Wall clock time and date at job start Sun Mar 29 2020 23:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47321 * 201.99981 * 3 2 1 5 5 C 1.36825 * 119.99998 * 96.00061 * 4 3 2 6 6 H 1.07996 * 119.99994 * 161.82873 * 5 4 3 7 7 C 1.39072 * 119.99695 * 342.11209 * 5 4 3 8 8 N 1.31344 * 120.00481 * 337.30080 * 7 5 4 9 9 Si 1.86806 * 119.99619 * 157.30541 * 7 5 4 10 10 H 1.48491 * 109.47334 * 59.99588 * 9 7 5 11 11 H 1.48504 * 109.47092 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46876 * 299.99451 * 9 7 5 13 13 C 1.34771 * 120.00190 * 276.00509 * 4 3 2 14 14 O 1.21657 * 120.00223 * 179.97438 * 13 4 3 15 15 C 1.46951 * 119.99881 * 359.97438 * 13 4 3 16 16 C 1.33126 * 120.00009 * 179.97438 * 15 13 4 17 17 C 1.51837 * 126.34240 * 359.68931 * 16 15 13 18 18 C 1.55126 * 104.32138 * 156.13342 * 17 16 15 19 19 C 1.54986 * 102.22484 * 37.93103 * 18 17 16 20 20 H 1.09006 * 110.69384 * 81.36160 * 19 18 17 21 21 C 1.52998 * 110.57261 * 204.17007 * 19 18 17 22 22 C 1.51448 * 126.33888 * 179.97438 * 16 15 13 23 23 H 4.40638 * 5.51456 * 179.97438 * 4 1 2 24 24 H 1.08995 * 109.47475 * 82.00287 * 3 2 1 25 25 H 1.08999 * 109.47124 * 322.00056 * 3 2 1 26 26 H 0.97004 * 120.00408 * 180.02562 * 8 7 5 27 27 H 1.07997 * 119.99872 * 359.97438 * 15 13 4 28 28 H 1.09007 * 110.44078 * 274.97219 * 17 16 15 29 29 H 1.09002 * 110.44096 * 37.49058 * 17 16 15 30 30 H 1.08999 * 111.03957 * 279.69157 * 18 17 16 31 31 H 1.09000 * 110.73152 * 156.03818 * 18 17 16 32 32 H 1.08999 * 109.47152 * 175.78447 * 21 19 18 33 33 H 1.09001 * 109.47202 * 295.78812 * 21 19 18 34 34 H 1.09004 * 109.46696 * 55.78305 * 21 19 18 35 35 H 1.08999 * 109.98396 * 299.68316 * 22 16 15 36 36 H 1.08996 * 109.98645 * 60.95114 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2815 0.5174 5 6 3.4786 1.4000 1.8362 6 1 4.1006 2.2213 2.1600 7 6 3.0329 0.4593 2.7586 8 7 1.9636 -0.2582 2.5004 9 14 3.9553 0.2166 4.3648 10 1 3.9649 1.4906 5.1276 11 1 3.2822 -0.8357 5.1679 12 1 5.3517 -0.1979 4.0759 13 6 3.2429 2.3432 -0.3056 14 8 3.6475 3.4070 0.1242 15 6 2.8730 2.2159 -1.7220 16 6 2.9802 3.2647 -2.5349 17 6 3.4588 4.6541 -2.1526 18 6 3.9700 5.2637 -3.4843 19 6 2.9401 4.7240 -4.5091 20 1 2.0340 5.3300 -4.5001 21 6 3.5469 4.6878 -5.9131 22 6 2.6417 3.2947 -4.0107 23 1 -1.0501 -0.0002 -0.0003 24 1 3.0094 -0.1421 -1.0176 25 1 3.0097 -0.8090 0.6327 26 1 1.6525 -0.9140 3.1440 27 1 2.5142 1.2714 -2.1036 28 1 2.6341 5.2442 -1.7527 29 1 4.2699 4.5911 -1.4272 30 1 4.9730 4.9070 -3.7184 31 1 3.9439 6.3527 -3.4453 32 1 2.8355 4.2367 -6.6048 33 1 3.7746 5.7034 -6.2368 34 1 4.4631 4.0974 -5.8977 35 1 3.2592 2.5758 -4.5492 36 1 1.5869 3.0618 -4.1558 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281589952.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:09 Heat of formation + Delta-G solvation = 17.361311 kcal Electronic energy + Delta-G solvation = -17710.984383 eV Core-core repulsion = 14968.338695 eV Total energy + Delta-G solvation = -2742.645688 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.65857 -39.11768 -37.01300 -34.15933 -33.29458 -33.02423 -30.63455 -28.65634 -27.93140 -26.48973 -24.53354 -21.92221 -20.78065 -19.76346 -18.89957 -18.34132 -17.99885 -16.79970 -16.29417 -16.03853 -15.66118 -15.34090 -14.54448 -14.36340 -14.20892 -14.00612 -13.81912 -13.56791 -13.48545 -12.89574 -12.71509 -12.56609 -12.39287 -12.16950 -11.95104 -11.68480 -11.53440 -11.37877 -11.15371 -11.08331 -10.65499 -10.11798 -9.95504 -9.75403 -8.33857 -5.89665 0.61931 1.40826 1.43008 1.51922 2.04421 2.30717 2.38730 2.52971 3.13455 3.19773 3.67192 3.80491 3.88341 4.07313 4.15268 4.29708 4.52711 4.56083 4.65400 4.72431 4.73499 4.86332 4.93144 5.00118 5.08486 5.16569 5.22165 5.26581 5.39634 5.40808 5.45076 5.57611 5.59479 5.73267 6.13675 6.49404 7.13901 7.16737 7.44083 8.05619 8.64814 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.033650 B = 0.005746 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.885024 B = 4871.670269 C = 5485.317014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.154 4.154 3 C 0.234 3.766 4 N -0.447 5.447 5 C -0.353 4.353 6 H 0.074 0.926 7 C 0.003 3.997 8 N -0.868 5.868 9 Si 0.985 3.015 10 H -0.279 1.279 11 H -0.271 1.271 12 H -0.266 1.266 13 C 0.466 3.534 14 O -0.627 6.627 15 C -0.215 4.215 16 C -0.055 4.055 17 C -0.102 4.102 18 C -0.113 4.113 19 C -0.092 4.092 20 H 0.082 0.918 21 C -0.138 4.138 22 C -0.088 4.088 23 H 0.234 0.766 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.273 0.727 27 H 0.136 0.864 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.094 0.906 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.047 2.115 -14.141 14.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.155 4.155 3 C 0.112 3.888 4 N -0.164 5.164 5 C -0.481 4.481 6 H 0.092 0.908 7 C -0.201 4.201 8 N -0.505 5.505 9 Si 0.808 3.192 10 H -0.205 1.205 11 H -0.196 1.196 12 H -0.191 1.191 13 C 0.260 3.740 14 O -0.517 6.517 15 C -0.236 4.236 16 C -0.057 4.057 17 C -0.139 4.139 18 C -0.151 4.151 19 C -0.110 4.110 20 H 0.100 0.900 21 C -0.196 4.196 22 C -0.125 4.125 23 H 0.250 0.750 24 H 0.114 0.886 25 H 0.109 0.891 26 H 0.083 0.917 27 H 0.154 0.846 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.056 2.423 -13.808 14.019 hybrid contribution -0.013 -0.275 1.538 1.562 sum 0.043 2.149 -12.270 12.457 Atomic orbital electron populations 1.25139 0.96343 1.00473 1.04436 1.23460 0.95006 1.00007 0.97071 1.18304 0.84697 0.87285 0.98520 1.43766 1.55502 1.08650 1.08472 1.19514 1.31106 1.13316 0.84164 0.90782 1.26013 0.95444 0.96475 1.02153 1.70160 1.18865 1.23634 1.37807 0.85145 0.78821 0.77910 0.77319 1.20511 1.19570 1.19114 1.18924 0.83686 0.83280 0.88131 1.90516 1.53717 1.28609 1.78847 1.22021 1.08941 1.00477 0.92122 1.23122 0.91819 0.94366 0.96417 1.21632 1.00692 0.93133 0.98432 1.22675 0.98986 1.00534 0.92869 1.21983 0.98725 0.94868 0.95456 0.89977 1.21769 1.00843 1.02468 0.94470 1.21425 1.02637 0.98886 0.89522 0.74988 0.88574 0.89107 0.91684 0.84640 0.91837 0.92048 0.91082 0.90236 0.91497 0.91672 0.92540 0.88780 0.89384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.08 19.25 74.32 1.43 -8.64 16 2 C -0.15 -7.02 11.21 31.12 0.35 -6.67 16 3 C 0.23 10.77 4.79 84.57 0.40 11.18 16 4 N -0.45 -24.08 2.59 -649.72 -1.68 -25.77 16 5 C -0.35 -20.61 9.30 84.11 0.78 -19.82 16 6 H 0.07 4.64 7.40 -2.91 -0.02 4.61 16 7 C 0.00 0.17 4.83 84.97 0.41 0.58 16 8 N -0.87 -46.27 9.57 21.68 0.21 -46.06 16 9 Si 0.98 42.76 29.61 68.60 2.03 44.79 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 12 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 13 C 0.47 24.52 7.51 86.53 0.65 25.17 16 14 O -0.63 -37.00 13.40 -4.21 -0.06 -37.06 16 15 C -0.21 -8.78 8.99 23.40 0.21 -8.57 16 16 C -0.05 -1.90 6.15 -17.00 -0.10 -2.00 16 17 C -0.10 -3.62 5.44 30.94 0.17 -3.45 16 18 C -0.11 -2.80 6.39 32.00 0.20 -2.60 16 19 C -0.09 -1.87 3.49 -9.68 -0.03 -1.90 16 20 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 21 C -0.14 -2.09 9.12 71.98 0.66 -1.43 16 22 C -0.09 -2.10 6.19 30.52 0.19 -1.91 16 23 H 0.23 7.40 7.80 -4.41 -0.03 7.37 16 24 H 0.10 3.66 6.45 -2.39 -0.02 3.64 16 25 H 0.09 4.38 6.50 -2.39 -0.02 4.36 16 26 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 27 H 0.14 4.86 6.23 -2.91 -0.02 4.84 16 28 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 29 H 0.06 2.66 6.25 -2.39 -0.01 2.65 16 30 H 0.07 1.70 8.05 -2.39 -0.02 1.68 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.09 1.96 7.83 -2.39 -0.02 1.94 16 36 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -69.52 300.94 6.87 -62.65 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 1.06 Total: 21.54 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: 5.32 Total: -20.08 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -1.48 Total: -71.83 kcal Atomic # 8 Polarization: -37.00 SS G_CDS: -0.06 Total: -37.06 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -69.52 6.87 -62.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281589952.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.014 kcal (2) G-P(sol) polarization free energy of solvation -69.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds