Wall clock time and date at job start Sun Mar 29 2020 22:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47390 * 39.21110 * 3 2 1 5 5 C 1.36817 * 119.99956 * 96.45582 * 4 3 2 6 6 H 1.07999 * 120.00011 * 156.74921 * 5 4 3 7 7 C 1.39072 * 119.99825 * 336.74801 * 5 4 3 8 8 N 1.31350 * 120.00517 * 5.29890 * 7 5 4 9 9 Si 1.86803 * 119.99869 * 185.29501 * 7 5 4 10 10 H 1.48502 * 109.46910 * 60.00190 * 9 7 5 11 11 H 1.48498 * 109.47243 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47059 * 300.00481 * 9 7 5 13 13 C 1.34772 * 120.00117 * 276.45589 * 4 3 2 14 14 O 1.21655 * 120.00612 * 179.97438 * 13 4 3 15 15 C 1.46960 * 119.99909 * 0.02562 * 13 4 3 16 16 C 1.33128 * 119.99835 * 186.33010 * 15 13 4 17 17 C 1.50696 * 119.99851 * 17.58058 * 16 15 13 18 18 C 1.54276 * 110.02840 * 249.21344 * 17 16 15 19 19 C 1.54891 * 104.19460 * 217.10691 * 18 17 16 20 20 C 1.54896 * 102.74768 * 37.94533 * 19 18 17 21 21 C 1.53879 * 110.03148 * 132.05308 * 17 16 15 22 22 H 4.40642 * 5.51446 * 180.02562 * 4 1 2 23 23 H 1.09000 * 109.46913 * 279.20458 * 3 2 1 24 24 H 1.08999 * 109.47048 * 159.21342 * 3 2 1 25 25 H 0.96993 * 120.00444 * 179.97438 * 8 7 5 26 26 H 1.07995 * 119.99594 * 6.32304 * 15 13 4 27 27 H 1.07997 * 119.99649 * 197.57887 * 16 15 13 28 28 H 1.08998 * 110.02309 * 10.65723 * 17 16 15 29 29 H 1.09002 * 110.48409 * 335.78479 * 18 17 16 30 30 H 1.09000 * 110.48000 * 98.42937 * 18 17 16 31 31 H 1.08992 * 110.75663 * 279.62793 * 19 18 17 32 32 H 1.08996 * 110.75258 * 156.25782 * 19 18 17 33 33 H 1.09000 * 110.48092 * 203.38126 * 20 19 18 34 34 H 1.08995 * 110.59498 * 80.79074 * 20 19 18 35 35 H 1.09000 * 110.02897 * 238.56554 * 21 17 16 36 36 H 1.08999 * 110.03027 * 359.94578 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0693 -0.8732 5 6 3.4884 -0.7901 -2.1650 6 1 4.1767 -1.4372 -2.6884 7 6 2.9614 0.3269 -2.8043 8 7 2.2073 1.1706 -2.1373 9 14 3.3259 0.6275 -4.6116 10 1 2.8232 -0.5160 -5.4147 11 1 2.6516 1.8752 -5.0517 12 1 4.7922 0.7617 -4.8051 13 6 3.2364 -2.3286 -0.4039 14 8 3.6419 -3.2172 -1.1290 15 6 2.8561 -2.6285 0.9836 16 6 3.0737 -3.8421 1.4859 17 6 4.0428 -4.7756 0.8075 18 6 3.2808 -5.9552 0.1687 19 6 4.2130 -7.1727 0.3875 20 6 4.7918 -6.9105 1.8001 21 6 5.0035 -5.3831 1.8447 22 1 -1.0498 -0.0002 -0.0004 23 1 3.0094 -0.1636 1.0144 24 1 3.0089 0.9616 -0.3647 25 1 1.8401 1.9498 -2.5830 26 1 2.4002 -1.8645 1.5957 27 1 2.5559 -4.1573 2.3797 28 1 4.6072 -4.2384 0.0454 29 1 2.3264 -6.1102 0.6721 30 1 3.1275 -5.7785 -0.8959 31 1 5.0075 -7.1897 -0.3585 32 1 3.6447 -8.1025 0.3694 33 1 5.7412 -7.4310 1.9259 34 1 4.0832 -7.2201 2.5683 35 1 6.0342 -5.1412 1.5855 36 1 4.7694 -5.0019 2.8387 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491740735.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:54 Heat of formation + Delta-G solvation = 30.404557 kcal Electronic energy + Delta-G solvation = -17847.360193 eV Core-core repulsion = 15105.280102 eV Total energy + Delta-G solvation = -2742.080090 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.71838 -38.96748 -37.03942 -34.26675 -33.60484 -33.03446 -29.47933 -29.12979 -28.22067 -26.53481 -23.40928 -21.43241 -21.01610 -19.92068 -19.53802 -18.35433 -17.97623 -16.67134 -16.47581 -15.97660 -15.85024 -15.41197 -14.63343 -14.34004 -14.15839 -14.08130 -13.96902 -13.41409 -13.13123 -12.95529 -12.57008 -12.50789 -12.16013 -11.90284 -11.84784 -11.61642 -11.53502 -11.38202 -11.27184 -11.04033 -10.58455 -10.09836 -9.81271 -9.72707 -8.25749 -5.95989 0.60749 1.38850 1.42578 1.49307 2.04229 2.27582 2.35584 2.57662 3.15668 3.32519 3.84453 3.87441 3.89401 3.93546 4.21887 4.33347 4.61891 4.63914 4.74540 4.76505 4.86122 4.87050 4.92285 5.08115 5.15346 5.19025 5.23330 5.41502 5.44182 5.45874 5.51829 5.55625 5.59337 5.87913 6.18219 6.53175 7.09631 7.17219 7.45920 8.05999 8.66197 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.027608 B = 0.006244 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.954801 B = 4482.982523 C = 5137.862506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.150 4.150 3 C 0.225 3.775 4 N -0.453 5.453 5 C -0.338 4.338 6 H 0.075 0.925 7 C 0.000 4.000 8 N -0.882 5.882 9 Si 0.987 3.013 10 H -0.283 1.283 11 H -0.270 1.270 12 H -0.266 1.266 13 C 0.466 3.534 14 O -0.612 6.612 15 C -0.222 4.222 16 C -0.061 4.061 17 C -0.092 4.092 18 C -0.105 4.105 19 C -0.122 4.122 20 C -0.114 4.114 21 C -0.114 4.114 22 H 0.235 0.765 23 H 0.083 0.917 24 H 0.117 0.883 25 H 0.272 0.728 26 H 0.132 0.868 27 H 0.152 0.848 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.033 0.967 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.700 -7.660 9.514 12.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.151 4.151 3 C 0.103 3.897 4 N -0.170 5.170 5 C -0.466 4.466 6 H 0.093 0.907 7 C -0.202 4.202 8 N -0.521 5.521 9 Si 0.811 3.189 10 H -0.209 1.209 11 H -0.195 1.195 12 H -0.191 1.191 13 C 0.260 3.740 14 O -0.501 6.501 15 C -0.243 4.243 16 C -0.081 4.081 17 C -0.110 4.110 18 C -0.142 4.142 19 C -0.159 4.159 20 C -0.152 4.152 21 C -0.152 4.152 22 H 0.251 0.749 23 H 0.101 0.899 24 H 0.135 0.865 25 H 0.082 0.918 26 H 0.150 0.850 27 H 0.170 0.830 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.837 -7.829 9.096 12.031 hybrid contribution -0.253 0.703 -1.293 1.493 sum 0.584 -7.126 7.803 10.584 Atomic orbital electron populations 1.25204 0.96423 1.02329 1.03618 1.23695 0.95178 0.98679 0.97563 1.18625 0.84387 0.94123 0.92596 1.43789 1.55722 1.06154 1.11312 1.19568 1.26361 1.10996 0.89703 0.90670 1.26065 0.95153 0.95543 1.03465 1.69986 1.32568 1.12771 1.36752 0.85089 0.78766 0.77390 0.77622 1.20900 1.19454 1.19117 1.19127 0.83196 0.81965 0.89736 1.90493 1.52736 1.45598 1.61278 1.22766 1.07567 0.99660 0.94293 1.23920 0.92889 0.92743 0.98582 1.21350 0.95978 0.95865 0.97796 1.22181 0.98618 0.94278 0.99159 1.22503 0.98456 0.97370 0.97615 1.22343 1.01486 0.94729 0.96608 1.22215 0.98118 0.96130 0.98692 0.74863 0.89880 0.86527 0.91801 0.85043 0.83039 0.90737 0.91464 0.94783 0.92616 0.90186 0.90566 0.90145 0.92600 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.44 19.25 74.32 1.43 -9.01 16 2 C -0.15 -6.80 11.39 31.13 0.35 -6.45 16 3 C 0.22 10.41 4.78 84.57 0.40 10.82 16 4 N -0.45 -24.01 2.60 -649.70 -1.69 -25.70 16 5 C -0.34 -19.42 9.30 84.12 0.78 -18.64 16 6 H 0.08 4.58 7.40 -2.91 -0.02 4.55 16 7 C 0.00 -0.03 5.38 84.97 0.46 0.43 16 8 N -0.88 -46.31 8.71 21.68 0.19 -46.12 16 9 Si 0.99 43.30 29.56 68.60 2.03 45.33 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 11 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 12 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 13 C 0.47 23.72 7.28 86.53 0.63 24.35 16 14 O -0.61 -34.47 12.70 -4.21 -0.05 -34.53 16 15 C -0.22 -8.72 8.99 23.41 0.21 -8.51 16 16 C -0.06 -1.99 8.44 24.54 0.21 -1.79 16 17 C -0.09 -3.11 2.36 -10.81 -0.03 -3.14 16 18 C -0.10 -3.36 6.21 31.67 0.20 -3.16 16 19 C -0.12 -3.02 6.91 31.89 0.22 -2.79 16 20 C -0.11 -2.36 6.83 31.67 0.22 -2.15 16 21 C -0.11 -2.90 6.45 31.32 0.20 -2.69 16 22 H 0.23 7.28 7.80 -4.43 -0.03 7.24 16 23 H 0.08 3.25 6.58 -2.39 -0.02 3.23 16 24 H 0.12 5.81 5.93 -2.39 -0.01 5.79 16 25 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 26 H 0.13 4.61 6.24 -2.91 -0.02 4.60 16 27 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 28 H 0.07 3.30 5.22 -2.39 -0.01 3.29 16 29 H 0.07 1.95 7.85 -2.39 -0.02 1.93 16 30 H 0.03 1.33 7.84 -2.39 -0.02 1.31 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.69 7.67 -2.39 -0.02 1.68 16 Total: -1.00 -66.43 298.03 6.82 -59.62 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 1.06 Total: 24.13 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: 5.29 Total: -22.73 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -1.50 Total: -71.82 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.05 Total: -34.53 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -66.43 6.82 -59.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491740735.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.021 kcal (2) G-P(sol) polarization free energy of solvation -66.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds