Wall clock time and date at job start Sun Mar 29 2020 22:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46510 * 109.46390 * 146.31222 * 3 2 1 5 5 C 1.37099 * 119.99958 * 263.42527 * 4 3 2 6 6 H 1.07994 * 120.00371 * 197.08630 * 5 4 3 7 7 C 1.38950 * 119.99736 * 17.09812 * 5 4 3 8 8 N 1.31410 * 120.00238 * 13.94480 * 7 5 4 9 9 Si 1.86805 * 119.99848 * 194.21559 * 7 5 4 10 10 H 1.48502 * 109.46988 * 264.73365 * 9 7 5 11 11 H 1.48503 * 109.46740 * 24.73144 * 9 7 5 12 12 H 1.48501 * 109.47045 * 144.73273 * 9 7 5 13 13 C 1.34771 * 119.99662 * 83.43772 * 4 3 2 14 14 O 1.21299 * 119.99654 * 183.93501 * 13 4 3 15 15 C 1.50697 * 120.00609 * 3.93203 * 13 4 3 16 16 C 1.53003 * 109.47329 * 93.63032 * 15 13 4 17 17 C 1.53004 * 117.49892 * 248.75086 * 16 15 13 18 18 C 1.52994 * 117.49907 * 180.09154 * 16 15 13 19 19 C 1.52997 * 109.47387 * 213.63206 * 15 13 4 20 20 C 1.53004 * 117.49802 * 134.27478 * 19 15 13 21 21 C 1.53001 * 117.49662 * 65.61601 * 19 15 13 22 22 H 4.40637 * 5.51528 * 180.02562 * 4 1 2 23 23 H 1.08997 * 109.47165 * 26.31554 * 3 2 1 24 24 H 1.08996 * 109.47384 * 266.30740 * 3 2 1 25 25 H 0.97004 * 120.00043 * 180.28033 * 8 7 5 26 26 H 1.09003 * 109.46933 * 333.63198 * 15 13 4 27 27 H 1.09004 * 115.54603 * 34.42105 * 16 15 13 28 28 H 1.08992 * 117.49603 * 0.02562 * 17 16 15 29 29 H 1.09003 * 117.49568 * 145.01913 * 17 16 15 30 30 H 1.09004 * 117.49599 * 214.98192 * 18 16 15 31 31 H 1.09004 * 117.50375 * 359.97354 * 18 16 15 32 32 H 1.08997 * 115.55204 * 279.94986 * 19 15 13 33 33 H 1.09002 * 117.49938 * 0.02562 * 20 19 15 34 34 H 1.08997 * 117.49576 * 145.02128 * 20 19 15 35 35 H 1.08998 * 117.49836 * 214.97568 * 21 19 15 36 36 H 1.08994 * 117.50143 * 359.97438 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.1503 -0.7662 5 6 3.4904 0.9963 -2.0810 6 1 4.0976 1.7454 -2.5671 7 6 3.0703 -0.1236 -2.7882 8 7 2.1205 -0.8902 -2.3012 9 14 3.8611 -0.5438 -4.4276 10 1 3.0400 0.0158 -5.5311 11 1 5.2263 0.0381 -4.4822 12 1 3.9457 -2.0193 -4.5726 13 6 3.2319 2.3591 -0.1784 14 8 3.5673 3.3251 -0.8307 15 6 2.9250 2.5106 1.2892 16 6 4.2188 2.3855 2.0964 17 6 4.3849 1.1455 2.9771 18 6 4.1169 2.5096 3.6179 19 6 2.2981 3.8835 1.5401 20 6 1.0575 3.9409 2.4338 21 6 0.9243 4.1559 0.9241 22 1 -1.0502 -0.0002 0.0003 23 1 3.0098 -0.9203 -0.4556 24 1 3.0094 0.0670 1.0255 25 1 1.8301 -1.6743 -2.7930 26 1 2.2280 1.7311 1.5970 27 1 5.1123 2.7861 1.6174 28 1 3.5727 0.4187 2.9812 29 1 5.3878 0.7305 3.0779 30 1 4.9436 2.9915 4.1400 31 1 3.1283 2.6808 4.0439 32 1 2.9983 4.7168 1.5969 33 1 0.6883 3.0006 2.8434 34 1 0.9415 4.8122 3.0784 35 1 0.7206 5.1686 0.5762 36 1 0.4674 3.3573 0.3398 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281017510.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:41 Heat of formation + Delta-G solvation = 82.020624 kcal Electronic energy + Delta-G solvation = -18476.345991 eV Core-core repulsion = 15736.504142 eV Total energy + Delta-G solvation = -2739.841849 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.41378 -37.07610 -35.85498 -34.98929 -32.08840 -31.15502 -28.82592 -26.40071 -24.44579 -22.36854 -21.91175 -21.03031 -20.55925 -18.49439 -17.80274 -16.70236 -16.26904 -15.50631 -14.96225 -14.30661 -14.17636 -14.00035 -13.49359 -13.30920 -12.46394 -12.28116 -12.14928 -11.55879 -11.29251 -11.24423 -11.11588 -11.02779 -10.87867 -10.49222 -10.31074 -10.14701 -9.93452 -9.82360 -9.45503 -9.33798 -9.29552 -8.81297 -8.23086 -7.80648 -6.26846 -3.83435 3.16648 3.26376 3.31904 3.68824 3.89184 4.04737 4.11267 4.15318 4.27848 4.80710 5.05718 5.07946 5.19730 5.31418 5.35656 5.44361 5.47939 5.53277 5.74961 5.84713 5.90867 5.97692 6.04980 6.12943 6.22347 6.32060 6.33896 6.46068 6.49911 6.54237 6.77784 6.90538 7.09487 7.58240 8.09953 8.48696 8.80955 9.18871 9.41533 9.98142 10.72777 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.023652 B = 0.007970 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.553604 B = 3512.421108 C = 3636.662499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.108 4.108 3 C 0.226 3.774 4 N -0.442 5.442 5 C -0.305 4.305 6 H 0.102 0.898 7 C 0.026 3.974 8 N -0.874 5.874 9 Si 0.925 3.075 10 H -0.280 1.280 11 H -0.270 1.270 12 H -0.283 1.283 13 C 0.465 3.535 14 O -0.580 6.580 15 C -0.043 4.043 16 C -0.131 4.131 17 C -0.182 4.182 18 C -0.175 4.175 19 C -0.113 4.113 20 C -0.186 4.186 21 C -0.171 4.171 22 H 0.198 0.802 23 H 0.121 0.879 24 H 0.060 0.940 25 H 0.267 0.733 26 H 0.082 0.918 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.082 1.548 10.300 10.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.110 4.110 3 C 0.103 3.897 4 N -0.161 5.161 5 C -0.432 4.432 6 H 0.120 0.880 7 C -0.176 4.176 8 N -0.514 5.514 9 Si 0.751 3.249 10 H -0.206 1.206 11 H -0.194 1.194 12 H -0.208 1.208 13 C 0.253 3.747 14 O -0.463 6.463 15 C -0.064 4.064 16 C -0.150 4.150 17 C -0.219 4.219 18 C -0.212 4.212 19 C -0.132 4.132 20 C -0.223 4.223 21 C -0.208 4.208 22 H 0.216 0.784 23 H 0.139 0.861 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.124 0.876 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.122 0.878 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.033 1.834 9.875 10.043 hybrid contribution -0.137 -0.455 -0.966 1.077 sum -0.104 1.379 8.908 9.015 Atomic orbital electron populations 1.24288 0.95395 1.03412 1.05786 1.23354 0.94484 0.97538 0.95610 1.18482 0.83949 0.93458 0.93820 1.43682 1.56060 1.05651 1.10670 1.19711 1.29789 1.07290 0.86442 0.88011 1.25289 0.95600 0.97177 0.99531 1.70016 1.25651 1.16544 1.39168 0.85938 0.79653 0.77517 0.81751 1.20589 1.19434 1.20844 1.19867 0.83501 0.83018 0.88290 1.90506 1.52252 1.37893 1.65656 1.20424 0.95488 0.96350 0.94152 1.22060 0.98863 1.02361 0.91674 1.23061 1.02759 0.91280 1.04757 1.22907 1.02681 1.00252 0.95392 1.21789 0.90324 0.97685 1.03372 1.23029 1.03133 1.02501 0.93634 1.22843 1.00638 1.02559 0.94805 0.78446 0.86138 0.92222 0.92245 0.90021 0.87617 0.88728 0.88881 0.89196 0.88760 0.87765 0.89251 0.89283 0.89229 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.64 19.25 29.55 0.57 -5.07 16 2 C -0.11 -2.45 10.95 -37.12 -0.41 -2.86 16 3 C 0.23 5.08 4.77 -6.82 -0.03 5.05 16 4 N -0.44 -11.24 2.61 -117.93 -0.31 -11.54 16 5 C -0.30 -8.43 9.37 -14.93 -0.14 -8.57 16 6 H 0.10 2.96 7.36 -52.49 -0.39 2.57 16 7 C 0.03 0.69 5.07 -17.47 -0.09 0.61 16 8 N -0.87 -22.96 9.10 55.50 0.50 -22.46 16 9 Si 0.92 20.74 29.58 -169.99 -5.03 15.71 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 C 0.46 11.32 6.33 -10.99 -0.07 11.25 16 14 O -0.58 -16.13 16.10 5.54 0.09 -16.04 16 15 C -0.04 -0.80 1.70 -91.77 -0.16 -0.96 16 16 C -0.13 -2.13 5.10 -90.62 -0.46 -2.59 16 17 C -0.18 -2.48 9.47 -26.69 -0.25 -2.73 16 18 C -0.18 -2.24 9.88 -26.70 -0.26 -2.51 16 19 C -0.11 -1.97 4.23 -90.62 -0.38 -2.35 16 20 C -0.19 -2.67 10.18 -26.69 -0.27 -2.94 16 21 C -0.17 -2.97 10.02 -26.69 -0.27 -3.24 16 22 H 0.20 3.37 7.80 -54.08 -0.42 2.95 16 23 H 0.12 2.89 6.10 -51.93 -0.32 2.57 16 24 H 0.06 1.15 4.88 -51.93 -0.25 0.90 16 25 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 26 H 0.08 1.53 5.34 -51.93 -0.28 1.25 16 27 H 0.11 1.85 8.11 -51.93 -0.42 1.43 16 28 H 0.09 1.27 7.11 -51.93 -0.37 0.90 16 29 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 33 H 0.09 1.24 8.08 -51.93 -0.42 0.82 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 LS Contribution 305.12 15.07 4.60 4.60 Total: -1.00 -30.38 305.12 -7.33 -37.71 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -4.96 Total: 8.94 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -2.23 Total: -16.92 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.20 Total: -34.00 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: 0.09 Total: -16.04 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.38 -7.33 -37.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281017510.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.732 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds