Wall clock time and date at job start Sun Mar 29 2020 23:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 5 5 C 1.53000 * 109.47060 * 294.99938 * 4 2 1 6 6 C 1.50703 * 109.47215 * 180.02562 * 5 4 2 7 7 O 1.21296 * 120.00027 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99951 * 179.97438 * 6 5 4 9 9 C 1.37102 * 119.99710 * 180.02562 * 8 6 5 10 10 H 1.07994 * 120.00102 * 0.02562 * 9 8 6 11 11 C 1.38951 * 119.99517 * 180.02562 * 9 8 6 12 12 N 1.31410 * 120.00442 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99596 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47170 * 90.00132 * 13 11 9 15 15 H 1.48501 * 109.47250 * 209.99857 * 13 11 9 16 16 H 1.48495 * 109.47400 * 330.00169 * 13 11 9 17 17 C 1.50699 * 109.46866 * 239.99781 * 2 1 3 18 18 C 1.38237 * 119.99936 * 299.72798 * 17 2 1 19 19 C 1.38239 * 120.00019 * 179.79019 * 18 17 2 20 20 C 1.38233 * 119.99539 * 0.43796 * 19 18 17 21 21 C 1.38231 * 120.00493 * 359.81540 * 20 19 18 22 22 C 1.38236 * 119.99974 * 359.97438 * 21 20 19 23 23 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 25 25 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 26 26 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 27 27 H 1.09000 * 109.47325 * 174.99723 * 4 2 1 28 28 H 1.08998 * 109.46849 * 299.99880 * 5 4 2 29 29 H 1.09000 * 109.47227 * 59.99725 * 5 4 2 30 30 H 0.96998 * 120.00136 * 0.02562 * 8 6 5 31 31 H 0.96997 * 120.00417 * 179.97438 * 12 11 9 32 32 H 1.07998 * 120.00490 * 359.97438 * 18 17 2 33 33 H 1.08000 * 120.00241 * 180.27418 * 19 18 17 34 34 H 1.08006 * 119.99896 * 179.83904 * 20 19 18 35 35 H 1.08002 * 120.00573 * 180.02562 * 21 20 19 36 36 H 1.08002 * 120.00273 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 0.0690 2.4953 6 6 2.1382 -0.6411 3.7258 7 8 2.7596 -1.6770 3.6168 8 7 1.8983 -0.1245 4.9472 9 6 2.3562 -0.7702 6.0666 10 1 2.9095 -1.6926 5.9695 11 6 2.1084 -0.2379 7.3259 12 7 1.4356 0.8847 7.4440 13 14 2.7317 -1.1180 8.8511 14 1 4.0930 -0.6269 9.1845 15 1 1.8157 -0.8472 9.9881 16 1 2.7822 -2.5796 8.5933 17 6 2.0323 -0.7105 -1.2304 18 6 1.7030 -2.0356 -1.4463 19 6 2.1601 -2.6860 -2.5772 20 6 2.9541 -2.0140 -3.4876 21 6 3.2878 -0.6905 -3.2691 22 6 2.8270 -0.0387 -2.1405 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6054 -1.7198 1.2952 27 1 3.1264 -0.7995 1.2056 28 1 2.0700 1.0675 2.4493 29 1 0.5490 0.1472 2.5389 30 1 1.4016 0.7041 5.0344 31 1 1.2622 1.2561 8.3232 32 1 1.0861 -2.5618 -0.7330 33 1 1.8991 -3.7200 -2.7481 34 1 3.3134 -2.5229 -4.3698 35 1 3.9077 -0.1652 -3.9806 36 1 3.0874 0.9955 -1.9699 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158459945.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:55 Heat of formation + Delta-G solvation = -58.477941 kcal Electronic energy + Delta-G solvation = -16986.364448 eV Core-core repulsion = 14240.430124 eV Total energy + Delta-G solvation = -2745.934324 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.57594 -39.95854 -36.86039 -35.91244 -33.31502 -32.10499 -31.72478 -29.73448 -27.38101 -25.66025 -23.77970 -23.12234 -21.05924 -20.55745 -19.83910 -17.97016 -17.45958 -16.59016 -16.53219 -16.07097 -15.77318 -15.71796 -14.81381 -14.69908 -14.36421 -14.14294 -14.01345 -13.57185 -13.43295 -13.08364 -12.93666 -12.67202 -12.42493 -12.40389 -12.12707 -12.05915 -11.76434 -11.53334 -11.47918 -11.32236 -10.35694 -10.02700 -9.76376 -9.53177 -8.47869 -5.97042 0.51523 0.55558 1.37040 1.40579 1.53657 2.05423 2.29600 2.92377 3.19661 3.25366 3.77344 3.89484 4.18848 4.20978 4.22062 4.29701 4.36643 4.52492 4.59891 4.63091 4.71706 4.75966 4.83759 5.07017 5.09049 5.13926 5.23012 5.26066 5.39794 5.43194 5.44377 5.64914 5.67478 5.83119 5.99445 6.19058 6.58407 7.11063 7.55658 8.11480 8.69550 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.047874 B = 0.003803 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.722131 B = 7361.333252 C = 7610.423991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.046 4.046 3 H 0.091 0.909 4 C -0.078 4.078 5 C -0.119 4.119 6 C 0.433 3.567 7 O -0.640 6.640 8 N -0.573 5.573 9 C -0.339 4.339 10 H 0.077 0.923 11 C -0.012 4.012 12 N -0.920 5.920 13 Si 0.993 3.007 14 H -0.270 1.270 15 H -0.269 1.269 16 H -0.274 1.274 17 C -0.084 4.084 18 C -0.132 4.132 19 C -0.130 4.130 20 C -0.135 4.135 21 C -0.126 4.126 22 C -0.131 4.131 23 H 0.051 0.949 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.044 0.956 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.397 0.603 31 H 0.278 0.722 32 H 0.116 0.884 33 H 0.134 0.866 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.605 1.030 -18.880 18.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.065 4.065 3 H 0.109 0.891 4 C -0.116 4.116 5 C -0.159 4.159 6 C 0.222 3.778 7 O -0.528 6.528 8 N -0.210 5.210 9 C -0.468 4.468 10 H 0.095 0.905 11 C -0.212 4.212 12 N -0.560 5.560 13 Si 0.816 3.184 14 H -0.196 1.196 15 H -0.193 1.193 16 H -0.198 1.198 17 C -0.084 4.084 18 C -0.150 4.150 19 C -0.148 4.148 20 C -0.153 4.153 21 C -0.144 4.144 22 C -0.149 4.149 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.231 0.769 31 H 0.088 0.912 32 H 0.134 0.866 33 H 0.152 0.848 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.268 0.469 -18.772 18.821 hybrid contribution 0.085 -0.119 1.101 1.111 sum -1.183 0.350 -17.671 17.714 Atomic orbital electron populations 1.21890 0.93357 1.02189 1.02598 1.20173 0.96794 0.99193 0.90322 0.89068 1.21186 1.00075 0.98337 0.92020 1.21548 1.03071 1.00152 0.91108 1.21200 0.83951 0.86922 0.85756 1.90478 1.47151 1.27772 1.87424 1.42012 1.49821 1.24246 1.04877 1.19695 1.34168 1.07735 0.85240 0.90518 1.26050 0.96744 0.96895 1.01514 1.69667 1.40160 1.19959 1.26245 0.84933 0.78326 0.78208 0.76900 1.19568 1.19339 1.19836 1.20038 0.97711 0.94517 0.96182 1.21200 1.00933 0.94792 0.98054 1.21415 0.98258 1.00688 0.94460 1.21450 0.98562 0.95163 1.00082 1.21456 0.99973 0.95235 0.97724 1.21355 0.97974 1.00819 0.94705 0.92963 0.91349 0.91552 0.93103 0.93741 0.88148 0.87857 0.76854 0.91220 0.86553 0.84763 0.84066 0.83953 0.84743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.76 71.98 0.63 -2.39 16 2 C -0.05 -1.11 2.56 -11.54 -0.03 -1.14 16 3 H 0.09 1.93 7.88 -2.39 -0.02 1.91 16 4 C -0.08 -2.51 3.71 30.59 0.11 -2.40 16 5 C -0.12 -4.07 5.46 29.85 0.16 -3.91 16 6 C 0.43 21.22 7.78 87.66 0.68 21.91 16 7 O -0.64 -36.76 15.56 -3.08 -0.05 -36.81 16 8 N -0.57 -30.18 5.29 -306.98 -1.62 -31.80 16 9 C -0.34 -19.71 9.68 84.04 0.81 -18.90 16 10 H 0.08 4.77 7.16 -2.91 -0.02 4.74 16 11 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 12 N -0.92 -50.15 13.05 21.66 0.28 -49.87 16 13 Si 0.99 43.45 29.55 68.60 2.03 45.48 16 14 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 15 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 17 C -0.08 -2.06 4.78 -19.87 -0.09 -2.15 16 18 C -0.13 -3.26 8.76 22.27 0.20 -3.06 16 19 C -0.13 -2.78 10.05 22.27 0.22 -2.56 16 20 C -0.13 -2.55 10.05 22.27 0.22 -2.32 16 21 C -0.13 -2.39 10.05 22.27 0.22 -2.16 16 22 C -0.13 -2.80 9.67 22.27 0.22 -2.59 16 23 H 0.05 1.14 7.41 -2.39 -0.02 1.13 16 24 H 0.07 1.37 6.56 -2.39 -0.02 1.36 16 25 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.05 1.79 7.51 -2.38 -0.02 1.78 16 27 H 0.04 1.61 8.10 -2.39 -0.02 1.59 16 28 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.10 3.06 6.56 -2.39 -0.02 3.05 16 30 H 0.40 19.73 7.90 -92.71 -0.73 19.00 16 31 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 32 H 0.12 2.90 7.16 -2.91 -0.02 2.88 16 33 H 0.13 2.32 8.06 -2.91 -0.02 2.29 16 34 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 36 H 0.13 2.38 7.95 -2.91 -0.02 2.36 16 Total: -1.00 -68.74 304.53 4.81 -63.93 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: 0.34 Total: 30.95 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: 3.83 Total: -21.88 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -1.34 Total: -81.67 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: -0.05 Total: -36.81 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -68.74 4.81 -63.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158459945.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.453 kcal (2) G-P(sol) polarization free energy of solvation -68.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds