Wall clock time and date at job start Sun Mar 29 2020 23:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.50699 * 109.47093 * 179.97438 * 13 12 2 15 15 C 1.38264 * 119.97805 * 269.73021 * 14 13 12 16 16 C 1.38296 * 120.03479 * 179.78590 * 15 14 13 17 17 C 1.37957 * 119.92395 * 0.46685 * 16 15 14 18 18 C 1.38603 * 120.04061 * 359.78312 * 17 16 15 19 19 C 1.37972 * 120.03689 * 359.97438 * 18 17 16 20 20 C 1.51082 * 107.27626 * 179.97438 * 18 17 16 21 21 O 1.43941 * 105.95599 * 17.68764 * 20 18 17 22 22 C 1.43949 * 104.95196 * 331.55639 * 21 20 18 23 23 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.00904 * 110.99622 * 321.04878 * 12 2 1 28 28 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 29 29 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 30 30 H 1.07991 * 119.98128 * 359.97438 * 15 14 13 31 31 H 1.08007 * 120.03824 * 180.24970 * 16 15 14 32 32 H 1.08001 * 120.03835 * 180.02562 * 19 18 17 33 33 H 1.08998 * 110.15498 * 136.81216 * 20 18 17 34 34 H 1.09005 * 110.15344 * 258.56952 * 20 18 17 35 35 H 1.08998 * 110.15846 * 147.56675 * 22 21 20 36 36 H 1.09000 * 110.15302 * 269.25103 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5885 -0.5212 -3.5558 15 6 3.9447 -0.5679 -3.8206 16 6 4.4108 -1.2540 -4.9272 17 6 3.5201 -1.8837 -5.7719 18 6 2.1602 -1.8325 -5.5094 19 6 1.6956 -1.1522 -4.4026 20 6 1.4626 -2.6068 -6.6032 21 8 2.4764 -3.4221 -7.2191 22 6 3.7029 -2.6912 -7.0357 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7089 1.1611 3.4845 27 1 1.4495 -1.4978 -1.4102 28 1 1.0871 0.6165 -2.5525 29 1 2.7588 1.0464 -2.1181 30 1 4.6407 -0.0709 -3.1612 31 1 5.4705 -1.2940 -5.1318 32 1 0.6359 -1.1127 -4.1978 33 1 0.6813 -3.2367 -6.1778 34 1 1.0361 -1.9211 -7.3353 35 1 4.5385 -3.3820 -6.9225 36 1 3.8759 -2.0291 -7.8841 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381401007.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:54 Heat of formation + Delta-G solvation = -33.776399 kcal Electronic energy + Delta-G solvation = -17221.986891 eV Core-core repulsion = 14477.123706 eV Total energy + Delta-G solvation = -2744.863185 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.59966 -38.95265 -37.43154 -34.71732 -32.78839 -32.43417 -30.20590 -28.67154 -27.25758 -26.46642 -24.44667 -22.66554 -22.13890 -21.62772 -18.46728 -17.57728 -17.31782 -17.08346 -16.73907 -16.22793 -15.94000 -15.32488 -15.21148 -14.67302 -14.44654 -13.96172 -13.86445 -13.50421 -13.46178 -13.37249 -12.86747 -12.76098 -12.72778 -12.52959 -12.19861 -12.14982 -11.86973 -11.71700 -11.07983 -11.00057 -10.48426 -9.82338 -9.43604 -8.98173 -8.09767 -6.21108 0.23950 0.38074 1.43891 1.45308 1.53205 2.43845 2.65685 2.97259 3.18495 3.22356 3.65766 3.80082 3.93252 4.03314 4.31541 4.43213 4.45180 4.51697 4.56556 4.62734 4.66207 4.76567 4.78027 4.87392 4.96935 5.07839 5.12198 5.31793 5.35991 5.38839 5.66619 5.69734 5.73278 5.80286 5.97906 6.25841 6.61809 6.77428 6.92554 7.48755 8.95415 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.040153 B = 0.004211 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.160785 B = 6647.497548 C = 6805.767700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.215 3.785 3 H 0.005 0.995 4 C -0.517 4.517 5 H 0.053 0.947 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.284 1.284 10 H -0.272 1.272 11 H -0.274 1.274 12 N -0.681 5.681 13 C 0.101 3.899 14 C -0.077 4.077 15 C -0.106 4.106 16 C -0.093 4.093 17 C -0.148 4.148 18 C -0.145 4.145 19 C -0.096 4.096 20 C 0.093 3.907 21 O -0.381 6.381 22 C 0.093 3.907 23 H 0.062 0.938 24 H 0.026 0.974 25 H 0.031 0.969 26 H 0.261 0.739 27 H 0.330 0.670 28 H 0.032 0.968 29 H 0.067 0.933 30 H 0.130 0.870 31 H 0.150 0.850 32 H 0.129 0.871 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.443 -4.000 -18.296 19.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.106 3.894 3 H 0.023 0.977 4 C -0.555 4.555 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.786 3.214 9 H -0.209 1.209 10 H -0.197 1.197 11 H -0.199 1.199 12 N -0.311 5.311 13 C -0.027 4.027 14 C -0.077 4.077 15 C -0.125 4.125 16 C -0.111 4.111 17 C -0.149 4.149 18 C -0.146 4.146 19 C -0.115 4.115 20 C 0.017 3.983 21 O -0.300 6.300 22 C 0.017 3.983 23 H 0.081 0.919 24 H 0.045 0.955 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.147 0.853 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.148 0.852 31 H 0.168 0.832 32 H 0.147 0.853 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.128 0.872 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.002 -3.999 -18.098 18.961 hybrid contribution -0.835 0.255 1.138 1.434 sum 3.166 -3.744 -16.960 17.655 Atomic orbital electron populations 1.22241 0.99883 0.99258 1.00197 1.18974 0.90152 0.92849 0.87389 0.97702 1.21406 1.30559 1.12502 0.91072 0.92884 1.25702 0.95426 0.95858 1.01825 1.69998 1.37950 1.24192 1.24083 0.85578 0.78654 0.78655 0.78507 1.20903 1.19743 1.19922 1.60744 1.57976 1.09310 1.03019 1.20824 0.98843 0.94703 0.88378 1.19868 0.94234 0.98332 0.95302 1.21203 0.94950 0.99123 0.97190 1.20603 1.00401 0.96752 0.93319 1.21321 0.94500 1.00712 0.98343 1.21199 0.95925 1.00328 0.97117 1.20365 1.00073 0.97621 0.93446 1.21841 0.91088 0.93475 0.91907 1.89041 1.17713 1.44705 1.78547 1.21884 0.88337 0.94707 0.93357 0.91877 0.95468 0.94980 0.92956 0.85262 0.94996 0.91495 0.85183 0.83227 0.85343 0.87722 0.88879 0.87176 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.49 8.94 71.98 0.64 -6.85 16 2 C 0.21 10.89 2.57 44.17 0.11 11.00 16 3 H 0.01 0.28 7.80 -2.39 -0.02 0.26 16 4 C -0.52 -28.92 8.84 25.60 0.23 -28.69 16 5 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 6 C 0.01 0.56 5.30 84.66 0.45 1.01 16 7 N -0.92 -53.15 11.32 21.45 0.24 -52.91 16 8 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 9 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 12 N -0.68 -28.96 6.22 -499.46 -3.11 -32.07 16 13 C 0.10 3.60 5.61 85.56 0.48 4.08 16 14 C -0.08 -2.33 5.40 -19.85 -0.11 -2.44 16 15 C -0.11 -2.94 9.70 22.29 0.22 -2.72 16 16 C -0.09 -2.14 10.04 22.22 0.22 -1.91 16 17 C -0.15 -3.40 6.32 -19.72 -0.12 -3.52 16 18 C -0.15 -3.55 6.32 -19.72 -0.12 -3.67 16 19 C -0.10 -2.62 9.70 22.22 0.22 -2.40 16 20 C 0.09 1.84 7.63 71.36 0.54 2.39 16 21 O -0.38 -8.47 11.72 -148.98 -1.75 -10.21 16 22 C 0.09 1.69 7.63 71.36 0.54 2.23 16 23 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 24 H 0.03 1.13 7.45 -2.38 -0.02 1.12 16 25 H 0.03 1.46 8.13 -2.39 -0.02 1.44 16 26 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 27 H 0.33 13.49 8.46 -89.69 -0.76 12.73 16 28 H 0.03 1.10 7.38 -2.39 -0.02 1.09 16 29 H 0.07 2.44 8.00 -2.39 -0.02 2.43 16 30 H 0.13 3.50 8.06 -2.92 -0.02 3.48 16 31 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 32 H 0.13 3.19 8.06 -2.91 -0.02 3.16 16 33 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -62.28 300.29 1.03 -61.25 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.31 Total: 19.29 kcal Atomic # 6 Polarization: -34.79 SS G_CDS: 3.30 Total: -31.49 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -2.86 Total: -84.98 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -1.75 Total: -10.21 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -62.28 1.03 -61.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381401007.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.471 kcal (2) G-P(sol) polarization free energy of solvation -62.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds