Wall clock time and date at job start Sun Mar 29 2020 22:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47040 * 2 1 4 4 N 1.46503 * 109.46761 * 179.97438 * 3 2 1 5 5 C 1.46508 * 120.00014 * 89.99914 * 4 3 2 6 6 C 1.50700 * 109.46958 * 269.99912 * 5 4 3 7 7 C 1.38231 * 119.99768 * 90.00129 * 6 5 4 8 8 C 1.38241 * 119.99814 * 179.97438 * 7 6 5 9 9 C 1.38234 * 120.00027 * 359.97141 * 8 7 6 10 10 C 1.38241 * 119.99982 * 0.28721 * 9 8 7 11 11 C 1.38229 * 119.99820 * 269.97640 * 6 5 4 12 12 C 1.34774 * 120.00019 * 269.99754 * 4 3 2 13 13 O 1.21690 * 120.00006 * 179.97438 * 12 4 3 14 14 C 1.46369 * 120.00048 * 0.02562 * 12 4 3 15 15 H 1.08002 * 120.00295 * 355.03547 * 14 12 4 16 16 C 1.40058 * 120.00235 * 175.03159 * 14 12 4 17 17 N 1.30672 * 119.99474 * 6.22210 * 16 14 12 18 18 Si 1.86799 * 119.99938 * 186.22208 * 16 14 12 19 19 H 1.48497 * 109.47065 * 94.98277 * 18 16 14 20 20 H 1.48503 * 109.46728 * 214.98301 * 18 16 14 21 21 H 1.48496 * 109.47084 * 334.98063 * 18 16 14 22 22 H 1.09000 * 109.46667 * 60.00354 * 1 2 3 23 23 H 1.09000 * 109.46771 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47178 * 300.00174 * 1 2 3 25 25 H 1.09002 * 109.47150 * 239.99458 * 2 1 3 26 26 H 1.09003 * 109.46729 * 120.00180 * 2 1 3 27 27 H 1.08994 * 109.47277 * 59.99887 * 3 2 1 28 28 H 1.09000 * 109.47102 * 299.99380 * 3 2 1 29 29 H 1.09001 * 109.46844 * 149.99621 * 5 4 3 30 30 H 1.09001 * 109.46843 * 30.00157 * 5 4 3 31 31 H 1.07993 * 120.00574 * 359.97438 * 7 6 5 32 32 H 1.08002 * 120.00160 * 179.97438 * 8 7 6 33 33 H 1.08003 * 120.00413 * 180.02562 * 9 8 7 34 34 H 1.07996 * 120.00008 * 179.72253 * 10 9 8 35 35 H 1.07998 * 120.00494 * 0.02562 * 11 6 5 36 36 H 0.96996 * 119.99499 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2381 1.4421 -1.2679 6 6 4.4894 0.0212 -1.7025 7 6 3.5682 -0.6305 -2.5009 8 6 3.7989 -1.9337 -2.9000 9 6 4.9512 -2.5850 -2.5013 10 6 5.8699 -1.9350 -1.6985 11 6 5.6414 -0.6302 -1.3032 12 6 4.1784 1.4426 1.1681 13 8 5.3953 1.4420 1.1686 14 6 3.4461 1.4423 2.4354 15 1 2.3691 1.5229 2.4367 16 6 4.1419 1.3374 3.6463 17 7 5.4484 1.3624 3.6533 18 14 3.2023 1.1620 5.2513 19 1 3.0856 -0.2763 5.6018 20 1 3.9289 1.8773 6.3309 21 1 1.8456 1.7455 5.0969 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.6768 1.9562 -0.8900 29 1 5.1905 1.9560 -1.1372 30 1 3.6494 1.9559 -2.0278 31 1 2.6682 -0.1216 -2.8128 32 1 3.0790 -2.4431 -3.5235 33 1 5.1317 -3.6030 -2.8134 34 1 6.7680 -2.4454 -1.3832 35 1 6.3611 -0.1210 -0.6795 36 1 5.9303 1.2894 4.4919 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274143968.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:46 Heat of formation + Delta-G solvation = -40.583574 kcal Electronic energy + Delta-G solvation = -18204.981864 eV Core-core repulsion = 15459.823497 eV Total energy + Delta-G solvation = -2745.158366 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.54520 -39.17523 -36.53794 -34.76568 -33.83266 -32.11806 -31.69508 -28.82126 -27.23001 -25.91177 -23.37444 -22.70071 -22.24681 -20.87837 -18.39532 -17.75806 -17.62884 -16.51355 -16.19042 -16.12938 -15.60129 -15.19786 -15.01608 -14.44933 -14.20627 -13.98570 -13.60853 -13.46580 -13.25087 -12.94426 -12.82977 -12.78879 -12.59660 -12.24065 -12.06651 -11.93533 -11.82067 -11.72882 -11.38287 -10.91638 -9.88876 -9.72932 -9.48688 -9.03900 -8.26835 -6.78948 0.49137 0.56295 1.37015 1.37959 1.53079 2.23138 2.49244 2.76045 3.19309 3.64007 3.96674 4.04436 4.21206 4.22200 4.31820 4.37243 4.42204 4.61534 4.66201 4.74159 4.82516 4.85716 4.90129 5.13557 5.19146 5.22096 5.27721 5.37221 5.43525 5.58322 5.61130 5.66261 5.78337 5.92287 6.18312 6.21006 6.45770 6.91079 7.47592 8.52183 8.71293 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.021193 B = 0.007965 C = 0.006797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.883443 B = 3514.455620 C = 4118.568935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.126 3.874 4 N -0.637 5.637 5 C 0.160 3.840 6 C -0.103 4.103 7 C -0.108 4.108 8 C -0.123 4.123 9 C -0.125 4.125 10 C -0.138 4.138 11 C -0.125 4.125 12 C 0.544 3.456 13 O -0.625 6.625 14 C -0.564 4.564 15 H 0.088 0.912 16 C 0.030 3.970 17 N -0.821 5.821 18 Si 0.987 3.013 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.246 1.246 22 H 0.072 0.928 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.029 0.971 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.100 0.900 31 H 0.143 0.857 32 H 0.155 0.845 33 H 0.148 0.852 34 H 0.124 0.876 35 H 0.084 0.916 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.599 -5.395 -10.748 15.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.178 4.178 3 C 0.003 3.997 4 N -0.371 5.371 5 C 0.037 3.963 6 C -0.104 4.104 7 C -0.126 4.126 8 C -0.141 4.141 9 C -0.143 4.143 10 C -0.156 4.156 11 C -0.144 4.144 12 C 0.350 3.650 13 O -0.512 6.512 14 C -0.601 4.601 15 H 0.106 0.894 16 C -0.185 4.185 17 N -0.451 5.451 18 Si 0.807 3.193 19 H -0.192 1.192 20 H -0.198 1.198 21 H -0.169 1.169 22 H 0.091 0.909 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.063 0.937 30 H 0.118 0.882 31 H 0.160 0.840 32 H 0.173 0.827 33 H 0.166 0.834 34 H 0.142 0.858 35 H 0.102 0.898 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.788 -5.345 -10.664 14.816 hybrid contribution 0.488 0.067 1.151 1.252 sum -8.300 -5.278 -9.513 13.684 Atomic orbital electron populations 1.21645 0.93488 1.02094 1.02371 1.21974 0.97120 0.97445 1.01243 1.21478 0.79268 0.96751 1.02158 1.47956 1.06478 1.78380 1.04320 1.20098 0.97159 0.92420 0.86639 1.20472 0.94674 0.97764 0.97514 1.21205 0.98466 0.95594 0.97378 1.21482 0.97795 0.94509 1.00293 1.21430 0.94298 1.00778 0.97752 1.21322 1.00772 0.94236 0.99242 1.21165 0.98113 0.96156 0.98997 1.18551 0.86594 0.75749 0.84112 1.90533 1.16150 1.57037 1.87465 1.21476 0.94895 1.53700 0.90001 0.89373 1.26916 0.95457 0.91585 1.04545 1.70201 1.09558 1.36890 1.28474 0.85162 0.79304 0.79036 0.75824 1.19200 1.19779 1.16893 0.90884 0.92195 0.92996 0.91417 0.95255 0.91751 0.89604 0.93745 0.88218 0.83973 0.82748 0.83394 0.85799 0.89771 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.91 71.98 0.71 -2.57 16 2 C -0.14 -4.51 6.26 30.59 0.19 -4.32 16 3 C 0.13 4.51 5.20 86.38 0.45 4.96 16 4 N -0.64 -29.01 2.46 -831.25 -2.04 -31.05 16 5 C 0.16 6.42 5.58 85.63 0.48 6.90 16 6 C -0.10 -3.85 5.39 -19.87 -0.11 -3.96 16 7 C -0.11 -3.11 7.54 22.27 0.17 -2.94 16 8 C -0.12 -3.06 10.05 22.27 0.22 -2.84 16 9 C -0.12 -3.34 10.05 22.27 0.22 -3.12 16 10 C -0.14 -4.67 10.05 22.27 0.22 -4.45 16 11 C -0.13 -5.22 9.70 22.27 0.22 -5.01 16 12 C 0.54 31.80 7.61 86.36 0.66 32.45 16 13 O -0.63 -41.98 14.14 -4.32 -0.06 -42.04 16 14 C -0.56 -32.23 8.76 24.83 0.22 -32.02 16 15 H 0.09 4.56 5.95 -2.91 -0.02 4.55 16 16 C 0.03 1.69 5.49 85.31 0.47 2.16 16 17 N -0.82 -51.17 11.85 21.84 0.26 -50.91 16 18 Si 0.99 41.91 29.56 68.60 2.03 43.94 16 19 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 20 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 21 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 22 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.07 2.09 5.26 -2.39 -0.01 2.08 16 26 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.06 2.47 6.03 -2.39 -0.01 2.45 16 28 H 0.09 2.40 7.89 -2.39 -0.02 2.38 16 29 H 0.04 2.06 7.36 -2.39 -0.02 2.04 16 30 H 0.10 3.11 7.84 -2.39 -0.02 3.09 16 31 H 0.14 3.27 7.73 -2.91 -0.02 3.25 16 32 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 33 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 34 H 0.12 3.80 8.06 -2.91 -0.02 3.77 16 35 H 0.08 4.20 7.58 -2.91 -0.02 4.17 16 36 H 0.27 15.40 8.29 -92.71 -0.77 14.63 16 Total: -1.00 -76.90 301.59 5.37 -71.53 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 1.06 Total: 23.28 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: 4.12 Total: -14.75 kcal Atomic # 7 Polarization: -80.18 SS G_CDS: -1.78 Total: -81.96 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -0.06 Total: -42.04 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -76.90 5.37 -71.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274143968.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.950 kcal (2) G-P(sol) polarization free energy of solvation -76.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds