Wall clock time and date at job start Sun Mar 29 2020 22:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 119.99948 * 2 1 4 4 C 1.50701 * 120.00112 * 179.97438 * 2 1 3 5 5 O 1.42903 * 109.46878 * 0.02562 * 4 2 1 6 6 C 1.35904 * 116.99628 * 179.97438 * 5 4 2 7 7 C 1.38814 * 120.01726 * 359.73024 * 6 5 4 8 8 C 1.38180 * 120.08689 * 179.71715 * 7 6 5 9 9 C 1.38150 * 120.12815 * 0.55613 * 8 7 6 10 10 C 1.38932 * 120.03989 * 359.72113 * 9 8 7 11 11 N 1.39661 * 120.04684 * 180.02562 * 10 9 8 12 12 C 1.46498 * 120.00190 * 359.97335 * 11 10 9 13 13 C 1.50709 * 109.47040 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00043 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99713 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00244 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99719 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47519 * 89.99866 * 17 15 13 19 19 H 1.48498 * 109.47100 * 209.99952 * 17 15 13 20 20 H 1.48500 * 109.46921 * 329.99684 * 17 15 13 21 21 C 1.38573 * 120.01719 * 180.02562 * 6 5 4 22 22 H 1.07994 * 120.00175 * 359.97438 * 1 2 3 23 23 H 1.08002 * 119.99900 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46709 * 269.99678 * 3 2 1 25 25 H 1.08994 * 109.47494 * 29.99540 * 3 2 1 26 26 H 1.09004 * 109.47456 * 150.00318 * 3 2 1 27 27 H 1.09002 * 109.47060 * 120.00135 * 4 2 1 28 28 H 1.09001 * 109.47380 * 240.00223 * 4 2 1 29 29 H 1.07996 * 119.95703 * 359.97438 * 7 6 5 30 30 H 1.08000 * 119.92938 * 180.27062 * 8 7 6 31 31 H 1.08005 * 119.97695 * 179.74294 * 9 8 7 32 32 H 0.97008 * 119.99785 * 179.97438 * 11 10 9 33 33 H 1.09001 * 109.47014 * 299.99841 * 12 11 10 34 34 H 1.08997 * 109.47011 * 60.00475 * 12 11 10 35 35 H 0.96998 * 119.99713 * 180.02562 * 16 15 13 36 36 H 1.08004 * 120.06059 * 359.97438 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 8 1.1349 -2.3913 0.0005 6 6 1.6544 -3.6471 0.0004 7 6 3.0305 -3.8293 -0.0052 8 6 3.5603 -5.1055 0.0006 9 6 2.7226 -6.2041 0.0005 10 6 1.3445 -6.0279 0.0003 11 7 0.4975 -7.1383 0.0006 12 6 1.0620 -8.4902 0.0006 13 6 -0.0556 -9.5012 0.0004 14 1 -1.0835 -9.1699 -0.0001 15 6 0.2343 -10.8492 0.0009 16 7 1.4860 -11.2526 0.0021 17 14 -1.1510 -12.1024 0.0000 18 1 -1.5169 -12.4348 -1.4004 19 1 -0.7052 -13.3335 0.7006 20 1 -2.3320 -11.5352 0.6989 21 6 0.8106 -4.7463 -0.0002 22 1 -0.5400 0.9352 0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 2.2451 1.6197 -1.0277 25 1 1.4744 2.0648 0.5137 26 1 3.0159 1.1748 0.5138 27 1 2.6902 -1.3632 -0.8894 28 1 2.6902 -1.3625 0.8906 29 1 3.6879 -2.9725 -0.0099 30 1 4.6313 -5.2443 0.0007 31 1 3.1393 -7.2005 0.0008 32 1 -0.4647 -7.0144 0.0009 33 1 1.6759 -8.6275 -0.8895 34 1 1.6763 -8.6273 0.8905 35 1 1.6899 -12.2010 0.0021 36 1 -0.2603 -4.6063 -0.0003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567702062.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:00 Heat of formation + Delta-G solvation = -20.660896 kcal Electronic energy + Delta-G solvation = -16728.560286 eV Core-core repulsion = 13984.265832 eV Total energy + Delta-G solvation = -2744.294454 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.09467 -39.17947 -36.65173 -35.78661 -34.49569 -31.60254 -30.28383 -28.37330 -28.05461 -27.53294 -24.80054 -23.44303 -22.07281 -19.63311 -19.20705 -18.56043 -17.23001 -16.89054 -16.84973 -16.53364 -16.43067 -15.66540 -15.07264 -14.73763 -14.48750 -14.30645 -14.25283 -14.03635 -13.48798 -13.39756 -12.92025 -12.79139 -12.55881 -12.48574 -12.18624 -12.08247 -12.06412 -11.74330 -11.44134 -11.00477 -10.56078 -9.96327 -9.22877 -8.32169 -8.23780 -6.46109 0.58627 0.75963 1.27666 1.40324 1.41728 1.52971 2.11644 2.34734 2.94656 2.98429 3.03830 3.80249 4.02755 4.19937 4.27078 4.34224 4.37455 4.42955 4.53185 4.69869 4.72560 4.86701 4.88114 5.05118 5.13542 5.16771 5.28127 5.41736 5.44173 5.51662 5.65138 5.68278 5.72383 5.86417 5.96694 6.44650 6.57510 6.72071 7.09937 7.27242 8.79692 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.051387 B = 0.003592 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.756470 B = 7792.275040 C = 8311.281386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.146 4.146 3 C -0.109 4.109 4 C 0.086 3.914 5 O -0.326 6.326 6 C 0.170 3.830 7 C -0.273 4.273 8 C -0.029 4.029 9 C -0.258 4.258 10 C 0.242 3.758 11 N -0.732 5.732 12 C 0.273 3.727 13 C -0.560 4.560 14 H 0.070 0.930 15 C 0.010 3.990 16 N -0.925 5.925 17 Si 0.978 3.022 18 H -0.271 1.271 19 H -0.279 1.279 20 H -0.263 1.263 21 C -0.255 4.255 22 H 0.116 0.884 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.151 0.849 30 H 0.148 0.852 31 H 0.103 0.897 32 H 0.397 0.603 33 H -0.006 1.006 34 H -0.006 1.006 35 H 0.270 0.730 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.443 21.503 -0.016 21.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.146 4.146 3 C -0.166 4.166 4 C 0.012 3.988 5 O -0.240 6.240 6 C 0.124 3.876 7 C -0.294 4.294 8 C -0.048 4.048 9 C -0.281 4.281 10 C 0.134 3.866 11 N -0.357 5.357 12 C 0.150 3.850 13 C -0.598 4.598 14 H 0.088 0.912 15 C -0.190 4.190 16 N -0.564 5.564 17 Si 0.802 3.198 18 H -0.196 1.196 19 H -0.204 1.204 20 H -0.187 1.187 21 C -0.279 4.279 22 H 0.134 0.866 23 H 0.107 0.893 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.169 0.831 30 H 0.166 0.834 31 H 0.121 0.879 32 H 0.231 0.769 33 H 0.012 0.988 34 H 0.012 0.988 35 H 0.079 0.921 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.446 21.194 -0.010 21.335 hybrid contribution -0.726 -1.156 -0.016 1.365 sum 1.720 20.038 -0.026 20.112 Atomic orbital electron populations 1.23816 0.95890 1.02351 1.00283 1.21849 0.96020 0.94634 1.02137 1.20790 1.00418 0.92087 1.03298 1.21783 0.91153 0.82934 1.02934 1.85968 1.37036 1.12387 1.88632 1.18574 0.92046 0.83450 0.93499 1.21127 0.93162 0.98717 1.16393 1.20906 1.00046 0.90856 0.92979 1.20740 0.92026 0.99734 1.15572 1.17888 0.90879 0.86971 0.90818 1.45207 1.07655 1.03864 1.78936 1.18593 0.94119 0.78214 0.94062 1.21591 0.93492 0.91803 1.52922 0.91206 1.25918 0.98635 1.00594 0.93883 1.70073 1.19705 1.16639 1.49972 0.85251 0.78467 0.77511 0.78590 1.19622 1.20427 1.18731 1.19666 0.99669 0.88984 1.19622 0.86569 0.89323 0.90288 0.90384 0.90583 0.89789 0.89765 0.83121 0.83438 0.87898 0.76873 0.98846 0.98824 0.92130 0.85764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.60 13.66 67.78 0.93 -2.68 16 2 C -0.15 -2.57 6.05 -16.49 -0.10 -2.67 16 3 C -0.11 -1.19 10.03 71.24 0.71 -0.47 16 4 C 0.09 1.73 5.14 71.24 0.37 2.09 16 5 O -0.33 -9.23 8.53 -92.47 -0.79 -10.02 16 6 C 0.17 5.44 6.68 22.49 0.15 5.59 16 7 C -0.27 -7.73 9.04 22.39 0.20 -7.52 16 8 C -0.03 -0.91 10.03 22.24 0.22 -0.69 16 9 C -0.26 -10.23 9.31 22.42 0.21 -10.02 16 10 C 0.24 10.03 6.65 38.20 0.25 10.28 16 11 N -0.73 -33.28 5.72 -343.19 -1.96 -35.25 16 12 C 0.27 14.72 4.66 85.64 0.40 15.12 16 13 C -0.56 -31.31 9.28 25.60 0.24 -31.07 16 14 H 0.07 3.70 7.60 -2.91 -0.02 3.68 16 15 C 0.01 0.54 5.46 84.65 0.46 1.00 16 16 N -0.93 -54.64 13.29 21.45 0.28 -54.35 16 17 Si 0.98 43.10 29.54 68.60 2.03 45.12 16 18 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 19 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 21 C -0.26 -9.33 9.83 22.49 0.22 -9.11 16 22 H 0.12 1.72 8.04 -2.91 -0.02 1.70 16 23 H 0.09 2.10 6.84 -2.91 -0.02 2.08 16 24 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.08 0.71 8.06 -2.39 -0.02 0.69 16 26 H 0.08 0.66 8.12 -2.39 -0.02 0.64 16 27 H 0.08 1.47 7.65 -2.39 -0.02 1.45 16 28 H 0.08 1.47 7.67 -2.39 -0.02 1.45 16 29 H 0.15 3.14 6.29 -2.91 -0.02 3.12 16 30 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 31 H 0.10 4.49 6.73 -2.91 -0.02 4.47 16 32 H 0.40 16.73 8.33 -92.70 -0.77 15.96 16 33 H -0.01 -0.37 7.95 -2.39 -0.02 -0.38 16 34 H -0.01 -0.35 7.95 -2.39 -0.02 -0.37 16 35 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 36 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -64.13 308.01 4.12 -60.02 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.30 Total: 24.64 kcal Atomic # 6 Polarization: -34.42 SS G_CDS: 4.27 Total: -30.16 kcal Atomic # 7 Polarization: -87.92 SS G_CDS: -1.68 Total: -89.60 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -0.79 Total: -10.02 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -64.13 4.12 -60.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567702062.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.354 kcal (2) G-P(sol) polarization free energy of solvation -64.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds