Wall clock time and date at job start Sun Mar 29 2020 23:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35894 * 117.00525 * 2 1 4 4 C 1.38581 * 119.88173 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.76427 * 180.02562 * 4 3 2 6 6 C 1.38086 * 119.93368 * 0.07331 * 5 4 3 7 7 C 1.38731 * 120.49395 * 359.97438 * 6 5 4 8 8 C 1.37788 * 119.75751 * 359.88215 * 7 6 5 9 9 C 1.50707 * 121.68381 * 180.48523 * 8 7 6 10 10 C 1.52899 * 109.95774 * 343.04148 * 9 8 7 11 11 N 1.47156 * 108.50185 * 50.38949 * 10 9 8 12 12 C 1.46903 * 111.00256 * 165.33568 * 11 10 9 13 13 C 1.50699 * 109.46994 * 189.04546 * 12 11 10 14 14 H 1.08002 * 120.00516 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99783 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99707 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99956 * 180.27458 * 15 13 12 18 18 H 1.48497 * 109.47172 * 179.72730 * 17 15 13 19 19 H 1.48506 * 109.47132 * 299.72429 * 17 15 13 20 20 H 1.48501 * 109.47173 * 59.72550 * 17 15 13 21 21 C 1.46636 * 110.25867 * 288.76468 * 11 10 9 22 22 H 1.08999 * 109.46824 * 300.00112 * 1 2 3 23 23 H 1.09003 * 109.46862 * 59.99861 * 1 2 3 24 24 H 1.09001 * 109.47256 * 180.02562 * 1 2 3 25 25 H 1.08005 * 120.11848 * 359.97438 * 4 3 2 26 26 H 1.08007 * 120.03394 * 180.02562 * 5 4 3 27 27 H 1.07996 * 119.75260 * 179.97438 * 6 5 4 28 28 H 1.08997 * 109.39473 * 103.19275 * 9 8 7 29 29 H 1.09000 * 109.38980 * 223.00258 * 9 8 7 30 30 H 1.09003 * 109.63400 * 290.68565 * 10 9 8 31 31 H 1.09001 * 109.63147 * 170.09660 * 10 9 8 32 32 H 1.09001 * 109.46349 * 69.04802 * 12 11 10 33 33 H 1.08997 * 109.46851 * 309.04785 * 12 11 10 34 34 H 0.97005 * 119.99656 * 179.97438 * 16 15 13 35 35 H 1.09003 * 109.26936 * 172.79645 * 21 11 10 36 36 H 1.09003 * 109.26617 * 292.27290 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2890 2.3715 0.0005 5 6 1.9187 3.6008 0.0000 6 6 3.2979 3.6686 -0.0026 7 6 4.0597 2.5091 -0.0042 8 6 3.4355 1.2807 -0.0006 9 6 4.2202 -0.0059 0.0087 10 6 5.6672 0.2623 -0.4061 11 7 6.1857 1.3773 0.4023 12 6 7.6494 1.4599 0.3080 13 6 8.1617 2.4603 1.3118 14 1 7.4693 2.9829 1.9553 15 6 9.5145 2.7094 1.4081 16 7 10.3575 2.0742 0.6236 17 14 10.1503 3.9437 2.6577 18 1 11.6302 4.0238 2.5656 19 1 9.5639 5.2789 2.3771 20 1 9.7621 3.5098 4.0238 21 6 5.5605 2.6377 -0.0109 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.2105 2.3151 0.0005 26 1 1.3330 4.5083 0.0008 27 1 3.7872 4.6313 -0.0034 28 1 4.2044 -0.4322 1.0117 29 1 3.7694 -0.7098 -0.6909 30 1 5.7020 0.5287 -1.4625 31 1 6.2698 -0.6288 -0.2302 32 1 7.9313 1.7760 -0.6964 33 1 8.0826 0.4817 0.5162 34 1 11.3091 2.2497 0.6911 35 1 5.8569 3.4290 0.6778 36 1 5.8952 2.8926 -1.0164 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273022962.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:19 Heat of formation + Delta-G solvation = -31.676794 kcal Electronic energy + Delta-G solvation = -17760.431693 eV Core-core repulsion = 15015.659554 eV Total energy + Delta-G solvation = -2744.772139 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.45356 -39.43083 -37.55817 -35.05419 -33.50434 -32.13970 -30.21172 -28.70291 -28.02174 -26.02281 -24.37193 -23.20659 -22.60603 -20.38515 -18.72268 -18.42023 -17.43767 -16.77835 -16.58875 -16.50836 -16.22772 -15.66072 -15.25647 -14.65080 -14.37147 -14.34581 -14.16746 -13.58096 -13.43035 -13.05903 -12.93289 -12.73248 -12.63265 -12.50530 -12.31585 -12.11035 -11.92835 -11.80322 -11.32884 -11.19322 -10.61552 -9.58859 -9.14670 -8.94891 -8.20693 -6.31286 0.38677 0.51240 1.41575 1.45144 1.53085 2.40436 2.42033 2.78911 3.11377 3.25412 3.77669 3.80517 4.10827 4.14245 4.25825 4.40169 4.45331 4.46992 4.51301 4.55167 4.63178 4.73420 4.78117 4.82260 4.92733 5.02914 5.12179 5.21069 5.30316 5.40373 5.51494 5.64332 5.71037 5.84359 6.02203 6.31295 6.52299 6.56850 6.83664 7.38499 8.90457 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.036747 B = 0.005313 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.785034 B = 5268.667200 C = 5758.449080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.332 6.332 3 C 0.117 3.883 4 C -0.211 4.211 5 C -0.080 4.080 6 C -0.164 4.164 7 C -0.053 4.053 8 C -0.123 4.123 9 C -0.052 4.052 10 C 0.049 3.951 11 N -0.540 5.540 12 C 0.207 3.793 13 C -0.527 4.527 14 H 0.062 0.938 15 C 0.004 3.996 16 N -0.934 5.934 17 Si 0.970 3.030 18 H -0.282 1.282 19 H -0.266 1.266 20 H -0.269 1.269 21 C 0.107 3.893 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.117 0.883 25 H 0.157 0.843 26 H 0.157 0.843 27 H 0.132 0.868 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.025 0.975 31 H 0.073 0.927 32 H -0.035 1.035 33 H 0.008 0.992 34 H 0.265 0.735 35 H 0.080 0.920 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.900 -0.058 -2.222 21.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.072 3.928 4 C -0.230 4.230 5 C -0.097 4.097 6 C -0.183 4.183 7 C -0.054 4.054 8 C -0.124 4.124 9 C -0.089 4.089 10 C -0.079 4.079 11 N -0.264 5.264 12 C 0.080 3.920 13 C -0.565 4.565 14 H 0.080 0.920 15 C -0.194 4.194 16 N -0.574 5.574 17 Si 0.794 3.206 18 H -0.207 1.207 19 H -0.191 1.191 20 H -0.194 1.194 21 C -0.021 4.021 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.135 0.865 25 H 0.175 0.825 26 H 0.175 0.825 27 H 0.150 0.850 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.044 0.956 31 H 0.091 0.909 32 H -0.018 1.018 33 H 0.027 0.973 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -20.755 -0.380 -1.767 20.834 hybrid contribution 1.023 0.661 -0.424 1.289 sum -19.733 0.281 -2.191 19.856 Atomic orbital electron populations 1.23344 0.76483 1.05466 1.02267 1.86037 1.23375 1.26595 1.88629 1.18970 0.91142 0.85330 0.97373 1.21459 1.01088 0.91635 1.08769 1.21156 0.93601 0.98297 0.96694 1.21183 0.94792 0.97606 1.04676 1.19646 0.94634 0.93123 0.97995 1.19049 0.91245 0.95449 1.06630 1.20219 0.92288 0.94239 1.02148 1.22189 0.96356 0.94908 0.94469 1.62341 1.07085 1.03410 1.53593 1.19438 0.82481 0.96065 0.93967 1.21406 0.92337 1.23093 1.19644 0.92001 1.25909 0.96972 0.98430 0.98114 1.70080 1.03157 1.43754 1.40421 0.85426 0.76959 0.79111 0.79072 1.20690 1.19064 1.19434 1.20756 0.89757 0.93387 0.98228 0.91738 0.91541 0.86467 0.82534 0.82532 0.84992 0.90991 0.89382 0.95647 0.90883 1.01756 0.97349 0.92594 0.90177 0.95280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.33 -8.28 9.63 -92.35 -0.89 -9.17 16 3 C 0.12 3.31 6.65 22.56 0.15 3.46 16 4 C -0.21 -4.80 9.03 22.32 0.20 -4.60 16 5 C -0.08 -1.83 10.04 22.21 0.22 -1.61 16 6 C -0.16 -4.79 9.64 22.35 0.22 -4.57 16 7 C -0.05 -1.91 5.79 -19.88 -0.12 -2.03 16 8 C -0.12 -4.19 5.78 -19.76 -0.11 -4.31 16 9 C -0.05 -1.76 5.54 29.82 0.17 -1.60 16 10 C 0.05 1.95 5.57 86.22 0.48 2.43 16 11 N -0.54 -25.34 4.68 -905.71 -4.23 -29.57 16 12 C 0.21 11.49 4.71 85.56 0.40 11.89 16 13 C -0.53 -30.65 8.56 25.60 0.22 -30.43 16 14 H 0.06 3.54 7.09 -2.91 -0.02 3.52 16 15 C 0.00 0.23 5.46 84.66 0.46 0.69 16 16 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 17 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 C 0.11 4.53 4.96 85.59 0.42 4.95 16 22 H 0.06 0.77 7.65 -2.39 -0.02 0.76 16 23 H 0.07 0.76 7.65 -2.39 -0.02 0.74 16 24 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.16 2.42 6.28 -2.91 -0.02 2.40 16 26 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 27 H 0.13 3.48 8.06 -2.91 -0.02 3.45 16 28 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.09 2.64 7.85 -2.39 -0.02 2.62 16 30 H 0.03 1.00 8.05 -2.39 -0.02 0.98 16 31 H 0.07 2.85 7.87 -2.39 -0.02 2.83 16 32 H -0.04 -2.10 8.07 -2.39 -0.02 -2.12 16 33 H 0.01 0.50 7.91 -2.39 -0.02 0.48 16 34 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 35 H 0.08 3.57 6.94 -2.39 -0.02 3.55 16 36 H 0.03 1.27 8.08 -2.39 -0.02 1.25 16 Total: -1.00 -68.42 294.15 2.07 -66.35 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 1.06 Total: 6.58 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 3.83 Total: -24.35 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -3.95 Total: -86.25 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -0.89 Total: -9.17 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -68.42 2.07 -66.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273022962.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.675 kcal (2) G-P(sol) polarization free energy of solvation -68.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds