Wall clock time and date at job start Sun Mar 29 2020 23:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35938 * 116.99946 * 2 1 4 4 C 1.38827 * 119.97030 * 0.02562 * 3 2 1 5 5 C 1.38045 * 120.19575 * 179.30639 * 4 3 2 6 6 C 1.39149 * 119.70640 * 0.11290 * 5 4 3 7 7 C 1.38539 * 119.89953 * 1.15936 * 6 5 4 8 8 C 1.37835 * 120.47190 * 358.11390 * 7 6 5 9 9 C 1.51778 * 119.50519 * 176.25845 * 7 6 5 10 10 C 1.52572 * 109.14447 * 69.04812 * 9 7 6 11 11 C 1.52265 * 111.14348 * 274.85502 * 10 9 7 12 12 C 1.51046 * 113.60278 * 69.43598 * 11 10 9 13 13 N 1.39478 * 120.22799 * 181.51256 * 6 5 4 14 14 C 1.36835 * 121.01775 * 292.13618 * 13 6 5 15 15 H 1.07996 * 120.00004 * 180.02562 * 14 13 6 16 16 C 1.38763 * 119.99925 * 0.02562 * 14 13 6 17 17 N 1.31616 * 119.99989 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 119.99934 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47510 * 59.99832 * 18 16 14 20 20 H 1.48503 * 109.47148 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47149 * 299.99978 * 18 16 14 22 22 H 1.09001 * 109.47268 * 60.00311 * 1 2 3 23 23 H 1.09001 * 109.46766 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47466 * 300.00115 * 1 2 3 25 25 H 1.07993 * 119.90312 * 359.32993 * 4 3 2 26 26 H 1.07995 * 120.14510 * 180.08148 * 5 4 3 27 27 H 1.08001 * 120.17829 * 181.30266 * 8 7 6 28 28 H 1.08997 * 109.52630 * 188.94766 * 9 7 6 29 29 H 1.08998 * 109.52520 * 309.08379 * 9 7 6 30 30 H 1.09007 * 109.13960 * 154.43452 * 10 9 7 31 31 H 1.08995 * 109.14661 * 35.28952 * 10 9 7 32 32 H 1.09002 * 108.65785 * 308.36733 * 11 10 9 33 33 H 1.08999 * 108.65372 * 190.50188 * 11 10 9 34 34 H 1.09000 * 109.29742 * 55.93823 * 12 11 10 35 35 H 1.09001 * 109.29757 * 175.31534 * 12 11 10 36 36 H 0.96998 * 120.00620 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2894 2.3751 0.0005 5 6 1.9112 3.6075 0.0150 6 6 3.3008 3.6787 0.0266 7 6 4.0521 2.5150 -0.0006 8 6 3.4334 1.2833 -0.0002 9 6 5.5656 2.6039 -0.0738 10 6 6.0986 3.1579 1.2441 11 6 6.0761 4.6804 1.2490 12 6 4.6840 5.2645 1.2942 13 7 3.9401 4.9174 0.0731 14 6 3.8778 5.7832 -0.9847 15 1 4.3794 6.7381 -0.9313 16 6 3.1702 5.4341 -2.1262 17 7 2.5585 4.2706 -2.1911 18 14 3.0845 6.6163 -3.5699 19 1 4.4565 6.8896 -4.0680 20 1 2.2739 6.0116 -4.6574 21 1 2.4545 7.8877 -3.1320 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.2111 2.3162 -0.0100 26 1 1.3217 4.5124 0.0167 27 1 4.0240 0.3791 -0.0002 28 1 5.9809 1.6111 -0.2462 29 1 5.8525 3.2658 -0.8909 30 1 7.1234 2.8151 1.3874 31 1 5.4812 2.7886 2.0629 32 1 6.5760 5.0394 0.3494 33 1 6.6312 5.0344 2.1177 34 1 4.1558 4.8701 2.1622 35 1 4.7510 6.3492 1.3792 36 1 2.0641 4.0264 -2.9891 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270947344.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:43 Heat of formation + Delta-G solvation = 10.153982 kcal Electronic energy + Delta-G solvation = -18751.983481 eV Core-core repulsion = 16009.025260 eV Total energy + Delta-G solvation = -2742.958221 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.21916 -37.81078 -34.82302 -34.02974 -31.21869 -30.05582 -28.98043 -26.55173 -26.28895 -23.99143 -22.99468 -21.25239 -19.71076 -19.36673 -17.36019 -16.66292 -15.72181 -14.93423 -14.85444 -14.32995 -14.08745 -13.83570 -13.24390 -12.89397 -12.53058 -12.40860 -12.06584 -11.89187 -11.51515 -11.36468 -11.19638 -10.96200 -10.89342 -10.50073 -10.26099 -10.02748 -9.90090 -9.86231 -9.65335 -9.50489 -9.04428 -7.62001 -7.24919 -6.67115 -5.39829 -3.35313 2.79001 2.96430 3.31970 3.36471 3.38277 4.19364 4.35794 5.14755 5.25555 5.33033 5.53280 5.59791 5.66248 5.67818 5.82728 5.87665 6.06722 6.14274 6.23750 6.34518 6.36884 6.45890 6.62344 6.69765 6.72343 6.81317 6.90583 7.03789 7.14773 7.36823 7.46447 7.57077 7.73040 7.98092 8.11928 8.30965 8.56528 9.18003 9.70717 10.10594 11.13813 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.017890 B = 0.010938 C = 0.007671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.776913 B = 2559.178458 C = 3649.468514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.334 6.334 3 C 0.071 3.929 4 C -0.213 4.213 5 C -0.012 4.012 6 C 0.235 3.765 7 C -0.092 4.092 8 C -0.155 4.155 9 C -0.060 4.060 10 C -0.106 4.106 11 C -0.139 4.139 12 C 0.144 3.856 13 N -0.544 5.544 14 C -0.245 4.245 15 H 0.083 0.917 16 C -0.012 4.012 17 N -0.877 5.877 18 Si 0.914 3.086 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.284 1.284 22 H 0.046 0.954 23 H 0.083 0.917 24 H 0.044 0.956 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.042 0.958 35 H 0.057 0.943 36 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.555 -3.105 5.725 6.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.249 6.249 3 C 0.027 3.973 4 C -0.233 4.233 5 C -0.037 4.037 6 C 0.136 3.864 7 C -0.096 4.096 8 C -0.175 4.175 9 C -0.097 4.097 10 C -0.143 4.143 11 C -0.178 4.178 12 C 0.019 3.981 13 N -0.255 5.255 14 C -0.373 4.373 15 H 0.101 0.899 16 C -0.210 4.210 17 N -0.519 5.519 18 Si 0.744 3.256 19 H -0.210 1.210 20 H -0.215 1.215 21 H -0.211 1.211 22 H 0.065 0.935 23 H 0.101 0.899 24 H 0.063 0.937 25 H 0.116 0.884 26 H 0.117 0.883 27 H 0.120 0.880 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.599 -3.192 5.512 6.398 hybrid contribution -0.442 0.730 -1.207 1.479 sum 0.156 -2.462 4.305 4.962 Atomic orbital electron populations 1.22753 0.80474 1.01906 1.00705 1.85917 1.19697 1.28701 1.90562 1.18616 0.91891 0.82907 1.03860 1.20604 0.97629 0.92645 1.12400 1.20620 0.94372 0.94775 0.93910 1.16490 0.89717 0.84513 0.95718 1.19573 0.94467 0.92120 1.03409 1.19579 0.90662 0.96421 1.10843 1.20428 0.92223 0.99611 0.97438 1.21204 0.99330 0.95704 0.98083 1.21637 0.99466 0.95832 1.00881 1.20704 0.90855 0.98128 0.88427 1.41843 1.54620 1.15026 1.13990 1.19377 1.27939 0.98272 0.91707 0.89910 1.24918 1.00119 0.97344 0.98619 1.69959 1.34956 1.19591 1.27351 0.86166 0.77664 0.79837 0.81978 1.20990 1.21487 1.21062 0.93499 0.89881 0.93701 0.88369 0.88277 0.87972 0.93200 0.90989 0.93237 0.92673 0.92184 0.93424 0.93954 0.92475 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 9.81 101.05 0.99 1.56 16 2 O -0.33 -6.67 10.50 -19.54 -0.21 -6.87 16 3 C 0.07 1.59 6.69 -39.11 -0.26 1.33 16 4 C -0.21 -4.75 9.03 -39.43 -0.36 -5.11 16 5 C -0.01 -0.29 7.07 -39.31 -0.28 -0.57 16 6 C 0.23 5.73 3.48 -83.93 -0.29 5.44 16 7 C -0.09 -2.12 5.09 -104.13 -0.53 -2.65 16 8 C -0.16 -3.48 9.62 -39.48 -0.38 -3.86 16 9 C -0.06 -1.21 5.49 -27.57 -0.15 -1.36 16 10 C -0.11 -1.83 5.62 -27.33 -0.15 -1.99 16 11 C -0.14 -2.42 5.51 -28.09 -0.15 -2.57 16 12 C 0.14 2.84 5.91 -4.68 -0.03 2.81 16 13 N -0.54 -13.06 2.34 -113.84 -0.27 -13.33 16 14 C -0.25 -6.34 9.82 -15.12 -0.15 -6.49 16 15 H 0.08 2.05 7.82 -52.49 -0.41 1.64 16 16 C -0.01 -0.32 5.38 -17.45 -0.09 -0.41 16 17 N -0.88 -24.29 8.78 55.49 0.49 -23.80 16 18 Si 0.91 21.22 29.55 -169.99 -5.02 16.20 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H 0.05 0.71 7.65 -51.93 -0.40 0.32 16 23 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.04 0.63 7.66 -51.93 -0.40 0.24 16 25 H 0.10 1.97 6.28 -52.49 -0.33 1.64 16 26 H 0.10 2.51 8.06 -52.49 -0.42 2.09 16 27 H 0.10 2.11 7.98 -52.49 -0.42 1.69 16 28 H 0.05 0.92 7.92 -51.93 -0.41 0.50 16 29 H 0.07 1.63 7.83 -51.93 -0.41 1.22 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.96 7.88 -51.93 -0.41 0.55 16 32 H 0.06 1.12 7.97 -51.93 -0.41 0.71 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.04 0.80 8.05 -51.93 -0.42 0.38 16 35 H 0.06 1.06 8.02 -51.93 -0.42 0.64 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 286.89 15.07 4.32 4.32 Total: -1.00 -28.74 286.89 -7.78 -36.51 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.26 Total: 0.84 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -1.84 Total: -13.88 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.22 Total: -37.13 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.21 Total: -6.87 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.74 -7.78 -36.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270947344.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.666 kcal (2) G-P(sol) polarization free energy of solvation -28.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds