Wall clock time and date at job start Sun Mar 29 2020 23:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47388 * 2 1 4 4 C 1.50699 * 109.47463 * 239.99966 * 2 1 3 5 5 H 1.07999 * 120.00299 * 240.00558 * 4 2 1 6 6 C 1.37878 * 119.99826 * 59.99569 * 4 2 1 7 7 N 1.31512 * 120.00279 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99589 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47119 * 90.00506 * 8 6 4 10 10 H 1.48504 * 109.47005 * 210.00051 * 8 6 4 11 11 H 1.48498 * 109.47476 * 330.00323 * 8 6 4 12 12 N 1.46908 * 109.47117 * 119.99623 * 2 1 3 13 13 C 1.46896 * 111.00037 * 275.00268 * 12 2 1 14 14 C 1.50698 * 109.47088 * 180.02562 * 13 12 2 15 15 C 1.38262 * 119.97904 * 89.99738 * 14 13 12 16 16 C 1.38299 * 120.03984 * 180.02562 * 15 14 13 17 17 C 1.37970 * 119.91860 * 0.02562 * 16 15 14 18 18 C 1.38597 * 120.04003 * 0.02562 * 17 16 15 19 19 C 1.37977 * 120.03907 * 0.20468 * 18 17 16 20 20 C 1.51086 * 107.27258 * 179.97438 * 18 17 16 21 21 O 1.43934 * 105.95483 * 17.68099 * 20 18 17 22 22 C 1.43944 * 104.95386 * 331.55755 * 21 20 18 23 23 H 1.08998 * 109.46708 * 60.00174 * 1 2 3 24 24 H 1.08994 * 109.47105 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46943 * 300.00302 * 1 2 3 26 26 H 0.96997 * 120.00235 * 180.02562 * 7 6 4 27 27 H 1.00902 * 110.99289 * 38.95439 * 12 2 1 28 28 H 1.08999 * 109.47670 * 59.99441 * 13 12 2 29 29 H 1.09007 * 109.47111 * 299.99697 * 13 12 2 30 30 H 1.07992 * 119.98043 * 0.02562 * 15 14 13 31 31 H 1.07997 * 120.04566 * 180.02562 * 16 15 14 32 32 H 1.07998 * 120.03677 * 179.69064 * 19 18 17 33 33 H 1.09001 * 110.15204 * 136.80029 * 20 18 17 34 34 H 1.08999 * 110.15432 * 258.55690 * 20 18 17 35 35 H 1.09001 * 110.15538 * 147.56447 * 22 21 20 36 36 H 1.08994 * 110.15569 * 269.24773 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1414 -5.1122 11 1 3.6294 -1.7584 -3.7120 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5885 -0.5214 3.5558 15 6 3.9451 -0.5728 3.8174 16 6 4.4110 -1.2558 4.9262 17 6 3.5203 -1.8860 5.7705 18 6 2.1604 -1.8353 5.5076 19 6 1.6961 -1.1580 4.3989 20 6 1.4630 -2.6113 6.6004 21 8 2.4147 -2.7247 7.6743 22 6 3.7032 -2.6950 7.0333 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7089 1.1612 -3.4844 27 1 1.4495 -1.4979 1.4101 28 1 1.0871 0.6165 2.5525 29 1 2.7589 1.0463 2.1182 30 1 4.6415 -0.0795 3.1556 31 1 5.4706 -1.2957 5.1309 32 1 0.6368 -1.1227 4.1913 33 1 0.5782 -2.0717 6.9381 34 1 1.1847 -3.6013 6.2390 35 1 4.4351 -2.2158 7.6836 36 1 4.0245 -3.7074 6.7889 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381401008.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:57 Heat of formation + Delta-G solvation = -33.838261 kcal Electronic energy + Delta-G solvation = -17216.777134 eV Core-core repulsion = 14471.911266 eV Total energy + Delta-G solvation = -2744.865868 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.60158 -38.95487 -37.43086 -34.71823 -32.78815 -32.43424 -30.20677 -28.67332 -27.25916 -26.46504 -24.44882 -22.66723 -22.13949 -21.62896 -18.46869 -17.58057 -17.31069 -17.07042 -16.77565 -16.18704 -15.96182 -15.31288 -15.23527 -14.69079 -14.44451 -13.99709 -13.78248 -13.59578 -13.43970 -13.14521 -13.09489 -12.82016 -12.68302 -12.48992 -12.19427 -12.15872 -11.81052 -11.76539 -11.07800 -10.99299 -10.48931 -9.82383 -9.43744 -8.98135 -8.09834 -6.21185 0.23905 0.38079 1.43357 1.44132 1.55194 2.43883 2.66242 2.96841 3.18535 3.21672 3.65580 3.79798 3.93439 4.03075 4.31479 4.43678 4.44998 4.51381 4.56554 4.62730 4.66522 4.76634 4.77884 4.87387 4.96653 5.07885 5.12184 5.31635 5.35895 5.38907 5.66650 5.69652 5.72916 5.80438 5.97794 6.25862 6.61661 6.77825 6.92907 7.48827 8.95570 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.042175 B = 0.004183 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.739980 B = 6692.880360 C = 6890.270560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.214 3.786 3 H 0.005 0.995 4 C -0.515 4.515 5 H 0.053 0.947 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.680 5.680 13 C 0.101 3.899 14 C -0.077 4.077 15 C -0.106 4.106 16 C -0.093 4.093 17 C -0.148 4.148 18 C -0.145 4.145 19 C -0.096 4.096 20 C 0.093 3.907 21 O -0.380 6.380 22 C 0.093 3.907 23 H 0.062 0.938 24 H 0.032 0.968 25 H 0.026 0.974 26 H 0.261 0.739 27 H 0.331 0.669 28 H 0.031 0.969 29 H 0.066 0.934 30 H 0.130 0.870 31 H 0.150 0.850 32 H 0.129 0.871 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.572 -5.379 17.414 18.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.106 3.894 3 H 0.023 0.977 4 C -0.554 4.554 5 H 0.072 0.928 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.786 3.214 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.309 5.309 13 C -0.028 4.028 14 C -0.077 4.077 15 C -0.124 4.124 16 C -0.111 4.111 17 C -0.149 4.149 18 C -0.146 4.146 19 C -0.115 4.115 20 C 0.017 3.983 21 O -0.299 6.299 22 C 0.017 3.983 23 H 0.081 0.919 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.148 0.852 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.148 0.852 31 H 0.168 0.832 32 H 0.147 0.853 33 H 0.126 0.874 34 H 0.107 0.893 35 H 0.131 0.869 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.120 -5.192 17.342 18.565 hybrid contribution -0.839 0.096 -1.255 1.512 sum 3.281 -5.095 16.087 17.191 Atomic orbital electron populations 1.22240 0.99887 0.99284 1.00177 1.18983 0.90150 0.92859 0.87424 0.97740 1.21433 1.30478 1.12451 0.91034 0.92827 1.25704 0.95455 0.95846 1.01853 1.70002 1.38046 1.24206 1.24021 0.85519 0.78781 0.78219 0.78849 1.20116 1.20938 1.19566 1.60742 1.57956 1.09292 1.02956 1.20818 0.98810 0.94723 0.88399 1.19865 0.94220 0.98382 0.95273 1.21202 0.94951 0.99230 0.97065 1.20605 1.00436 0.96547 0.93488 1.21319 0.94471 1.00099 0.98976 1.21197 0.95995 0.99834 0.97547 1.20363 1.00069 0.97324 0.93732 1.21835 0.92581 0.99493 0.84411 1.89034 1.16233 1.95206 1.29384 1.21877 0.86616 0.99402 0.90399 0.91897 0.94920 0.95509 0.92973 0.85215 0.95060 0.91548 0.85180 0.83219 0.85339 0.87387 0.89302 0.86861 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.47 8.94 71.98 0.64 -6.83 16 2 C 0.21 10.83 2.57 44.17 0.11 10.94 16 3 H 0.00 0.26 7.80 -2.39 -0.02 0.24 16 4 C -0.52 -28.70 8.84 25.60 0.23 -28.48 16 5 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.53 5.30 84.66 0.45 0.98 16 7 N -0.92 -53.08 11.32 21.45 0.24 -52.84 16 8 Si 0.96 43.95 29.54 68.60 2.03 45.97 16 9 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 12 N -0.68 -28.71 6.22 -499.45 -3.11 -31.81 16 13 C 0.10 3.60 5.61 85.56 0.48 4.08 16 14 C -0.08 -2.33 5.40 -19.85 -0.11 -2.44 16 15 C -0.11 -2.93 9.70 22.29 0.22 -2.72 16 16 C -0.09 -2.14 10.04 22.22 0.22 -1.91 16 17 C -0.15 -3.40 6.32 -19.72 -0.12 -3.52 16 18 C -0.15 -3.55 6.32 -19.72 -0.12 -3.67 16 19 C -0.10 -2.61 9.70 22.22 0.22 -2.40 16 20 C 0.09 1.85 7.63 71.36 0.54 2.39 16 21 O -0.38 -8.29 11.72 -148.98 -1.75 -10.04 16 22 C 0.09 1.69 7.63 71.36 0.54 2.23 16 23 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 24 H 0.03 1.48 8.13 -2.39 -0.02 1.46 16 25 H 0.03 1.12 7.45 -2.39 -0.02 1.10 16 26 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 27 H 0.33 13.34 8.46 -89.69 -0.76 12.58 16 28 H 0.03 1.09 7.38 -2.39 -0.02 1.07 16 29 H 0.07 2.43 8.00 -2.38 -0.02 2.41 16 30 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 31 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 32 H 0.13 3.19 8.06 -2.91 -0.02 3.16 16 33 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.09 1.53 8.14 -2.39 -0.02 1.52 16 35 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -61.97 300.29 1.03 -60.94 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.31 Total: 19.13 kcal Atomic # 6 Polarization: -34.65 SS G_CDS: 3.30 Total: -31.35 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -2.86 Total: -84.65 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -1.75 Total: -10.04 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -61.97 1.03 -60.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381401008.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.099 kcal (2) G-P(sol) polarization free energy of solvation -61.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds