Wall clock time and date at job start Sun Mar 29 2020 23:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46896 * 2 1 4 4 N 1.46496 * 109.46947 * 120.00176 * 2 1 3 5 5 C 1.34775 * 120.00012 * 275.00059 * 4 2 1 6 6 O 1.21686 * 120.00155 * 0.02562 * 5 4 2 7 7 C 1.46377 * 120.00081 * 179.97438 * 5 4 2 8 8 H 1.08003 * 120.00065 * 0.02562 * 7 5 4 9 9 C 1.40052 * 120.00192 * 179.97438 * 7 5 4 10 10 N 1.30673 * 119.99804 * 0.02562 * 9 7 5 11 11 Si 1.86798 * 120.00138 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46879 * 60.00389 * 11 9 7 13 13 H 1.48505 * 109.46962 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47251 * 300.00567 * 11 9 7 15 15 C 1.52995 * 109.47271 * 240.00246 * 2 1 3 16 16 H 1.09007 * 109.47429 * 303.89996 * 15 2 1 17 17 C 1.53000 * 109.47417 * 63.89562 * 15 2 1 18 18 C 1.50703 * 109.47429 * 183.89757 * 15 2 1 19 19 C 1.38233 * 119.99611 * 304.11669 * 18 15 2 20 20 C 1.38239 * 119.99801 * 179.78391 * 19 18 15 21 21 C 1.38237 * 119.99811 * 0.44071 * 20 19 18 22 22 C 1.38235 * 119.99954 * 359.80836 * 21 20 19 23 23 C 1.38234 * 120.00316 * 359.97438 * 22 21 20 24 24 H 1.09007 * 109.47111 * 174.39122 * 1 2 3 25 25 H 1.08998 * 109.47221 * 294.39404 * 1 2 3 26 26 H 1.09009 * 109.47192 * 54.39755 * 1 2 3 27 27 H 0.96998 * 119.99923 * 95.00077 * 4 2 1 28 28 H 0.96999 * 120.00164 * 180.02562 * 10 9 7 29 29 H 1.09007 * 109.46939 * 60.00090 * 17 15 2 30 30 H 1.08999 * 109.47066 * 179.97438 * 17 15 2 31 31 H 1.08999 * 109.47389 * 300.00355 * 17 15 2 32 32 H 1.07998 * 120.00108 * 359.97438 * 19 18 15 33 33 H 1.07997 * 120.00031 * 180.27079 * 20 19 18 34 34 H 1.07998 * 120.00187 * 179.83311 * 21 20 19 35 35 H 1.08003 * 119.99927 * 180.02562 * 22 21 20 36 36 H 1.07995 * 120.00079 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3571 6 8 1.8571 1.1622 2.4119 7 6 2.6343 -0.7085 3.5524 8 1 2.8912 -1.7564 3.5039 9 6 2.7686 -0.0098 4.7587 10 7 2.4583 1.2582 4.8173 11 14 3.3912 -0.8904 6.2839 12 1 4.7523 -1.4251 6.0257 13 1 3.4423 0.0641 7.4204 14 1 2.4746 -2.0101 6.6179 15 6 2.0400 -0.7212 -1.2492 16 1 1.6208 -1.7267 -1.2850 17 6 1.6117 0.0544 -2.4966 18 6 3.5440 -0.8054 -1.2019 19 6 4.2967 0.3461 -1.0662 20 6 5.6760 0.2685 -1.0183 21 6 6.3030 -0.9598 -1.1153 22 6 5.5504 -2.1107 -1.2562 23 6 4.1709 -2.0335 -1.2996 24 1 -0.3634 -1.0228 -0.1004 25 1 -0.3633 0.4244 0.9359 26 1 -0.3634 0.5983 -0.8356 27 1 2.2490 -1.6318 1.1525 28 1 2.5516 1.7423 5.6527 29 1 2.0309 1.0600 -2.4609 30 1 1.9754 -0.4591 -3.3865 31 1 0.5239 0.1154 -2.5308 32 1 3.8070 1.3060 -0.9944 33 1 6.2640 1.1676 -0.9079 34 1 7.3807 -1.0202 -1.0806 35 1 6.0401 -3.0703 -1.3316 36 1 3.5829 -2.9327 -1.4101 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153938885.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:42 Heat of formation + Delta-G solvation = -53.748102 kcal Electronic energy + Delta-G solvation = -18004.249854 eV Core-core repulsion = 15258.520631 eV Total energy + Delta-G solvation = -2745.729223 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.69170 -39.24088 -37.03935 -34.63550 -33.51358 -31.74412 -31.34308 -29.39154 -28.08539 -25.52414 -23.71600 -22.97927 -21.59887 -20.73526 -19.07561 -17.78352 -17.36210 -16.76834 -16.27752 -15.90189 -15.47813 -14.99143 -14.86949 -14.39290 -14.18855 -14.03909 -13.80815 -13.54634 -13.17521 -13.02001 -12.84523 -12.63664 -12.60060 -12.43269 -12.39596 -12.07257 -11.97407 -11.53990 -11.30869 -10.90723 -9.79299 -9.73143 -9.49065 -9.35802 -8.26047 -6.81663 0.55579 0.58592 1.37823 1.41743 1.52678 2.24711 2.51645 2.95934 3.17808 3.66293 3.76730 3.89389 4.15840 4.20591 4.32208 4.39827 4.51425 4.56234 4.62408 4.69491 4.77001 4.83515 5.03674 5.03974 5.12375 5.21156 5.22759 5.32928 5.36984 5.45485 5.66079 5.69015 5.82851 5.93133 6.21583 6.28725 6.41097 6.89693 7.63547 8.55427 8.73123 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.020194 B = 0.007498 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.214295 B = 3733.636743 C = 4550.715676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.159 3.841 3 H 0.037 0.963 4 N -0.744 5.744 5 C 0.546 3.454 6 O -0.632 6.632 7 C -0.576 4.576 8 H 0.081 0.919 9 C 0.029 3.971 10 N -0.823 5.823 11 Si 0.993 3.007 12 H -0.257 1.257 13 H -0.274 1.274 14 H -0.254 1.254 15 C -0.050 4.050 16 H 0.098 0.902 17 C -0.136 4.136 18 C -0.072 4.072 19 C -0.129 4.129 20 C -0.136 4.136 21 C -0.135 4.135 22 C -0.122 4.122 23 C -0.125 4.125 24 H 0.070 0.930 25 H 0.018 0.982 26 H 0.079 0.921 27 H 0.389 0.611 28 H 0.272 0.728 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.139 0.861 35 H 0.147 0.853 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.576 -8.459 -13.131 16.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.053 3.947 3 H 0.055 0.945 4 N -0.396 5.396 5 C 0.349 3.651 6 O -0.519 6.519 7 C -0.612 4.612 8 H 0.100 0.900 9 C -0.185 4.185 10 N -0.452 5.452 11 Si 0.812 3.188 12 H -0.181 1.181 13 H -0.199 1.199 14 H -0.178 1.178 15 C -0.069 4.069 16 H 0.117 0.883 17 C -0.193 4.193 18 C -0.072 4.072 19 C -0.147 4.147 20 C -0.154 4.154 21 C -0.153 4.153 22 C -0.140 4.140 23 C -0.143 4.143 24 H 0.089 0.911 25 H 0.037 0.963 26 H 0.098 0.902 27 H 0.222 0.778 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.141 0.859 34 H 0.157 0.843 35 H 0.164 0.836 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.338 -7.431 -13.024 15.362 hybrid contribution 0.289 -0.024 0.965 1.008 sum 3.627 -7.454 -12.058 14.633 Atomic orbital electron populations 1.22148 0.95794 1.02340 1.00716 1.20651 0.93524 0.95543 0.84966 0.94523 1.45762 1.71794 1.12974 1.09112 1.18431 0.77322 0.85918 0.83414 1.90539 1.57011 1.18576 1.85817 1.21392 1.47420 0.98033 0.94390 0.90043 1.26920 0.92876 0.95130 1.03609 1.70189 1.36961 1.10458 1.27637 0.85153 0.79666 0.78478 0.75497 1.18064 1.19864 1.17764 1.20462 0.90881 1.01203 0.94345 0.88331 1.21807 1.02239 0.99524 0.95755 1.19891 0.95426 0.93419 0.98470 1.21028 0.94630 0.98257 1.00820 1.21323 0.94551 0.98946 1.00545 1.21382 1.00887 0.92387 1.00625 1.21442 0.93996 0.99152 0.99431 1.21323 0.95289 0.97060 1.00646 0.91099 0.96258 0.90183 0.77790 0.91772 0.93539 0.90762 0.90555 0.88394 0.85919 0.84268 0.83569 0.83994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.29 9.07 71.98 0.65 -4.64 16 2 C 0.16 6.10 1.86 44.99 0.08 6.19 16 3 H 0.04 1.69 6.75 -2.39 -0.02 1.68 16 4 N -0.74 -33.88 4.56 -446.84 -2.04 -35.91 16 5 C 0.55 32.25 7.71 86.36 0.67 32.92 16 6 O -0.63 -43.12 14.68 -4.30 -0.06 -43.18 16 7 C -0.58 -33.57 9.54 24.83 0.24 -33.33 16 8 H 0.08 4.30 7.85 -2.91 -0.02 4.28 16 9 C 0.03 1.69 5.50 85.31 0.47 2.15 16 10 N -0.82 -51.68 11.83 21.84 0.26 -51.43 16 11 Si 0.99 42.18 29.56 68.60 2.03 44.21 16 12 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 13 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 14 H -0.25 -10.10 7.11 99.48 0.71 -9.40 16 15 C -0.05 -1.40 2.19 -11.54 -0.03 -1.43 16 16 H 0.10 2.34 7.88 -2.38 -0.02 2.32 16 17 C -0.14 -3.10 8.78 71.98 0.63 -2.47 16 18 C -0.07 -2.18 4.22 -19.87 -0.08 -2.26 16 19 C -0.13 -4.40 8.77 22.27 0.20 -4.21 16 20 C -0.14 -4.19 10.05 22.27 0.22 -3.96 16 21 C -0.13 -3.56 10.05 22.27 0.22 -3.33 16 22 C -0.12 -2.99 10.05 22.27 0.22 -2.76 16 23 C -0.13 -3.25 9.67 22.27 0.22 -3.04 16 24 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 25 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.08 2.29 6.82 -2.38 -0.02 2.27 16 27 H 0.39 15.75 8.52 -92.71 -0.79 14.96 16 28 H 0.27 15.57 8.29 -92.71 -0.77 14.80 16 29 H 0.05 1.16 7.64 -2.38 -0.02 1.14 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.52 6.66 -2.39 -0.02 1.50 16 32 H 0.10 3.60 7.15 -2.91 -0.02 3.58 16 33 H 0.12 3.44 8.06 -2.91 -0.02 3.42 16 34 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 35 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 36 H 0.14 2.89 7.95 -2.91 -0.02 2.86 16 Total: -1.00 -77.62 303.52 4.18 -73.44 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: 0.28 Total: 33.06 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: 3.71 Total: -20.18 kcal Atomic # 7 Polarization: -85.56 SS G_CDS: -1.78 Total: -87.34 kcal Atomic # 8 Polarization: -43.12 SS G_CDS: -0.06 Total: -43.18 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -77.62 4.18 -73.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153938885.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.694 kcal (2) G-P(sol) polarization free energy of solvation -77.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds