Wall clock time and date at job start Sun Mar 29 2020 22:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47390 * 39.21110 * 3 2 1 5 5 C 1.36817 * 119.99956 * 96.45582 * 4 3 2 6 6 H 1.07999 * 120.00011 * 156.74921 * 5 4 3 7 7 C 1.39072 * 119.99825 * 336.74801 * 5 4 3 8 8 N 1.31350 * 120.00517 * 5.29890 * 7 5 4 9 9 Si 1.86803 * 119.99869 * 185.29501 * 7 5 4 10 10 H 1.48502 * 109.46910 * 60.00190 * 9 7 5 11 11 H 1.48498 * 109.47243 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47059 * 300.00481 * 9 7 5 13 13 C 1.34772 * 120.00117 * 276.45589 * 4 3 2 14 14 O 1.21655 * 120.00612 * 179.97438 * 13 4 3 15 15 C 1.46960 * 119.99909 * 0.02562 * 13 4 3 16 16 C 1.33128 * 119.99835 * 186.33010 * 15 13 4 17 17 C 1.50696 * 119.99851 * 17.58058 * 16 15 13 18 18 C 1.54276 * 110.02840 * 249.21344 * 17 16 15 19 19 C 1.54891 * 104.19460 * 217.10691 * 18 17 16 20 20 C 1.54896 * 102.74768 * 37.94533 * 19 18 17 21 21 C 1.53879 * 110.03148 * 132.05308 * 17 16 15 22 22 H 4.40642 * 5.51446 * 180.02562 * 4 1 2 23 23 H 1.09000 * 109.46913 * 279.20458 * 3 2 1 24 24 H 1.08999 * 109.47048 * 159.21342 * 3 2 1 25 25 H 0.96993 * 120.00444 * 179.97438 * 8 7 5 26 26 H 1.07995 * 119.99594 * 6.32304 * 15 13 4 27 27 H 1.07997 * 119.99649 * 197.57887 * 16 15 13 28 28 H 1.08998 * 110.02309 * 10.65723 * 17 16 15 29 29 H 1.09002 * 110.48409 * 335.78479 * 18 17 16 30 30 H 1.09000 * 110.48000 * 98.42937 * 18 17 16 31 31 H 1.08992 * 110.75663 * 279.62793 * 19 18 17 32 32 H 1.08996 * 110.75258 * 156.25782 * 19 18 17 33 33 H 1.09000 * 110.48092 * 203.38126 * 20 19 18 34 34 H 1.08995 * 110.59498 * 80.79074 * 20 19 18 35 35 H 1.09000 * 110.02897 * 238.56554 * 21 17 16 36 36 H 1.08999 * 110.03027 * 359.94578 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0693 -0.8732 5 6 3.4884 -0.7901 -2.1650 6 1 4.1767 -1.4372 -2.6884 7 6 2.9614 0.3269 -2.8043 8 7 2.2073 1.1706 -2.1373 9 14 3.3259 0.6275 -4.6116 10 1 2.8232 -0.5160 -5.4147 11 1 2.6516 1.8752 -5.0517 12 1 4.7922 0.7617 -4.8051 13 6 3.2364 -2.3286 -0.4039 14 8 3.6419 -3.2172 -1.1290 15 6 2.8561 -2.6285 0.9836 16 6 3.0737 -3.8421 1.4859 17 6 4.0428 -4.7756 0.8075 18 6 3.2808 -5.9552 0.1687 19 6 4.2130 -7.1727 0.3875 20 6 4.7918 -6.9105 1.8001 21 6 5.0035 -5.3831 1.8447 22 1 -1.0498 -0.0002 -0.0004 23 1 3.0094 -0.1636 1.0144 24 1 3.0089 0.9616 -0.3647 25 1 1.8401 1.9498 -2.5830 26 1 2.4002 -1.8645 1.5957 27 1 2.5559 -4.1573 2.3797 28 1 4.6072 -4.2384 0.0454 29 1 2.3264 -6.1102 0.6721 30 1 3.1275 -5.7785 -0.8959 31 1 5.0075 -7.1897 -0.3585 32 1 3.6447 -8.1025 0.3694 33 1 5.7412 -7.4310 1.9259 34 1 4.0832 -7.2201 2.5683 35 1 6.0342 -5.1412 1.5855 36 1 4.7694 -5.0019 2.8387 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491740735.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:55 Heat of formation + Delta-G solvation = 45.467209 kcal Electronic energy + Delta-G solvation = -17846.707027 eV Core-core repulsion = 15105.280102 eV Total energy + Delta-G solvation = -2741.426924 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.98413 -37.59349 -35.20356 -32.61517 -31.89999 -31.21127 -28.31623 -27.72835 -26.45212 -24.70393 -21.76471 -20.32864 -19.65545 -18.24143 -17.70954 -16.61062 -16.21609 -15.29947 -14.97079 -14.29796 -14.09111 -13.80687 -13.14956 -13.02831 -12.64802 -12.38693 -12.24843 -11.89524 -11.30902 -11.21487 -11.08988 -10.87082 -10.68296 -10.61738 -10.40505 -10.38218 -10.24932 -10.05369 -9.47325 -9.26036 -8.78817 -8.48467 -8.07955 -7.80841 -6.30087 -3.91101 2.14625 3.20245 3.23923 3.27855 3.77967 4.02235 4.16995 4.39892 4.97851 5.02242 5.02649 5.10024 5.17010 5.51182 5.57116 5.75784 5.77805 5.90763 5.93996 6.07716 6.08044 6.15864 6.17494 6.30022 6.38888 6.41972 6.57133 6.76598 6.93886 6.96997 7.03078 7.15138 7.35195 7.51955 8.12104 8.47705 8.79413 9.14477 9.36249 9.96303 10.65064 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.027608 B = 0.006244 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.954801 B = 4482.982523 C = 5137.862506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.107 4.107 3 C 0.220 3.780 4 N -0.435 5.435 5 C -0.301 4.301 6 H 0.102 0.898 7 C 0.030 3.970 8 N -0.875 5.875 9 Si 0.930 3.070 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.476 3.524 14 O -0.577 6.577 15 C -0.192 4.192 16 C -0.096 4.096 17 C -0.081 4.081 18 C -0.104 4.104 19 C -0.126 4.126 20 C -0.123 4.123 21 C -0.119 4.119 22 H 0.199 0.801 23 H 0.055 0.945 24 H 0.137 0.863 25 H 0.270 0.730 26 H 0.114 0.886 27 H 0.107 0.893 28 H 0.121 0.879 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.523 -6.643 7.621 10.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.108 4.108 3 C 0.097 3.903 4 N -0.152 5.152 5 C -0.428 4.428 6 H 0.120 0.880 7 C -0.173 4.173 8 N -0.515 5.515 9 Si 0.756 3.244 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.268 3.732 14 O -0.464 6.464 15 C -0.213 4.213 16 C -0.117 4.117 17 C -0.099 4.099 18 C -0.141 4.141 19 C -0.163 4.163 20 C -0.161 4.161 21 C -0.156 4.156 22 H 0.216 0.784 23 H 0.073 0.927 24 H 0.154 0.846 25 H 0.081 0.919 26 H 0.131 0.869 27 H 0.125 0.875 28 H 0.138 0.862 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.660 -6.832 7.177 10.047 hybrid contribution -0.504 0.483 -0.744 1.020 sum 1.156 -6.349 6.433 9.112 Atomic orbital electron populations 1.24314 0.95456 1.04229 1.05422 1.23443 0.94559 0.96945 0.95871 1.18700 0.83881 0.95832 0.91860 1.43613 1.55035 1.05074 1.11483 1.19656 1.24912 1.10163 0.88111 0.87982 1.25423 0.95487 0.96219 1.00150 1.69856 1.32761 1.12950 1.35896 0.85945 0.78566 0.77632 0.82246 1.19877 1.20937 1.19825 1.18308 0.84489 0.82570 0.87870 1.90503 1.51523 1.44666 1.59721 1.22908 1.04544 0.97725 0.96122 1.23417 0.95475 0.94390 0.98435 1.21377 0.95432 0.95601 0.97524 1.22220 0.97289 0.93078 1.01560 1.22513 0.99127 0.97986 0.96690 1.22356 1.00059 0.96330 0.97324 1.22252 0.99475 0.94725 0.99169 0.78410 0.92691 0.84567 0.91940 0.86850 0.87488 0.86164 0.92772 0.90932 0.91691 0.92338 0.92409 0.92188 0.92165 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -5.81 19.25 29.55 0.57 -5.24 16 2 C -0.11 -2.44 11.39 -37.12 -0.42 -2.86 16 3 C 0.22 5.00 4.78 -6.83 -0.03 4.97 16 4 N -0.44 -11.10 2.60 -119.34 -0.31 -11.41 16 5 C -0.30 -8.21 9.30 -15.02 -0.14 -8.35 16 6 H 0.10 2.89 7.40 -52.49 -0.39 2.50 16 7 C 0.03 0.78 5.38 -17.45 -0.09 0.69 16 8 N -0.88 -22.68 8.71 55.50 0.48 -22.20 16 9 Si 0.93 20.69 29.56 -169.99 -5.02 15.66 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 13 C 0.48 11.64 7.28 -12.73 -0.09 11.55 16 14 O -0.58 -15.31 12.70 5.23 0.07 -15.25 16 15 C -0.19 -3.81 8.99 -37.83 -0.34 -4.15 16 16 C -0.10 -1.67 8.44 -36.09 -0.30 -1.97 16 17 C -0.08 -1.41 2.36 -90.65 -0.21 -1.62 16 18 C -0.10 -1.70 6.21 -25.07 -0.16 -1.85 16 19 C -0.13 -1.68 6.91 -24.73 -0.17 -1.85 16 20 C -0.12 -1.50 6.83 -25.07 -0.17 -1.67 16 21 C -0.12 -1.66 6.45 -25.61 -0.17 -1.82 16 22 H 0.20 3.39 7.80 -54.10 -0.42 2.97 16 23 H 0.06 1.07 6.58 -51.93 -0.34 0.73 16 24 H 0.14 3.29 5.93 -51.93 -0.31 2.98 16 25 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 26 H 0.11 2.07 6.24 -52.49 -0.33 1.74 16 27 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.12 2.54 5.22 -51.93 -0.27 2.27 16 29 H 0.05 0.84 7.85 -51.93 -0.41 0.43 16 30 H 0.07 1.36 7.84 -51.93 -0.41 0.95 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.75 7.67 -51.93 -0.40 0.36 16 LS Contribution 298.03 15.07 4.49 4.49 Total: -1.00 -29.07 298.03 -6.97 -36.04 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -4.94 Total: 6.86 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -1.73 Total: -14.20 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.17 Total: -33.61 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.07 Total: -15.25 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.07 -6.97 -36.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491740735.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.510 kcal (2) G-P(sol) polarization free energy of solvation -29.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds