Wall clock time and date at job start Sun Mar 29 2020 22:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46941 * 2 1 4 4 C 1.52994 * 109.47314 * 120.00109 * 2 1 3 5 5 N 1.46508 * 109.46780 * 65.00104 * 4 2 1 6 6 C 1.34780 * 119.99675 * 270.00023 * 5 4 2 7 7 O 1.21742 * 119.99277 * 183.53121 * 6 5 4 8 8 C 1.46164 * 120.00528 * 3.52758 * 6 5 4 9 9 H 1.08000 * 119.99646 * 0.02562 * 8 6 5 10 10 C 1.40122 * 120.00232 * 180.02562 * 8 6 5 11 11 N 1.30634 * 119.99957 * 359.97438 * 10 8 6 12 12 Si 1.86797 * 119.99931 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47521 * 89.99839 * 12 10 8 14 14 H 1.48503 * 109.47185 * 209.99723 * 12 10 8 15 15 H 1.48502 * 109.47512 * 329.99802 * 12 10 8 16 16 C 1.39529 * 119.99979 * 90.00368 * 5 4 2 17 17 C 1.39025 * 120.08207 * 67.44755 * 16 5 4 18 18 C 1.38070 * 119.91063 * 179.97438 * 17 16 5 19 19 C 1.38329 * 120.08679 * 0.02562 * 18 17 16 20 20 C 1.38336 * 120.16426 * 359.97438 * 19 18 17 21 21 C 1.38058 * 120.08499 * 0.02562 * 20 19 18 22 22 H 1.09003 * 109.47424 * 59.99806 * 1 2 3 23 23 H 1.09000 * 109.47397 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47493 * 299.99840 * 1 2 3 25 25 H 1.08997 * 109.46806 * 240.00397 * 2 1 3 26 26 H 1.09005 * 109.47007 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47908 * 300.00356 * 3 2 1 28 28 H 1.09005 * 109.46845 * 60.00285 * 3 2 1 29 29 H 1.08998 * 109.47454 * 305.00329 * 4 2 1 30 30 H 1.08995 * 109.47525 * 185.00097 * 4 2 1 31 31 H 0.96996 * 119.99826 * 179.97438 * 11 10 8 32 32 H 1.07994 * 120.04330 * 359.70271 * 17 16 5 33 33 H 1.08003 * 119.95165 * 179.97438 * 18 17 16 34 34 H 1.07996 * 119.91422 * 179.97438 * 19 18 17 35 35 H 1.07994 * 119.95389 * 180.02562 * 20 19 18 36 36 H 1.08001 * 120.04224 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6524 -2.1329 1.1904 6 6 0.4768 -2.5313 1.7154 7 8 0.1834 -3.7128 1.7242 8 6 -0.4459 -1.5450 2.2742 9 1 -0.1857 -0.4968 2.2660 10 6 -1.6679 -1.9593 2.8205 11 7 -1.9828 -3.2271 2.8300 12 14 -2.8473 -0.6986 3.5340 13 1 -3.7678 -0.2239 2.4698 14 1 -3.6349 -1.3213 4.6282 15 1 -2.0769 0.4516 4.0713 16 6 2.5004 -3.0648 0.5909 17 6 3.7234 -3.3719 1.1764 18 6 4.5596 -4.2950 0.5805 19 6 4.1820 -4.9135 -0.5978 20 6 2.9658 -4.6105 -1.1832 21 6 2.1244 -3.6885 -0.5933 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9565 -0.8899 28 1 1.6766 1.9563 0.8901 29 1 1.6054 -0.2618 2.1369 30 1 3.1263 -0.6443 1.2951 31 1 -2.8285 -3.5139 3.2085 32 1 4.0210 -2.8858 2.0937 33 1 5.5100 -4.5337 1.0345 34 1 4.8384 -5.6348 -1.0617 35 1 2.6743 -5.0958 -2.1029 36 1 1.1752 -3.4522 -1.0512 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274701775.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:20 Heat of formation + Delta-G solvation = -32.843013 kcal Electronic energy + Delta-G solvation = -18381.617654 eV Core-core repulsion = 15636.794944 eV Total energy + Delta-G solvation = -2744.822711 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.98006 -38.88093 -37.13814 -34.99092 -34.15162 -31.76828 -30.76774 -28.77729 -27.40082 -26.69700 -23.79854 -23.35259 -21.30461 -20.94191 -18.54661 -17.88856 -17.62928 -16.70806 -16.29292 -16.11027 -15.42504 -15.04236 -14.99095 -14.43938 -14.25301 -13.81571 -13.67319 -13.40083 -13.19555 -13.14949 -12.81219 -12.66896 -12.33986 -12.25506 -12.12930 -12.03551 -11.79445 -11.63525 -11.29047 -10.89876 -9.95710 -9.80245 -9.75167 -8.92222 -8.27498 -6.76105 0.50462 0.54946 1.39052 1.39651 1.54197 2.22500 2.45825 2.77413 2.93895 3.63131 4.00463 4.08441 4.15782 4.21460 4.30410 4.33743 4.58703 4.65031 4.73610 4.75871 4.88272 4.95290 4.99947 5.12301 5.18142 5.20211 5.32333 5.37278 5.49449 5.54363 5.63386 5.70348 5.73280 5.87311 6.03660 6.21604 6.67130 6.89759 7.37721 8.49186 8.68964 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.022094 B = 0.008489 C = 0.006809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.003261 B = 3297.721227 C = 4110.946532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 C -0.133 4.133 4 C 0.130 3.870 5 N -0.604 5.604 6 C 0.544 3.456 7 O -0.626 6.626 8 C -0.545 4.545 9 H 0.103 0.897 10 C 0.028 3.972 11 N -0.822 5.822 12 Si 0.984 3.016 13 H -0.262 1.262 14 H -0.277 1.277 15 H -0.243 1.243 16 C 0.151 3.849 17 C -0.152 4.152 18 C -0.106 4.106 19 C -0.135 4.135 20 C -0.114 4.114 21 C -0.144 4.144 22 H 0.049 0.951 23 H 0.030 0.970 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.271 0.729 32 H 0.122 0.878 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.140 0.860 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.319 6.795 -5.249 13.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.124 4.124 3 C -0.191 4.191 4 C 0.008 3.992 5 N -0.334 5.334 6 C 0.352 3.648 7 O -0.513 6.513 8 C -0.581 4.581 9 H 0.121 0.879 10 C -0.187 4.187 11 N -0.452 5.452 12 Si 0.803 3.197 13 H -0.187 1.187 14 H -0.202 1.202 15 H -0.166 1.166 16 C 0.059 3.941 17 C -0.172 4.172 18 C -0.124 4.124 19 C -0.153 4.153 20 C -0.132 4.132 21 C -0.165 4.165 22 H 0.068 0.932 23 H 0.049 0.951 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.140 0.860 33 H 0.172 0.828 34 H 0.175 0.825 35 H 0.158 0.842 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.023 6.057 -5.170 12.801 hybrid contribution -1.088 0.051 0.336 1.140 sum 8.935 6.107 -4.834 11.853 Atomic orbital electron populations 1.21953 0.95524 1.00917 1.00735 1.21453 0.96091 0.97323 0.97561 1.21708 1.01225 0.93643 1.02517 1.21591 0.99177 0.79750 0.98710 1.45674 1.19633 1.07339 1.60796 1.18696 0.79902 0.88615 0.77557 1.90596 1.76551 1.20987 1.63126 1.21560 1.01625 0.94843 1.40098 0.87889 1.26940 1.00229 0.97377 0.94110 1.70200 1.21632 1.18267 1.35086 0.85211 0.77751 0.78450 0.78242 1.18701 1.20249 1.16620 1.18073 0.91318 0.92867 0.91818 1.21486 0.95147 1.00464 1.00118 1.21349 0.99974 0.95348 0.95776 1.21458 0.96567 1.00857 0.96392 1.21274 0.94595 0.96730 1.00621 1.21347 0.99377 0.99989 0.95747 0.93162 0.95112 0.92270 0.93026 0.91598 0.91740 0.92000 0.90593 0.90530 0.91876 0.86001 0.82751 0.82548 0.84184 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.03 7.56 71.98 0.54 -4.48 16 2 C -0.10 -3.43 3.13 -10.80 -0.03 -3.47 16 3 C -0.13 -3.18 9.19 71.98 0.66 -2.52 16 4 C 0.13 4.81 4.88 86.38 0.42 5.23 16 5 N -0.60 -28.42 2.40 -636.26 -1.53 -29.95 16 6 C 0.54 31.66 6.36 86.30 0.55 32.21 16 7 O -0.63 -42.88 14.73 -4.48 -0.07 -42.94 16 8 C -0.55 -29.79 6.45 24.79 0.16 -29.63 16 9 H 0.10 4.99 3.92 -2.91 -0.01 4.97 16 10 C 0.03 1.56 5.50 85.33 0.47 2.03 16 11 N -0.82 -50.50 11.82 21.85 0.26 -50.24 16 12 Si 0.98 40.50 29.56 68.60 2.03 42.53 16 13 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 14 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 15 H -0.24 -9.12 7.11 99.48 0.71 -8.42 16 16 C 0.15 6.64 4.77 38.30 0.18 6.82 16 17 C -0.15 -5.59 9.67 22.42 0.22 -5.37 16 18 C -0.11 -3.08 10.04 22.25 0.22 -2.86 16 19 C -0.13 -3.74 10.05 22.31 0.22 -3.52 16 20 C -0.11 -3.77 10.04 22.25 0.22 -3.55 16 21 C -0.14 -6.15 9.50 22.42 0.21 -5.94 16 22 H 0.05 1.62 8.14 -2.39 -0.02 1.61 16 23 H 0.03 1.43 5.76 -2.39 -0.01 1.42 16 24 H 0.06 2.20 6.34 -2.39 -0.02 2.18 16 25 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.08 2.88 6.25 -2.39 -0.01 2.87 16 30 H 0.08 2.43 7.84 -2.39 -0.02 2.41 16 31 H 0.27 15.24 8.29 -92.71 -0.77 14.47 16 32 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 33 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 34 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 35 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 36 H 0.09 4.09 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -76.04 296.37 5.81 -70.23 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 1.06 Total: 25.41 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: 4.06 Total: -15.04 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -1.27 Total: -80.19 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -0.07 Total: -42.94 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -76.04 5.81 -70.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274701775.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.386 kcal (2) G-P(sol) polarization free energy of solvation -76.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds