Wall clock time and date at job start Sun Mar 29 2020 23:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 5 5 C 1.53000 * 109.47060 * 294.99938 * 4 2 1 6 6 C 1.50703 * 109.47215 * 180.02562 * 5 4 2 7 7 O 1.21296 * 120.00027 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99951 * 179.97438 * 6 5 4 9 9 C 1.37102 * 119.99710 * 180.02562 * 8 6 5 10 10 H 1.07994 * 120.00102 * 0.02562 * 9 8 6 11 11 C 1.38951 * 119.99517 * 180.02562 * 9 8 6 12 12 N 1.31410 * 120.00442 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99596 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47170 * 90.00132 * 13 11 9 15 15 H 1.48501 * 109.47250 * 209.99857 * 13 11 9 16 16 H 1.48495 * 109.47400 * 330.00169 * 13 11 9 17 17 C 1.50699 * 109.46866 * 239.99781 * 2 1 3 18 18 C 1.38237 * 119.99936 * 299.72798 * 17 2 1 19 19 C 1.38239 * 120.00019 * 179.79019 * 18 17 2 20 20 C 1.38233 * 119.99539 * 0.43796 * 19 18 17 21 21 C 1.38231 * 120.00493 * 359.81540 * 20 19 18 22 22 C 1.38236 * 119.99974 * 359.97438 * 21 20 19 23 23 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 25 25 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 26 26 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 27 27 H 1.09000 * 109.47325 * 174.99723 * 4 2 1 28 28 H 1.08998 * 109.46849 * 299.99880 * 5 4 2 29 29 H 1.09000 * 109.47227 * 59.99725 * 5 4 2 30 30 H 0.96998 * 120.00136 * 0.02562 * 8 6 5 31 31 H 0.96997 * 120.00417 * 179.97438 * 12 11 9 32 32 H 1.07998 * 120.00490 * 359.97438 * 18 17 2 33 33 H 1.08000 * 120.00241 * 180.27418 * 19 18 17 34 34 H 1.08006 * 119.99896 * 179.83904 * 20 19 18 35 35 H 1.08002 * 120.00573 * 180.02562 * 21 20 19 36 36 H 1.08002 * 120.00273 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 0.0690 2.4953 6 6 2.1382 -0.6411 3.7258 7 8 2.7596 -1.6770 3.6168 8 7 1.8983 -0.1245 4.9472 9 6 2.3562 -0.7702 6.0666 10 1 2.9095 -1.6926 5.9695 11 6 2.1084 -0.2379 7.3259 12 7 1.4356 0.8847 7.4440 13 14 2.7317 -1.1180 8.8511 14 1 4.0930 -0.6269 9.1845 15 1 1.8157 -0.8472 9.9881 16 1 2.7822 -2.5796 8.5933 17 6 2.0323 -0.7105 -1.2304 18 6 1.7030 -2.0356 -1.4463 19 6 2.1601 -2.6860 -2.5772 20 6 2.9541 -2.0140 -3.4876 21 6 3.2878 -0.6905 -3.2691 22 6 2.8270 -0.0387 -2.1405 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6054 -1.7198 1.2952 27 1 3.1264 -0.7995 1.2056 28 1 2.0700 1.0675 2.4493 29 1 0.5490 0.1472 2.5389 30 1 1.4016 0.7041 5.0344 31 1 1.2622 1.2561 8.3232 32 1 1.0861 -2.5618 -0.7330 33 1 1.8991 -3.7200 -2.7481 34 1 3.3134 -2.5229 -4.3698 35 1 3.9077 -0.1652 -3.9806 36 1 3.0874 0.9955 -1.9699 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158459945.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:56 Heat of formation + Delta-G solvation = -40.160303 kcal Electronic energy + Delta-G solvation = -16985.570136 eV Core-core repulsion = 14240.430124 eV Total energy + Delta-G solvation = -2745.140012 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.54597 -38.18860 -35.68195 -33.88505 -31.31989 -30.92884 -30.74353 -28.69450 -25.67097 -24.20826 -22.78570 -22.08320 -19.75306 -18.96349 -17.80499 -16.87904 -15.87064 -15.40659 -15.01053 -14.59461 -14.48080 -13.98160 -13.65119 -13.44310 -13.26969 -13.14949 -12.47176 -12.14672 -12.13945 -11.64812 -11.43394 -11.39724 -11.11507 -10.98745 -10.62877 -10.48222 -10.37391 -10.20520 -10.14226 -9.48707 -8.91112 -8.66535 -8.32665 -7.93863 -6.39262 -3.79954 1.38040 1.40998 3.19324 3.27604 3.33824 3.79861 3.96489 4.19945 4.66894 4.81583 4.97443 5.02566 5.10303 5.22741 5.29487 5.42047 5.46875 5.56109 5.56886 5.72147 5.86452 5.93684 5.98903 6.07164 6.11084 6.17252 6.22575 6.46300 6.50114 6.53863 6.60356 6.72942 6.78825 7.02432 7.57480 8.09218 8.64356 9.20551 9.58658 10.10415 10.78568 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.047874 B = 0.003803 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.722131 B = 7361.333252 C = 7610.423991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.057 4.057 3 H 0.077 0.923 4 C -0.087 4.087 5 C -0.132 4.132 6 C 0.439 3.561 7 O -0.598 6.598 8 N -0.565 5.565 9 C -0.301 4.301 10 H 0.102 0.898 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.929 3.071 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.270 1.270 17 C -0.066 4.066 18 C -0.112 4.112 19 C -0.120 4.120 20 C -0.131 4.131 21 C -0.122 4.122 22 C -0.120 4.120 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.393 0.607 31 H 0.271 0.729 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.475 0.178 -18.005 18.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.075 4.075 3 H 0.095 0.905 4 C -0.125 4.125 5 C -0.172 4.172 6 C 0.226 3.774 7 O -0.483 6.483 8 N -0.200 5.200 9 C -0.430 4.430 10 H 0.120 0.880 11 C -0.180 4.180 12 N -0.544 5.544 13 Si 0.756 3.244 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.194 1.194 17 C -0.066 4.066 18 C -0.130 4.130 19 C -0.138 4.138 20 C -0.149 4.149 21 C -0.140 4.140 22 C -0.138 4.138 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.226 0.774 31 H 0.081 0.919 32 H 0.141 0.859 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.121 -0.410 -17.886 17.926 hybrid contribution 0.027 0.166 0.894 0.910 sum -1.094 -0.244 -16.992 17.029 Atomic orbital electron populations 1.21900 0.94405 1.02181 1.01730 1.20283 0.95992 0.99115 0.92156 0.90489 1.21291 1.01629 0.98816 0.90758 1.21548 1.01674 0.99815 0.94166 1.20036 0.85395 0.87429 0.84554 1.90510 1.45490 1.25712 1.86636 1.41931 1.49416 1.24035 1.04658 1.19727 1.32356 1.07495 0.83456 0.87999 1.25258 0.97136 0.96314 0.99260 1.69611 1.40263 1.19402 1.25109 0.85870 0.78387 0.79694 0.80412 1.20419 1.20929 1.19431 1.19963 0.96683 0.94248 0.95739 1.21078 1.00160 0.94388 0.97340 1.21142 0.98207 0.99765 0.94691 1.21091 0.99304 0.94969 0.99581 1.21098 1.00206 0.95010 0.97672 1.21094 0.98262 0.99948 0.94518 0.92469 0.91731 0.92991 0.91313 0.91415 0.90635 0.90354 0.77414 0.91904 0.85920 0.86299 0.86509 0.86401 0.86208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.76 37.16 0.33 -1.32 16 2 C -0.06 -0.72 2.56 -91.77 -0.24 -0.95 16 3 H 0.08 0.90 7.88 -51.93 -0.41 0.49 16 4 C -0.09 -1.40 3.71 -26.73 -0.10 -1.50 16 5 C -0.13 -2.31 5.46 -27.88 -0.15 -2.46 16 6 C 0.44 10.58 7.78 -10.98 -0.09 10.50 16 7 O -0.60 -16.58 15.56 5.54 0.09 -16.49 16 8 N -0.56 -14.63 5.29 -10.96 -0.06 -14.68 16 9 C -0.30 -8.55 9.68 -14.93 -0.14 -8.70 16 10 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 11 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 12 N -0.90 -24.87 13.05 55.50 0.72 -24.15 16 13 Si 0.93 21.31 29.55 -169.99 -5.02 16.28 16 14 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 C -0.07 -0.84 4.78 -104.62 -0.50 -1.34 16 18 C -0.11 -1.39 8.76 -39.58 -0.35 -1.74 16 19 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 20 C -0.13 -1.38 10.05 -39.59 -0.40 -1.77 16 21 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 22 C -0.12 -1.39 9.67 -39.58 -0.38 -1.77 16 23 H 0.06 0.65 7.41 -51.93 -0.38 0.26 16 24 H 0.06 0.72 6.56 -51.93 -0.34 0.38 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 1.18 7.51 -51.93 -0.39 0.79 16 27 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.08 1.23 6.56 -51.93 -0.34 0.89 16 30 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 31 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 32 H 0.12 1.47 7.16 -52.49 -0.38 1.10 16 33 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 34 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 36 H 0.12 1.19 7.95 -52.49 -0.42 0.78 16 LS Contribution 304.53 15.07 4.59 4.59 Total: -1.00 -31.58 304.53 -7.62 -39.20 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -5.03 Total: 9.24 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -2.91 Total: -13.99 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.67 Total: -38.83 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.09 Total: -16.49 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.58 -7.62 -39.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158459945.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.964 kcal (2) G-P(sol) polarization free energy of solvation -31.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds