Wall clock time and date at job start Sun Mar 29 2020 23:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 108.60844 * 2 1 4 4 C 1.51365 * 108.65543 * 118.02248 * 2 1 3 5 5 O 1.43335 * 110.68675 * 186.06079 * 4 2 1 6 6 C 1.36013 * 115.30991 * 274.65827 * 5 4 2 7 7 C 1.38842 * 120.11759 * 249.31490 * 6 5 4 8 8 C 1.38175 * 119.71001 * 178.94286 * 7 6 5 9 9 C 1.38290 * 120.26520 * 359.92611 * 8 7 6 10 10 C 1.38418 * 120.05565 * 0.46883 * 9 8 7 11 11 C 1.37912 * 119.63894 * 0.03826 * 10 9 8 12 12 C 1.51711 * 120.22684 * 178.36634 * 11 10 9 13 13 N 1.46019 * 108.65584 * 242.10768 * 2 1 3 14 14 C 1.46905 * 110.99523 * 295.12520 * 13 2 1 15 15 C 1.50699 * 109.46950 * 169.99989 * 14 13 2 16 16 H 1.07997 * 119.99984 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00005 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99890 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00050 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47229 * 60.00186 * 19 17 15 21 21 H 1.48508 * 109.47206 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47292 * 299.99974 * 19 17 15 23 23 H 1.09002 * 109.47153 * 301.97522 * 1 2 3 24 24 H 1.09001 * 109.46832 * 181.97713 * 1 2 3 25 25 H 1.09004 * 109.47261 * 61.97694 * 1 2 3 26 26 H 1.08995 * 109.23094 * 306.37603 * 4 2 1 27 27 H 1.09005 * 109.23162 * 65.79357 * 4 2 1 28 28 H 1.08000 * 120.14518 * 358.92122 * 7 6 5 29 29 H 1.07995 * 119.86440 * 179.90468 * 8 7 6 30 30 H 1.07996 * 119.97000 * 180.44881 * 9 8 7 31 31 H 1.07999 * 120.17703 * 180.02562 * 10 9 8 32 32 H 1.09004 * 109.58980 * 232.56258 * 12 11 10 33 33 H 1.09002 * 109.59082 * 352.85041 * 12 11 10 34 34 H 1.09000 * 109.46337 * 289.99652 * 14 13 2 35 35 H 1.08993 * 109.47414 * 49.99257 * 14 13 2 36 36 H 0.96998 * 119.99965 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8778 1.0330 0.0000 4 6 2.0142 -0.6738 1.2660 5 8 3.4395 -0.5738 1.3795 6 6 4.1437 -1.5394 0.7301 7 6 4.8387 -2.4999 1.4528 8 6 5.5333 -3.4899 0.7846 9 6 5.5367 -3.5273 -0.5978 10 6 4.8508 -2.5654 -1.3190 11 6 4.1664 -1.5715 -0.6514 12 6 3.4409 -0.4893 -1.4286 13 7 1.9971 -0.6472 -1.2227 14 6 1.6137 -2.0651 -1.2472 15 6 1.8905 -2.6368 -2.6138 16 1 2.3089 -2.0094 -3.3869 17 6 1.6096 -3.9607 -2.8772 18 7 1.0996 -4.7245 -1.9358 19 14 1.9521 -4.6691 -4.5713 20 1 3.3994 -4.5417 -4.8778 21 1 1.5646 -6.1025 -4.5961 22 1 1.1638 -3.9262 -5.5871 23 1 -0.3633 0.5442 0.8718 24 1 -0.3633 -1.0271 0.0355 25 1 -0.3634 0.4828 -0.9072 26 1 1.5507 -0.1939 2.1279 27 1 1.7292 -1.7257 1.2444 28 1 4.8367 -2.4730 2.5325 29 1 6.0760 -4.2373 1.3442 30 1 6.0753 -4.3075 -1.1150 31 1 4.8518 -2.5930 -2.3986 32 1 3.7558 0.4911 -1.0709 33 1 3.6731 -0.5831 -2.4894 34 1 2.1917 -2.6106 -0.5013 35 1 0.5512 -2.1582 -1.0228 36 1 0.9023 -5.6560 -2.1209 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272882062.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:11 Heat of formation + Delta-G solvation = -19.255821 kcal Electronic energy + Delta-G solvation = -19003.051364 eV Core-core repulsion = 16258.817838 eV Total energy + Delta-G solvation = -2744.233526 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.81172 -38.67209 -37.77391 -34.74881 -33.73795 -31.53521 -30.45115 -29.05361 -27.26933 -26.23081 -24.41290 -23.49689 -21.98454 -20.58213 -18.95800 -18.32654 -17.22491 -16.80495 -16.67779 -16.44725 -16.17389 -15.50403 -15.13972 -14.77495 -14.43438 -14.05447 -13.82849 -13.39517 -13.19312 -12.98970 -12.82764 -12.78342 -12.67204 -12.40495 -12.23986 -12.13729 -11.92937 -11.38605 -11.24926 -10.96776 -10.52416 -9.67723 -9.36247 -8.96798 -8.13353 -6.19583 0.33409 0.51904 1.40879 1.42604 1.49688 2.42089 2.49855 3.05316 3.20866 3.37191 3.85775 3.93878 4.03637 4.12042 4.21027 4.26210 4.39520 4.54140 4.60232 4.62751 4.73410 4.74553 4.89291 4.98011 5.08689 5.14907 5.29428 5.35886 5.40152 5.44624 5.60589 5.68987 5.73995 5.87429 6.14078 6.33275 6.53036 6.71090 6.93304 7.47681 8.97491 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.018897 B = 0.011269 C = 0.008248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.336062 B = 2484.142365 C = 3394.037468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.048 3.952 3 H 0.091 0.909 4 C 0.037 3.963 5 O -0.334 6.334 6 C 0.070 3.930 7 C -0.148 4.148 8 C -0.111 4.111 9 C -0.139 4.139 10 C -0.084 4.084 11 C -0.132 4.132 12 C 0.111 3.889 13 N -0.535 5.535 14 C 0.209 3.791 15 C -0.505 4.505 16 H 0.056 0.944 17 C 0.012 3.988 18 N -0.931 5.931 19 Si 0.951 3.049 20 H -0.265 1.265 21 H -0.288 1.288 22 H -0.273 1.273 23 H 0.087 0.913 24 H 0.035 0.965 25 H 0.062 0.938 26 H 0.128 0.872 27 H 0.033 0.967 28 H 0.141 0.859 29 H 0.153 0.847 30 H 0.139 0.861 31 H 0.118 0.882 32 H 0.080 0.920 33 H 0.074 0.926 34 H -0.022 1.022 35 H 0.005 0.995 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.707 5.866 5.633 9.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.062 4.062 3 H 0.109 0.891 4 C -0.040 4.040 5 O -0.251 6.251 6 C 0.026 3.974 7 C -0.167 4.167 8 C -0.129 4.129 9 C -0.157 4.157 10 C -0.103 4.103 11 C -0.135 4.135 12 C -0.017 4.017 13 N -0.257 5.257 14 C 0.083 3.917 15 C -0.543 4.543 16 H 0.075 0.925 17 C -0.186 4.186 18 N -0.572 5.572 19 Si 0.776 3.224 20 H -0.190 1.190 21 H -0.214 1.214 22 H -0.198 1.198 23 H 0.106 0.894 24 H 0.055 0.945 25 H 0.081 0.919 26 H 0.146 0.854 27 H 0.052 0.948 28 H 0.159 0.841 29 H 0.171 0.829 30 H 0.157 0.843 31 H 0.136 0.864 32 H 0.098 0.902 33 H 0.093 0.907 34 H -0.004 1.004 35 H 0.023 0.977 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.450 6.109 5.374 9.793 hybrid contribution 0.106 -1.333 -0.400 1.395 sum 5.556 4.776 4.974 8.856 Atomic orbital electron populations 1.21759 0.92918 1.01428 1.02986 1.21917 0.97301 0.99033 0.87920 0.89052 1.23338 0.78900 1.00777 1.00943 1.86220 1.18600 1.48331 1.71976 1.18761 0.97164 0.91244 0.90239 1.21379 1.00651 0.93843 1.00790 1.21259 0.99218 0.98166 0.94267 1.21462 1.00299 0.99030 0.94866 1.20995 0.95498 0.93830 0.99998 1.21027 0.99244 0.99382 0.93811 1.21189 0.86205 0.95269 0.99024 1.61896 1.12832 1.17112 1.33881 1.19429 0.93962 0.82496 0.95776 1.21252 1.40847 0.94754 0.97444 0.92546 1.25653 0.95301 0.97439 1.00184 1.70068 1.45377 1.07030 1.34709 0.85717 0.79112 0.77019 0.80520 1.19014 1.21387 1.19814 0.89383 0.94543 0.91883 0.85387 0.94839 0.84139 0.82888 0.84321 0.86397 0.90223 0.90729 1.00399 0.97676 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 8.88 71.98 0.64 -3.59 16 2 C 0.05 1.67 2.48 44.55 0.11 1.78 16 3 H 0.09 2.88 7.89 -2.39 -0.02 2.86 16 4 C 0.04 1.26 5.48 71.45 0.39 1.65 16 5 O -0.33 -12.35 10.04 -93.70 -0.94 -13.29 16 6 C 0.07 2.72 5.11 22.41 0.11 2.84 16 7 C -0.15 -5.11 10.01 22.40 0.22 -4.89 16 8 C -0.11 -3.54 10.03 22.27 0.22 -3.31 16 9 C -0.14 -4.83 10.05 22.33 0.22 -4.61 16 10 C -0.08 -3.37 8.95 22.24 0.20 -3.17 16 11 C -0.13 -5.41 3.21 -19.63 -0.06 -5.47 16 12 C 0.11 4.43 5.21 85.92 0.45 4.87 16 13 N -0.54 -22.87 4.56 -884.01 -4.03 -26.90 16 14 C 0.21 10.74 3.41 85.56 0.29 11.03 16 15 C -0.50 -27.56 7.84 25.60 0.20 -27.36 16 16 H 0.06 3.05 7.10 -2.91 -0.02 3.03 16 17 C 0.01 0.68 5.46 84.65 0.46 1.14 16 18 N -0.93 -55.12 13.29 21.45 0.28 -54.84 16 19 Si 0.95 43.64 29.54 68.60 2.03 45.67 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 21 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 23 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.04 1.34 6.42 -2.39 -0.02 1.32 16 25 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 26 H 0.13 3.40 8.12 -2.39 -0.02 3.38 16 27 H 0.03 1.36 6.45 -2.38 -0.02 1.34 16 28 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 29 H 0.15 3.69 8.06 -2.91 -0.02 3.66 16 30 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 31 H 0.12 4.76 7.99 -2.91 -0.02 4.73 16 32 H 0.08 2.86 7.75 -2.38 -0.02 2.84 16 33 H 0.07 3.03 7.22 -2.39 -0.02 3.01 16 34 H -0.02 -1.21 5.03 -2.39 -0.01 -1.22 16 35 H 0.01 0.30 6.02 -2.39 -0.01 0.28 16 36 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -63.79 283.61 1.87 -61.92 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 1.07 Total: 16.54 kcal Atomic # 6 Polarization: -32.56 SS G_CDS: 3.47 Total: -29.10 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -3.75 Total: -81.74 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.94 Total: -13.29 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -63.79 1.87 -61.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272882062.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.667 kcal (2) G-P(sol) polarization free energy of solvation -63.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds