Wall clock time and date at job start Sun Mar 29 2020 22:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 119.99948 * 2 1 4 4 C 1.50701 * 120.00112 * 179.97438 * 2 1 3 5 5 O 1.42903 * 109.46878 * 0.02562 * 4 2 1 6 6 C 1.35904 * 116.99628 * 179.97438 * 5 4 2 7 7 C 1.38814 * 120.01726 * 359.73024 * 6 5 4 8 8 C 1.38180 * 120.08689 * 179.71715 * 7 6 5 9 9 C 1.38150 * 120.12815 * 0.55613 * 8 7 6 10 10 C 1.38932 * 120.03989 * 359.72113 * 9 8 7 11 11 N 1.39661 * 120.04684 * 180.02562 * 10 9 8 12 12 C 1.46498 * 120.00190 * 359.97335 * 11 10 9 13 13 C 1.50709 * 109.47040 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00043 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99713 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00244 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99719 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47519 * 89.99866 * 17 15 13 19 19 H 1.48498 * 109.47100 * 209.99952 * 17 15 13 20 20 H 1.48500 * 109.46921 * 329.99684 * 17 15 13 21 21 C 1.38573 * 120.01719 * 180.02562 * 6 5 4 22 22 H 1.07994 * 120.00175 * 359.97438 * 1 2 3 23 23 H 1.08002 * 119.99900 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46709 * 269.99678 * 3 2 1 25 25 H 1.08994 * 109.47494 * 29.99540 * 3 2 1 26 26 H 1.09004 * 109.47456 * 150.00318 * 3 2 1 27 27 H 1.09002 * 109.47060 * 120.00135 * 4 2 1 28 28 H 1.09001 * 109.47380 * 240.00223 * 4 2 1 29 29 H 1.07996 * 119.95703 * 359.97438 * 7 6 5 30 30 H 1.08000 * 119.92938 * 180.27062 * 8 7 6 31 31 H 1.08005 * 119.97695 * 179.74294 * 9 8 7 32 32 H 0.97008 * 119.99785 * 179.97438 * 11 10 9 33 33 H 1.09001 * 109.47014 * 299.99841 * 12 11 10 34 34 H 1.08997 * 109.47011 * 60.00475 * 12 11 10 35 35 H 0.96998 * 119.99713 * 180.02562 * 16 15 13 36 36 H 1.08004 * 120.06059 * 359.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 8 1.1349 -2.3913 0.0005 6 6 1.6544 -3.6471 0.0004 7 6 3.0305 -3.8293 -0.0052 8 6 3.5603 -5.1055 0.0006 9 6 2.7226 -6.2041 0.0005 10 6 1.3445 -6.0279 0.0003 11 7 0.4975 -7.1383 0.0006 12 6 1.0620 -8.4902 0.0006 13 6 -0.0556 -9.5012 0.0004 14 1 -1.0835 -9.1699 -0.0001 15 6 0.2343 -10.8492 0.0009 16 7 1.4860 -11.2526 0.0021 17 14 -1.1510 -12.1024 0.0000 18 1 -1.5169 -12.4348 -1.4004 19 1 -0.7052 -13.3335 0.7006 20 1 -2.3320 -11.5352 0.6989 21 6 0.8106 -4.7463 -0.0002 22 1 -0.5400 0.9352 0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 2.2451 1.6197 -1.0277 25 1 1.4744 2.0648 0.5137 26 1 3.0159 1.1748 0.5138 27 1 2.6902 -1.3632 -0.8894 28 1 2.6902 -1.3625 0.8906 29 1 3.6879 -2.9725 -0.0099 30 1 4.6313 -5.2443 0.0007 31 1 3.1393 -7.2005 0.0008 32 1 -0.4647 -7.0144 0.0009 33 1 1.6759 -8.6275 -0.8895 34 1 1.6763 -8.6273 0.8905 35 1 1.6899 -12.2010 0.0021 36 1 -0.2603 -4.6063 -0.0003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567702062.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:01 Heat of formation + Delta-G solvation = -4.042971 kcal Electronic energy + Delta-G solvation = -16727.839679 eV Core-core repulsion = 13984.265832 eV Total energy + Delta-G solvation = -2743.573847 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.82803 -37.83994 -35.46621 -34.40561 -32.56297 -30.16007 -28.72772 -27.38714 -27.03545 -26.06188 -22.95891 -21.99655 -20.62310 -18.63302 -17.84345 -16.79509 -15.89903 -15.85223 -15.37847 -14.96115 -14.90462 -14.26575 -13.67140 -13.62243 -13.15841 -13.06962 -13.05388 -12.48345 -12.09607 -12.07747 -11.77684 -11.32688 -11.10743 -11.07930 -10.86808 -10.80277 -10.47998 -10.18943 -9.40789 -9.38637 -9.19442 -8.56884 -7.86036 -6.62228 -6.22118 -4.27388 1.98068 2.05416 2.17668 3.22529 3.25472 3.29024 3.32202 4.25390 4.41705 4.54746 4.65388 4.94698 5.14242 5.15192 5.17577 5.23969 5.35860 5.42359 5.55382 5.66511 5.81684 5.90417 5.92680 6.06622 6.37143 6.44425 6.63946 6.79960 6.90867 6.99053 7.10969 7.23365 7.41175 7.60777 7.81195 7.93660 8.26909 8.64433 8.88330 9.39018 10.88510 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.051387 B = 0.003592 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.756470 B = 7792.275040 C = 8311.281386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.146 4.146 3 C -0.112 4.112 4 C 0.099 3.901 5 O -0.317 6.317 6 C 0.170 3.830 7 C -0.289 4.289 8 C -0.035 4.035 9 C -0.232 4.232 10 C 0.266 3.734 11 N -0.724 5.724 12 C 0.250 3.750 13 C -0.540 4.540 14 H 0.063 0.937 15 C 0.064 3.936 16 N -0.889 5.889 17 Si 0.904 3.096 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.249 4.249 22 H 0.097 0.903 23 H 0.111 0.889 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.126 0.874 32 H 0.392 0.608 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.266 0.734 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.284 19.454 -0.015 19.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C -0.169 4.169 4 C 0.024 3.976 5 O -0.231 6.231 6 C 0.124 3.876 7 C -0.310 4.310 8 C -0.055 4.055 9 C -0.256 4.256 10 C 0.155 3.845 11 N -0.345 5.345 12 C 0.129 3.871 13 C -0.578 4.578 14 H 0.081 0.919 15 C -0.140 4.140 16 N -0.527 5.527 17 Si 0.731 3.269 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.273 4.273 22 H 0.115 0.885 23 H 0.129 0.871 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.144 0.856 32 H 0.226 0.774 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.076 0.924 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.277 19.080 -0.008 19.216 hybrid contribution -0.772 -0.729 -0.015 1.062 sum 1.504 18.352 -0.023 18.413 Atomic orbital electron populations 1.23770 0.95451 1.02399 0.99143 1.21586 0.95986 0.94060 1.03022 1.20741 1.00149 0.93683 1.02302 1.21403 0.91057 0.83556 1.01601 1.85947 1.35621 1.12478 1.89095 1.18488 0.91664 0.82949 0.94455 1.20719 0.93216 0.97948 1.19124 1.20571 0.98750 0.91510 0.94623 1.20689 0.91688 0.99537 1.13638 1.17689 0.90669 0.86822 0.89284 1.45559 1.07346 1.04766 1.76877 1.19146 0.94996 0.76164 0.96771 1.21206 0.92845 0.90965 1.52809 0.91935 1.24930 0.95981 0.98436 0.94628 1.69945 1.17475 1.15983 1.49268 0.86401 0.81737 0.80465 0.78269 1.20426 1.20963 1.19730 1.19585 0.98996 0.89121 1.19609 0.88503 0.87070 0.91315 0.91403 0.91749 0.91215 0.91206 0.86840 0.86604 0.85636 0.77423 0.95998 0.95980 0.92437 0.86202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 13.66 29.02 0.40 -1.38 16 2 C -0.15 -1.48 6.05 -101.07 -0.61 -2.09 16 3 C -0.11 -0.80 10.03 36.00 0.36 -0.44 16 4 C 0.10 1.14 5.14 36.01 0.19 1.33 16 5 O -0.32 -4.78 8.53 -19.44 -0.17 -4.94 16 6 C 0.17 2.85 6.68 -39.25 -0.26 2.58 16 7 C -0.29 -4.50 9.04 -39.39 -0.36 -4.85 16 8 C -0.04 -0.58 10.03 -39.63 -0.40 -0.98 16 9 C -0.23 -4.49 9.31 -39.36 -0.37 -4.86 16 10 C 0.27 5.34 6.65 -83.82 -0.56 4.78 16 11 N -0.72 -15.69 5.72 -59.83 -0.34 -16.03 16 12 C 0.25 6.38 4.66 -5.19 -0.02 6.36 16 13 C -0.54 -14.67 9.28 -34.44 -0.32 -14.99 16 14 H 0.06 1.63 7.60 -52.49 -0.40 1.24 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -25.55 13.29 55.43 0.74 -24.82 16 17 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 21 C -0.25 -4.53 9.83 -39.24 -0.39 -4.92 16 22 H 0.10 0.81 8.04 -52.49 -0.42 0.39 16 23 H 0.11 1.34 6.84 -52.49 -0.36 0.98 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.42 8.06 -51.93 -0.42 0.01 16 26 H 0.06 0.41 8.12 -51.93 -0.42 -0.02 16 27 H 0.07 0.74 7.65 -51.93 -0.40 0.35 16 28 H 0.07 0.74 7.67 -51.93 -0.40 0.35 16 29 H 0.11 1.45 6.29 -52.49 -0.33 1.12 16 30 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 31 H 0.13 2.55 6.73 -52.48 -0.35 2.20 16 32 H 0.39 7.93 8.33 -40.82 -0.34 7.59 16 33 H 0.02 0.60 7.95 -51.93 -0.41 0.19 16 34 H 0.02 0.61 7.95 -51.93 -0.41 0.19 16 35 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.12 2.05 8.06 -52.48 -0.42 1.63 16 LS Contribution 308.01 15.07 4.64 4.64 Total: -1.00 -29.06 308.01 -7.65 -36.71 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.07 Total: 6.37 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -2.44 Total: -17.82 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.39 Total: -40.85 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.17 Total: -4.94 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.06 -7.65 -36.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567702062.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.668 kcal (2) G-P(sol) polarization free energy of solvation -29.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds