Wall clock time and date at job start Sun Mar 29 2020 23:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35938 * 116.99946 * 2 1 4 4 C 1.38827 * 119.97030 * 0.02562 * 3 2 1 5 5 C 1.38045 * 120.19575 * 179.30639 * 4 3 2 6 6 C 1.39149 * 119.70640 * 0.11290 * 5 4 3 7 7 C 1.38539 * 119.89953 * 1.15936 * 6 5 4 8 8 C 1.37835 * 120.47190 * 358.11390 * 7 6 5 9 9 C 1.51778 * 119.50519 * 176.25845 * 7 6 5 10 10 C 1.52572 * 109.14447 * 69.04812 * 9 7 6 11 11 C 1.52265 * 111.14348 * 274.85502 * 10 9 7 12 12 C 1.51046 * 113.60278 * 69.43598 * 11 10 9 13 13 N 1.39478 * 120.22799 * 181.51256 * 6 5 4 14 14 C 1.36835 * 121.01775 * 292.13618 * 13 6 5 15 15 H 1.07996 * 120.00004 * 180.02562 * 14 13 6 16 16 C 1.38763 * 119.99925 * 0.02562 * 14 13 6 17 17 N 1.31616 * 119.99989 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 119.99934 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47510 * 59.99832 * 18 16 14 20 20 H 1.48503 * 109.47148 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47149 * 299.99978 * 18 16 14 22 22 H 1.09001 * 109.47268 * 60.00311 * 1 2 3 23 23 H 1.09001 * 109.46766 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47466 * 300.00115 * 1 2 3 25 25 H 1.07993 * 119.90312 * 359.32993 * 4 3 2 26 26 H 1.07995 * 120.14510 * 180.08148 * 5 4 3 27 27 H 1.08001 * 120.17829 * 181.30266 * 8 7 6 28 28 H 1.08997 * 109.52630 * 188.94766 * 9 7 6 29 29 H 1.08998 * 109.52520 * 309.08379 * 9 7 6 30 30 H 1.09007 * 109.13960 * 154.43452 * 10 9 7 31 31 H 1.08995 * 109.14661 * 35.28952 * 10 9 7 32 32 H 1.09002 * 108.65785 * 308.36733 * 11 10 9 33 33 H 1.08999 * 108.65372 * 190.50188 * 11 10 9 34 34 H 1.09000 * 109.29742 * 55.93823 * 12 11 10 35 35 H 1.09001 * 109.29757 * 175.31534 * 12 11 10 36 36 H 0.96998 * 120.00620 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2894 2.3751 0.0005 5 6 1.9112 3.6075 0.0150 6 6 3.3008 3.6787 0.0266 7 6 4.0521 2.5150 -0.0006 8 6 3.4334 1.2833 -0.0002 9 6 5.5656 2.6039 -0.0738 10 6 6.0986 3.1579 1.2441 11 6 6.0761 4.6804 1.2490 12 6 4.6840 5.2645 1.2942 13 7 3.9401 4.9174 0.0731 14 6 3.8778 5.7832 -0.9847 15 1 4.3794 6.7381 -0.9313 16 6 3.1702 5.4341 -2.1262 17 7 2.5585 4.2706 -2.1911 18 14 3.0845 6.6163 -3.5699 19 1 4.4565 6.8896 -4.0680 20 1 2.2739 6.0116 -4.6574 21 1 2.4545 7.8877 -3.1320 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.2111 2.3162 -0.0100 26 1 1.3217 4.5124 0.0167 27 1 4.0240 0.3791 -0.0002 28 1 5.9809 1.6111 -0.2462 29 1 5.8525 3.2658 -0.8909 30 1 7.1234 2.8151 1.3874 31 1 5.4812 2.7886 2.0629 32 1 6.5760 5.0394 0.3494 33 1 6.6312 5.0344 2.1177 34 1 4.1558 4.8701 2.1622 35 1 4.7510 6.3492 1.3792 36 1 2.0641 4.0264 -2.9891 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270947344.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:43 Heat of formation + Delta-G solvation = -4.687333 kcal Electronic energy + Delta-G solvation = -18752.627049 eV Core-core repulsion = 16009.025260 eV Total energy + Delta-G solvation = -2743.601789 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.89925 -39.40097 -36.45148 -35.74110 -33.06299 -31.74607 -30.60884 -28.20867 -27.80613 -25.72854 -24.64725 -22.99633 -21.33560 -20.97523 -19.20732 -18.27471 -17.39532 -16.60061 -16.32629 -16.20333 -15.64790 -15.47586 -14.90702 -14.47384 -14.19339 -13.99303 -13.68548 -13.42917 -13.23095 -13.05309 -12.88296 -12.69853 -12.47438 -12.21559 -11.93556 -11.71256 -11.56104 -11.38844 -11.25559 -11.11009 -10.93848 -9.42007 -9.04362 -8.52101 -7.31839 -5.33124 1.01193 1.19019 1.45913 1.47727 1.53126 2.46699 2.73369 3.32631 3.38951 3.55961 4.05832 4.19949 4.35800 4.36617 4.41732 4.48255 4.54049 4.62663 4.74244 4.76786 4.87131 4.96127 5.04497 5.17523 5.25404 5.32443 5.34369 5.41180 5.49238 5.57570 5.63043 5.81046 5.95057 6.14038 6.31790 6.49266 6.88204 7.20769 7.88698 8.19739 9.13089 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.017890 B = 0.010938 C = 0.007671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.776913 B = 2559.178458 C = 3649.468514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.343 6.343 3 C 0.073 3.927 4 C -0.216 4.216 5 C -0.028 4.028 6 C 0.216 3.784 7 C -0.100 4.100 8 C -0.167 4.167 9 C -0.057 4.057 10 C -0.100 4.100 11 C -0.132 4.132 12 C 0.137 3.863 13 N -0.558 5.558 14 C -0.250 4.250 15 H 0.089 0.911 16 C -0.062 4.062 17 N -0.900 5.900 18 Si 0.971 3.029 19 H -0.280 1.280 20 H -0.300 1.300 21 H -0.278 1.278 22 H 0.043 0.957 23 H 0.120 0.880 24 H 0.055 0.945 25 H 0.116 0.884 26 H 0.077 0.923 27 H 0.119 0.881 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.285 -3.767 6.623 7.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.258 6.258 3 C 0.028 3.972 4 C -0.237 4.237 5 C -0.053 4.053 6 C 0.117 3.883 7 C -0.104 4.104 8 C -0.187 4.187 9 C -0.094 4.094 10 C -0.137 4.137 11 C -0.171 4.171 12 C 0.013 3.987 13 N -0.270 5.270 14 C -0.378 4.378 15 H 0.106 0.894 16 C -0.257 4.257 17 N -0.543 5.543 18 Si 0.800 3.200 19 H -0.207 1.207 20 H -0.226 1.226 21 H -0.204 1.204 22 H 0.062 0.938 23 H 0.138 0.862 24 H 0.074 0.926 25 H 0.134 0.866 26 H 0.095 0.905 27 H 0.137 0.863 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.340 -3.851 6.448 7.629 hybrid contribution -0.736 0.869 -1.420 1.820 sum 0.603 -2.982 5.028 5.877 Atomic orbital electron populations 1.23098 0.77914 1.04572 1.01064 1.85906 1.22311 1.27381 1.90225 1.18741 0.92168 0.83617 1.02682 1.20760 0.98692 0.92187 1.12014 1.20592 0.94680 0.94696 0.95341 1.16712 0.89899 0.85294 0.96365 1.19897 0.96018 0.91868 1.02589 1.19887 0.91243 0.96922 1.10664 1.20441 0.90670 1.00157 0.98179 1.21180 1.00969 0.95447 0.96148 1.21538 0.97890 0.95921 1.01778 1.20924 0.91938 0.98913 0.86943 1.42047 1.55507 1.14815 1.14667 1.19683 1.27138 0.98722 0.92300 0.89352 1.25567 1.00571 0.98755 1.00810 1.70221 1.36076 1.21061 1.26961 0.85260 0.77331 0.78254 0.79135 1.20654 1.22640 1.20446 0.93788 0.86160 0.92631 0.86595 0.90516 0.86268 0.91426 0.93912 0.90075 0.92528 0.93668 0.89776 0.93466 0.91713 0.94468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.81 113.37 1.11 1.91 16 2 O -0.34 -13.11 10.50 -92.85 -0.97 -14.08 16 3 C 0.07 3.17 6.69 22.57 0.15 3.32 16 4 C -0.22 -9.70 9.03 22.37 0.20 -9.50 16 5 C -0.03 -1.42 7.07 22.44 0.16 -1.26 16 6 C 0.22 10.66 3.48 38.22 0.13 10.79 16 7 C -0.10 -4.58 5.09 -19.54 -0.10 -4.68 16 8 C -0.17 -7.37 9.62 22.34 0.21 -7.15 16 9 C -0.06 -2.25 5.49 30.05 0.16 -2.09 16 10 C -0.10 -3.22 5.62 30.21 0.17 -3.05 16 11 C -0.13 -4.31 5.51 29.71 0.16 -4.15 16 12 C 0.14 5.25 5.91 85.62 0.51 5.76 16 13 N -0.56 -26.99 2.34 -514.09 -1.20 -28.19 16 14 C -0.25 -13.05 9.82 84.04 0.83 -12.23 16 15 H 0.09 4.38 7.82 -2.91 -0.02 4.35 16 16 C -0.06 -3.34 5.38 84.85 0.46 -2.88 16 17 N -0.90 -51.11 8.78 21.64 0.19 -50.92 16 18 Si 0.97 44.38 29.55 68.60 2.03 46.41 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 22 H 0.04 1.27 7.65 -2.39 -0.02 1.25 16 23 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 24 H 0.06 1.45 7.66 -2.39 -0.02 1.43 16 25 H 0.12 4.61 6.28 -2.91 -0.02 4.59 16 26 H 0.08 4.06 8.06 -2.91 -0.02 4.04 16 27 H 0.12 4.72 7.98 -2.91 -0.02 4.70 16 28 H 0.07 2.36 7.92 -2.39 -0.02 2.34 16 29 H 0.04 1.93 7.83 -2.39 -0.02 1.91 16 30 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.06 1.82 7.88 -2.39 -0.02 1.80 16 32 H 0.04 1.61 7.97 -2.39 -0.02 1.59 16 33 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.05 1.74 8.05 -2.39 -0.02 1.72 16 35 H 0.06 2.33 8.02 -2.39 -0.02 2.31 16 36 H 0.24 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -62.10 286.89 5.25 -56.85 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 1.05 Total: 15.14 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: 4.16 Total: -25.20 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -1.01 Total: -79.12 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.97 Total: -14.08 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -62.10 5.25 -56.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270947344.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.165 kcal (2) G-P(sol) polarization free energy of solvation -62.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds