Wall clock time and date at job start Sun Mar 29 2020 23:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35894 * 117.00525 * 2 1 4 4 C 1.38581 * 119.88173 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.76427 * 180.02562 * 4 3 2 6 6 C 1.38086 * 119.93368 * 0.07331 * 5 4 3 7 7 C 1.38731 * 120.49395 * 359.97438 * 6 5 4 8 8 C 1.37788 * 119.75751 * 359.88215 * 7 6 5 9 9 C 1.50707 * 121.68381 * 180.48523 * 8 7 6 10 10 C 1.52899 * 109.95774 * 343.04148 * 9 8 7 11 11 N 1.47156 * 108.50185 * 50.38949 * 10 9 8 12 12 C 1.46903 * 111.00256 * 165.33568 * 11 10 9 13 13 C 1.50699 * 109.46994 * 189.04546 * 12 11 10 14 14 H 1.08002 * 120.00516 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99783 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99707 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99956 * 180.27458 * 15 13 12 18 18 H 1.48497 * 109.47172 * 179.72730 * 17 15 13 19 19 H 1.48506 * 109.47132 * 299.72429 * 17 15 13 20 20 H 1.48501 * 109.47173 * 59.72550 * 17 15 13 21 21 C 1.46636 * 110.25867 * 288.76468 * 11 10 9 22 22 H 1.08999 * 109.46824 * 300.00112 * 1 2 3 23 23 H 1.09003 * 109.46862 * 59.99861 * 1 2 3 24 24 H 1.09001 * 109.47256 * 180.02562 * 1 2 3 25 25 H 1.08005 * 120.11848 * 359.97438 * 4 3 2 26 26 H 1.08007 * 120.03394 * 180.02562 * 5 4 3 27 27 H 1.07996 * 119.75260 * 179.97438 * 6 5 4 28 28 H 1.08997 * 109.39473 * 103.19275 * 9 8 7 29 29 H 1.09000 * 109.38980 * 223.00258 * 9 8 7 30 30 H 1.09003 * 109.63400 * 290.68565 * 10 9 8 31 31 H 1.09001 * 109.63147 * 170.09660 * 10 9 8 32 32 H 1.09001 * 109.46349 * 69.04802 * 12 11 10 33 33 H 1.08997 * 109.46851 * 309.04785 * 12 11 10 34 34 H 0.97005 * 119.99656 * 179.97438 * 16 15 13 35 35 H 1.09003 * 109.26936 * 172.79645 * 21 11 10 36 36 H 1.09003 * 109.26617 * 292.27290 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2890 2.3715 0.0005 5 6 1.9187 3.6008 0.0000 6 6 3.2979 3.6686 -0.0026 7 6 4.0597 2.5091 -0.0042 8 6 3.4355 1.2807 -0.0006 9 6 4.2202 -0.0059 0.0087 10 6 5.6672 0.2623 -0.4061 11 7 6.1857 1.3773 0.4023 12 6 7.6494 1.4599 0.3080 13 6 8.1617 2.4603 1.3118 14 1 7.4693 2.9829 1.9553 15 6 9.5145 2.7094 1.4081 16 7 10.3575 2.0742 0.6236 17 14 10.1503 3.9437 2.6577 18 1 11.6302 4.0238 2.5656 19 1 9.5639 5.2789 2.3771 20 1 9.7621 3.5098 4.0238 21 6 5.5605 2.6377 -0.0109 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.2105 2.3151 0.0005 26 1 1.3330 4.5083 0.0008 27 1 3.7872 4.6313 -0.0034 28 1 4.2044 -0.4322 1.0117 29 1 3.7694 -0.7098 -0.6909 30 1 5.7020 0.5287 -1.4625 31 1 6.2698 -0.6288 -0.2302 32 1 7.9313 1.7760 -0.6964 33 1 8.0826 0.4817 0.5162 34 1 11.3091 2.2497 0.6911 35 1 5.8569 3.4290 0.6778 36 1 5.8952 2.8926 -1.0164 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273022962.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:20 Heat of formation + Delta-G solvation = -12.039003 kcal Electronic energy + Delta-G solvation = -17759.580135 eV Core-core repulsion = 15015.659554 eV Total energy + Delta-G solvation = -2743.920581 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.29244 -38.14743 -36.17738 -33.13628 -31.88835 -30.79228 -28.87830 -27.29445 -26.72912 -24.35190 -22.90574 -21.64443 -21.20545 -18.98292 -17.56767 -16.39373 -16.16406 -15.76877 -15.35861 -14.83464 -14.75292 -14.02665 -13.76760 -13.42654 -13.10970 -12.84413 -12.55416 -12.10718 -11.89716 -11.70659 -11.54339 -11.28128 -11.08156 -10.97614 -10.77365 -10.55066 -10.44177 -10.18080 -9.71613 -9.17611 -8.44336 -8.31595 -7.92588 -7.23344 -6.01550 -4.03115 1.56621 1.65122 3.33712 3.34982 3.38939 3.42227 3.95478 4.43734 4.87124 4.90646 4.97899 5.05757 5.08277 5.29199 5.34194 5.34729 5.49519 5.51742 5.74884 5.83839 5.90432 5.99498 6.20745 6.28089 6.34063 6.49497 6.56993 6.61676 6.65973 6.94646 6.99826 7.28465 7.34337 7.53907 7.80799 8.07856 8.20966 8.54648 9.04262 9.61240 11.09291 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.036747 B = 0.005313 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.785034 B = 5268.667200 C = 5758.449080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.315 6.315 3 C 0.120 3.880 4 C -0.220 4.220 5 C -0.089 4.089 6 C -0.154 4.154 7 C -0.029 4.029 8 C -0.095 4.095 9 C -0.063 4.063 10 C 0.050 3.950 11 N -0.531 5.531 12 C 0.192 3.808 13 C -0.509 4.509 14 H 0.063 0.937 15 C 0.056 3.944 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.288 1.288 19 H -0.277 1.277 20 H -0.276 1.276 21 C 0.100 3.900 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.096 0.904 25 H 0.122 0.878 26 H 0.120 0.880 27 H 0.123 0.877 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.026 0.974 31 H 0.074 0.926 32 H -0.008 1.008 33 H 0.033 0.967 34 H 0.262 0.738 35 H 0.097 0.903 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.147 -1.056 -2.856 18.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.229 6.229 3 C 0.075 3.925 4 C -0.239 4.239 5 C -0.107 4.107 6 C -0.173 4.173 7 C -0.029 4.029 8 C -0.096 4.096 9 C -0.100 4.100 10 C -0.079 4.079 11 N -0.255 5.255 12 C 0.067 3.933 13 C -0.548 4.548 14 H 0.081 0.919 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.214 1.214 19 H -0.203 1.203 20 H -0.201 1.201 21 C -0.028 4.028 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.114 0.886 25 H 0.139 0.861 26 H 0.138 0.862 27 H 0.141 0.859 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.093 0.907 32 H 0.010 0.990 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.115 0.885 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -17.967 -1.369 -2.395 18.177 hybrid contribution 0.304 1.030 -0.183 1.089 sum -17.663 -0.338 -2.578 17.853 Atomic orbital electron populations 1.22986 0.79092 1.03473 1.01043 1.86059 1.20707 1.27196 1.88909 1.18941 0.91776 0.83938 0.97866 1.21032 0.99360 0.92534 1.10942 1.20742 0.94456 0.96680 0.98856 1.21001 0.93600 0.98142 1.04554 1.19827 0.96473 0.91509 0.95125 1.18980 0.89729 0.95999 1.04869 1.20345 0.94074 0.93424 1.02196 1.22117 0.94714 0.96198 0.94891 1.62429 1.09434 1.01415 1.52259 1.19779 0.79766 0.97935 0.95843 1.21129 0.91800 1.22590 1.19271 0.91894 1.24982 0.96863 0.96510 0.96153 1.69951 1.02760 1.42288 1.38825 0.86562 0.77483 0.81521 0.81857 1.21369 1.20273 1.20139 1.20905 0.87401 0.94992 0.99516 0.92924 0.93003 0.88579 0.86056 0.86228 0.85921 0.90326 0.91165 0.95580 0.90723 0.98988 0.94851 0.92862 0.88492 0.94052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.33 9.63 -19.41 -0.19 -4.52 16 3 C 0.12 1.83 6.65 -39.13 -0.26 1.57 16 4 C -0.22 -2.93 9.03 -39.50 -0.36 -3.28 16 5 C -0.09 -1.19 10.04 -39.68 -0.40 -1.59 16 6 C -0.15 -2.36 9.64 -39.45 -0.38 -2.74 16 7 C -0.03 -0.51 5.79 -104.64 -0.61 -1.12 16 8 C -0.09 -1.64 5.78 -104.46 -0.60 -2.25 16 9 C -0.06 -1.07 5.54 -27.93 -0.15 -1.22 16 10 C 0.05 0.94 5.57 -3.74 -0.02 0.92 16 11 N -0.53 -11.87 4.68 -237.63 -1.11 -12.98 16 12 C 0.19 5.04 4.71 -4.97 -0.02 5.01 16 13 C -0.51 -14.33 8.56 -34.44 -0.29 -14.63 16 14 H 0.06 1.75 7.09 -52.49 -0.37 1.38 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 17 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C 0.10 2.03 4.96 -5.15 -0.03 2.00 16 22 H 0.05 0.43 7.65 -51.93 -0.40 0.03 16 23 H 0.05 0.41 7.65 -51.93 -0.40 0.01 16 24 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.12 1.27 6.28 -52.48 -0.33 0.94 16 26 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 27 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 28 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 29 H 0.07 1.07 7.85 -51.93 -0.41 0.66 16 30 H 0.03 0.49 8.05 -51.93 -0.42 0.07 16 31 H 0.07 1.38 7.87 -51.93 -0.41 0.97 16 32 H -0.01 -0.21 8.07 -51.93 -0.42 -0.63 16 33 H 0.03 0.93 7.91 -51.93 -0.41 0.52 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.10 2.05 6.94 -51.93 -0.36 1.69 16 36 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 LS Contribution 294.15 15.07 4.43 4.43 Total: -1.00 -30.90 294.15 -8.55 -39.44 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -5.17 Total: -2.47 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -2.23 Total: -14.57 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: -0.37 Total: -38.96 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.19 Total: -4.52 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.90 -8.55 -39.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273022962.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.404 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds