 3.4423 0.0641 7.4204 14 1 2.4746 -2.0101 6.6179 15 6 2.0400 -0.7212 -1.2492 16 1 1.6208 -1.7267 -1.2850 17 6 1.6117 0.0544 -2.4966 18 6 3.5440 -0.8054 -1.2019 19 6 4.2967 0.3461 -1.0662 20 6 5.6760 0.2685 -1.0183 21 6 6.3030 -0.9598 -1.1153 22 6 5.5504 -2.1107 -1.2562 23 6 4.1709 -2.0335 -1.2996 24 1 -0.3634 -1.0228 -0.1004 25 1 -0.3633 0.4244 0.9359 26 1 -0.3634 0.5983 -0.8356 27 1 2.2490 -1.6318 1.1525 28 1 2.5516 1.7423 5.6527 29 1 2.0309 1.0600 -2.4609 30 1 1.9754 -0.4591 -3.3865 31 1 0.5239 0.1154 -2.5308 32 1 3.8070 1.3060 -0.9944 33 1 6.2640 1.1676 -0.9079 34 1 7.3807 -1.0202 -1.0806 35 1 6.0401 -3.0703 -1.3316 36 1 3.5829 -2.9327 -1.4101 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153938885.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:42 Heat of formation + Delta-G solvation = -31.785664 kcal Electronic energy + Delta-G solvation = -18003.297491 eV Core-core repulsion = 15258.520631 eV Total energy + Delta-G solvation = -2744.776860 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.41352 -37.44157 -35.39833 -32.54994 -31.73538 -30.60500 -29.91799 -28.02540 -26.04388 -24.21434 -22.49168 -21.63260 -19.87386 -19.13020 -17.15496 -16.52316 -15.33017 -15.18380 -15.06762 -14.22212 -14.08022 -13.61552 -13.33652 -13.07203 -12.74710 -12.46988 -12.23863 -12.01725 -11.93762 -11.41368 -11.33756 -11.24712 -10.95846 -10.86288 -10.75909 -10.37878 -10.34189 -10.16991 -9.97636 -8.79011 -8.58438 -8.33473 -7.52460 -7.39033 -6.11904 -4.56473 1.69938 1.73741 3.18891 3.23410 3.25466 4.11208 4.15390 4.65792 4.82533 4.91666 5.15120 5.26978 5.33338 5.41258 5.58788 5.67089 5.78431 5.80306 5.85666 5.92300 6.03348 6.13925 6.21457 6.26968 6.33480 6.37111 6.39708 6.72068 6.76253 6.84067 6.91358 7.02713 7.33437 7.49334 8.02845 8.22060 8.41806 9.09325 9.64500 10.67610 10.87913 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.020194 B = 0.007498 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.214295 B = 3733.636743 C = 4550.715676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.160 3.840 3 H 0.075 0.925 4 N -0.758 5.758 5 C 0.560 3.440 6 O -0.582 6.582 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.089 3.911 10 N -0.769 5.769 11 Si 0.904 3.096 12 H -0.269 1.269 13 H -0.281 1.281 14 H -0.269 1.269 15 C -0.062 4.062 16 H 0.075 0.925 17 C -0.140 4.140 18 C -0.057 4.057 19 C -0.101 4.101 20 C -0.117 4.117 21 C -0.130 4.130 22 C -0.122 4.122 23 C -0.121 4.121 24 H 0.045 0.955 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.377 0.623 28 H 0.267 0.733 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.880 -5.499 -12.590 14.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.054 3.946 3 H 0.093 0.907 4 N -0.412 5.412 5 C 0.363 3.637 6 O -0.465 6.465 7 C -0.582 4.582 8 H 0.082 0.918 9 C -0.131 4.131 10 N -0.398 5.398 11 Si 0.729 3.271 12 H -0.194 1.194 13 H -0.206 1.206 14 H -0.193 1.193 15 C -0.081 4.081 16 H 0.094 0.906 17 C -0.197 4.197 18 C -0.057 4.057 19 C -0.119 4.119 20 C -0.135 4.135 21 C -0.148 4.148 22 C -0.140 4.140 23 C -0.139 4.139 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.208 0.792 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.648 -4.431 -12.427 13.457 hybrid contribution 0.488 -0.956 0.888 1.393 sum 3.137 -5.386 -11.540 13.115 Atomic orbital electron populations 1.22236 0.97080 1.00626 1.01842 1.20498 0.92582 0.97146 0.84374 0.90698 1.46103 1.72943 1.12669 1.09451 1.18113 0.77619 0.86305 0.81628 1.90583 1.54903 1.16438 1.84597 1.20853 1.46863 0.97030 0.93494 0.91755 1.25677 0.93365 0.94439 0.99584 1.70012 1.35515 1.08127 1.26187 0.86496 0.79897 0.79752 0.80951 1.19370 1.20603 1.19349 1.20537 0.91195 1.00462 0.95917 0.90614 1.21822 1.01375 1.00239 0.96312 1.19741 0.95071 0.93114 0.97814 1.20974 0.93696 0.98369 0.98883 1.21090 0.94779 0.97618 0.99997 1.21031 0.99410 0.92858 1.01517 1.21015 0.94039 0.98008 1.00912 1.20981 0.94542 0.96908 1.01456 0.93554 0.91847 0.93152 0.79153 0.92217 0.92404 0.92807 0.91974 0.86360 0.86531 0.86728 0.86654 0.86571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.07 37.16 0.34 -2.46 16 2 C 0.16 3.04 1.86 -67.93 -0.13 2.91 16 3 H 0.07 1.63 6.75 -51.93 -0.35 1.28 16 4 N -0.76 -17.03 4.56 -55.22 -0.25 -17.28 16 5 C 0.56 15.99 7.71 -12.99 -0.10 15.89 16 6 O -0.58 -18.82 14.68 5.20 0.08 -18.74 16 7 C -0.55 -15.71 9.54 -35.63 -0.34 -16.05 16 8 H 0.06 1.72 7.85 -52.48 -0.41 1.31 16 9 C 0.09 2.53 5.50 -17.36 -0.10 2.43 16 10 N -0.77 -23.43 11.83 55.55 0.66 -22.77 16 11 Si 0.90 20.63 29.56 -169.99 -5.02 15.61 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 13 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 14 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 15 C -0.06 -0.92 2.19 -91.77 -0.20 -1.12 16 16 H 0.08 1.03 7.88 -51.93 -0.41 0.62 16 17 C -0.14 -1.72 8.78 37.16 0.33 -1.39 16 18 C -0.06 -0.89 4.22 -104.62 -0.44 -1.34 16 19 C -0.10 -1.67 8.77 -39.58 -0.35 -2.02 16 20 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 16 21 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 22 C -0.12 -1.66 10.05 -39.58 -0.40 -2.06 16 23 C -0.12 -1.73 9.67 -39.58 -0.38 -2.11 16 24 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 25 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 26 H 0.05 0.75 6.82 -51.92 -0.35 0.39 16 27 H 0.38 7.78 8.52 -40.82 -0.35 7.43 16 28 H 0.27 7.42 8.29 -40.82 -0.34 7.08 16 29 H 0.06 0.72 7.64 -51.92 -0.40 0.33 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.70 6.66 -51.93 -0.35 0.36 16 32 H 0.12 1.99 7.15 -52.49 -0.38 1.61 16 33 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 36 H 0.12 1.42 7.95 -52.49 -0.42 1.00 16 LS Contribution 303.52 15.07 4.57 4.57 Total: -1.00 -34.00 303.52 -7.61 -41.62 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -5.08 Total: 8.73 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -2.56 Total: -11.74 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.41 Total: -40.05 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.08 Total: -18.74 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.00 -7.61 -41.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153938885.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.831 kcal (2) G-P(sol) polarization free energy of solvation -34.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds