Wall clock time and date at job start Sun Mar 29 2020 23:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 115.56149 * 2 1 4 4 C 1.53002 * 117.50130 * 214.30229 * 2 1 3 5 5 C 1.53000 * 60.00202 * 252.51532 * 4 2 1 6 6 H 1.09003 * 117.49592 * 252.49276 * 5 4 2 7 7 C 1.52993 * 117.50342 * 107.48874 * 5 4 2 8 8 N 1.46503 * 109.46900 * 116.38729 * 7 5 4 9 9 C 1.39786 * 119.99746 * 180.02562 * 8 7 5 10 10 C 1.38954 * 120.00614 * 180.02562 * 9 8 7 11 11 C 1.38004 * 119.99424 * 179.97438 * 10 9 8 12 12 C 1.38896 * 120.00787 * 359.97438 * 11 10 9 13 13 O 1.35793 * 119.99421 * 180.02562 * 12 11 10 14 14 C 1.34811 * 117.00336 * 5.54334 * 13 12 11 15 15 H 1.08003 * 119.99959 * 354.94452 * 14 13 12 16 16 C 1.38619 * 120.00614 * 174.94144 * 14 13 12 17 17 N 1.31588 * 119.99712 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00287 * 180.27621 * 16 14 13 19 19 H 1.48503 * 109.47088 * 179.72244 * 18 16 14 20 20 H 1.48500 * 109.47345 * 299.72150 * 18 16 14 21 21 H 1.48503 * 109.47190 * 59.72372 * 18 16 14 22 22 C 1.38897 * 120.01007 * 0.27515 * 12 11 10 23 23 C 1.38010 * 120.00865 * 359.45241 * 22 12 11 24 24 H 1.09002 * 109.47117 * 274.31833 * 1 2 3 25 25 H 1.08991 * 109.47374 * 34.31719 * 1 2 3 26 26 H 1.08998 * 109.47276 * 154.32207 * 1 2 3 27 27 H 1.08997 * 117.50055 * 145.02008 * 4 2 1 28 28 H 1.09004 * 117.51244 * 359.97438 * 4 2 1 29 29 H 1.08999 * 109.47201 * 356.39225 * 7 5 4 30 30 H 1.08999 * 109.47456 * 236.38784 * 7 5 4 31 31 H 0.96991 * 120.00162 * 0.02562 * 8 7 5 32 32 H 1.08002 * 119.99877 * 359.97438 * 10 9 8 33 33 H 1.08001 * 119.99746 * 180.02562 * 11 10 9 34 34 H 0.96998 * 119.99929 * 180.02562 * 17 16 14 35 35 H 1.08002 * 119.99473 * 179.70454 * 22 12 11 36 36 H 1.07993 * 120.00415 * 180.25097 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1211 -0.7648 5 6 2.2364 -1.1210 0.7652 6 1 3.1716 -0.8754 1.2685 7 6 1.3588 -2.1560 1.4717 8 7 2.2058 -3.0702 2.2418 9 6 1.6259 -4.1083 2.9768 10 6 2.4290 -4.9752 3.7078 11 6 1.8562 -5.9996 4.4337 12 6 0.4770 -6.1638 4.4342 13 8 -0.0864 -7.1716 5.1490 14 6 0.7358 -7.9048 5.9261 15 1 1.8016 -7.7324 5.8979 16 6 0.2133 -8.8798 6.7615 17 7 -1.0853 -9.0894 6.7964 18 14 1.3519 -9.8903 7.8440 19 1 0.5509 -10.8534 8.6416 20 1 2.3145 -10.6336 6.9919 21 1 2.0953 -8.9875 8.7591 22 6 -0.3257 -5.3006 3.6995 23 6 0.2461 -4.2725 2.9778 24 1 -0.3633 0.0774 1.0248 25 1 -0.3634 0.8487 -0.5793 26 1 -0.3634 -0.9261 -0.4453 27 1 3.1716 -0.8753 -1.2681 28 1 1.6115 -1.8591 -1.2678 29 1 0.7948 -2.7213 0.7298 30 1 0.6674 -1.6480 2.1440 31 1 3.1688 -2.9552 2.2418 32 1 3.5014 -4.8472 3.7077 33 1 2.4803 -6.6732 5.0022 34 1 -1.4509 -9.7715 7.3812 35 1 -1.3978 -5.4315 3.6962 36 1 -0.3784 -3.5989 2.4099 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381459901.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:52 Heat of formation + Delta-G solvation = 1.338797 kcal Electronic energy + Delta-G solvation = -16854.844054 eV Core-core repulsion = 14111.503578 eV Total energy + Delta-G solvation = -2743.340476 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.73549 -39.44697 -38.31382 -35.33554 -34.03617 -31.83474 -30.04673 -29.00770 -27.59045 -26.23215 -23.75709 -22.43911 -22.24410 -20.57263 -19.62012 -18.85965 -17.63420 -17.15243 -16.34958 -16.07945 -15.49110 -15.40190 -15.22785 -14.89129 -14.57297 -14.24914 -14.06118 -13.87037 -13.41751 -13.31040 -12.96285 -12.93405 -12.58820 -12.38839 -12.30808 -12.12874 -11.97697 -11.11323 -11.07170 -10.79106 -10.71318 -10.12810 -9.77586 -8.38646 -7.93349 -6.02563 0.58398 0.93253 1.37157 1.48570 1.53476 2.23525 2.54972 2.91375 2.95169 3.25780 3.66869 3.73371 3.95699 3.98129 4.13799 4.18113 4.34723 4.47167 4.57241 4.62709 4.69515 4.82160 4.93390 4.95160 4.99015 5.01853 5.13092 5.20832 5.27089 5.29108 5.45308 5.48549 5.54717 5.78461 5.99246 6.11748 6.61528 7.04561 7.07670 7.93770 8.85762 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.060467 B = 0.003699 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.950382 B = 7568.093955 C = 7930.808394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.141 4.141 3 H 0.116 0.884 4 C -0.173 4.173 5 C -0.168 4.168 6 H 0.114 0.886 7 C 0.163 3.837 8 N -0.745 5.745 9 C 0.150 3.850 10 C -0.145 4.145 11 C -0.193 4.193 12 C 0.062 3.938 13 O -0.242 6.242 14 C -0.408 4.408 15 H 0.099 0.901 16 C -0.028 4.028 17 N -0.927 5.927 18 Si 1.017 2.983 19 H -0.273 1.273 20 H -0.258 1.258 21 H -0.258 1.258 22 C -0.156 4.156 23 C -0.147 4.147 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.403 0.597 32 H 0.140 0.860 33 H 0.120 0.880 34 H 0.270 0.730 35 H 0.113 0.887 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.277 16.795 -12.457 22.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.160 4.160 3 H 0.134 0.866 4 C -0.209 4.209 5 C -0.187 4.187 6 H 0.132 0.868 7 C 0.039 3.961 8 N -0.380 5.380 9 C 0.049 3.951 10 C -0.168 4.168 11 C -0.213 4.213 12 C 0.012 3.988 13 O -0.150 6.150 14 C -0.485 4.485 15 H 0.116 0.884 16 C -0.224 4.224 17 N -0.567 5.567 18 Si 0.837 3.163 19 H -0.198 1.198 20 H -0.182 1.182 21 H -0.183 1.183 22 C -0.175 4.175 23 C -0.169 4.169 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.122 0.878 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.239 0.761 32 H 0.158 0.842 33 H 0.138 0.862 34 H 0.079 0.921 35 H 0.131 0.869 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.744 16.704 -12.444 22.223 hybrid contribution 0.472 -0.736 0.651 1.089 sum 8.216 15.968 -11.794 21.484 Atomic orbital electron populations 1.21415 0.92619 1.02460 1.02169 1.22458 0.95732 0.94564 1.03219 0.86589 1.23263 1.03063 1.01487 0.93136 1.22446 1.01588 1.00056 0.94584 0.86773 1.20743 0.92591 0.89302 0.93486 1.44310 1.08537 1.31288 1.53845 1.17554 0.91767 0.90799 0.94960 1.20507 0.99722 0.96147 1.00383 1.21062 0.93886 1.01667 1.04647 1.19732 0.92914 0.90671 0.95469 1.83931 1.37341 1.39838 1.53935 1.21734 0.90945 1.15717 1.20077 0.88412 1.26541 0.98424 0.98662 0.98822 1.70203 1.13290 1.33826 1.39392 0.84670 0.76856 0.77394 0.77415 1.19785 1.18212 1.18275 1.20227 0.99004 0.96710 1.01596 1.20424 0.93477 0.99605 1.03412 0.92209 0.91033 0.92669 0.87755 0.88949 0.93067 0.92754 0.76145 0.84213 0.86214 0.92131 0.86873 0.84225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 9.19 71.98 0.66 -1.01 16 2 C -0.14 -1.83 6.41 -10.79 -0.07 -1.90 16 3 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 4 C -0.17 -2.33 9.82 30.59 0.30 -2.03 16 5 C -0.17 -2.56 5.85 -10.79 -0.06 -2.63 16 6 H 0.11 1.59 8.04 -2.39 -0.02 1.57 16 7 C 0.16 3.28 4.27 86.38 0.37 3.65 16 8 N -0.74 -18.03 5.74 -339.26 -1.95 -19.97 16 9 C 0.15 4.95 6.66 38.21 0.25 5.20 16 10 C -0.15 -5.20 9.89 22.39 0.22 -4.98 16 11 C -0.19 -8.70 9.16 22.37 0.20 -8.50 16 12 C 0.06 3.20 6.65 22.59 0.15 3.35 16 13 O -0.24 -15.16 9.76 -23.02 -0.22 -15.39 16 14 C -0.41 -24.60 9.48 67.91 0.64 -23.95 16 15 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 16 C -0.03 -1.67 5.49 84.82 0.47 -1.20 16 17 N -0.93 -58.79 13.67 21.61 0.30 -58.49 16 18 Si 1.02 44.19 29.55 68.60 2.03 46.22 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 20 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 21 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 22 C -0.16 -6.94 9.98 22.37 0.22 -6.72 16 23 C -0.15 -5.25 9.30 22.39 0.21 -5.04 16 24 H 0.06 0.82 7.83 -2.39 -0.02 0.80 16 25 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.05 0.75 7.90 -2.39 -0.02 0.73 16 27 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.09 1.34 7.94 -2.38 -0.02 1.32 16 29 H 0.05 1.08 7.68 -2.39 -0.02 1.06 16 30 H 0.05 1.15 7.57 -2.39 -0.02 1.13 16 31 H 0.40 8.13 8.41 -92.72 -0.78 7.35 16 32 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 33 H 0.12 5.46 5.63 -2.91 -0.02 5.44 16 34 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 35 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 36 H 0.14 4.10 6.73 -2.91 -0.02 4.08 16 Total: -1.00 -71.87 303.98 4.03 -67.85 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.30 Total: 25.53 kcal Atomic # 6 Polarization: -49.32 SS G_CDS: 3.57 Total: -45.75 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -1.65 Total: -78.47 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.22 Total: -15.39 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -71.87 4.03 -67.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381459901.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.186 kcal (2) G-P(sol) polarization free energy of solvation -71.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds