Wall clock time and date at job start Sun Mar 29 2020 23:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35899 * 116.99871 * 2 1 4 4 C 1.38649 * 119.95222 * 0.02562 * 3 2 1 5 5 C 1.38116 * 119.87437 * 179.97438 * 4 3 2 6 6 C 1.38174 * 119.99816 * 0.02562 * 5 4 3 7 7 C 1.38506 * 120.33339 * 359.97118 * 6 5 4 8 8 C 1.38171 * 119.87440 * 0.03627 * 7 6 5 9 9 C 1.51364 * 109.77435 * 179.97438 * 8 7 6 10 10 C 1.54607 * 105.18248 * 17.20902 * 9 8 7 11 11 H 1.08996 * 110.85568 * 91.82082 * 10 9 8 12 12 N 1.46902 * 110.90420 * 215.45706 * 10 9 8 13 13 C 1.46906 * 110.99978 * 199.31909 * 12 10 9 14 14 C 1.50696 * 109.47205 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99757 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99731 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00344 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99628 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47033 * 89.99912 * 18 16 14 20 20 H 1.48506 * 109.47218 * 209.99454 * 18 16 14 21 21 H 1.48501 * 109.47407 * 329.99923 * 18 16 14 22 22 C 1.51376 * 130.36833 * 180.02562 * 7 6 5 23 23 H 1.08992 * 109.47540 * 300.00323 * 1 2 3 24 24 H 1.08994 * 109.46900 * 60.01183 * 1 2 3 25 25 H 1.09001 * 109.46634 * 180.02562 * 1 2 3 26 26 H 1.08003 * 120.06480 * 359.95373 * 4 3 2 27 27 H 1.07999 * 120.00286 * 179.97438 * 5 4 3 28 28 H 1.07995 * 119.83375 * 180.02562 * 6 5 4 29 29 H 1.09004 * 110.30061 * 136.11554 * 9 8 7 30 30 H 1.08997 * 110.30715 * 258.17128 * 9 8 7 31 31 H 1.00906 * 110.99751 * 323.26545 * 12 10 9 32 32 H 1.09002 * 109.46577 * 299.99784 * 13 12 10 33 33 H 1.09000 * 109.46767 * 59.99467 * 13 12 10 34 34 H 0.97002 * 119.99928 * 179.97438 * 17 16 14 35 35 H 1.09002 * 110.30354 * 281.76502 * 22 7 6 36 36 H 1.08997 * 110.30243 * 43.82016 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2898 2.3730 0.0005 5 6 1.9185 3.6028 0.0011 6 6 3.2984 3.6733 0.0005 7 6 4.0579 2.5150 0.0001 8 6 3.4334 1.2825 -0.0006 9 6 4.4726 0.1819 -0.0017 10 6 5.7870 0.8657 0.4399 11 1 5.9138 0.8016 1.5206 12 7 6.9410 0.2834 -0.2582 13 6 8.1912 0.5782 0.4547 14 6 9.3500 -0.0342 -0.2891 15 1 9.1751 -0.5875 -1.2000 16 6 10.6331 0.1109 0.1939 17 7 10.8460 0.7842 1.3034 18 14 12.0694 -0.6488 -0.7277 19 1 12.5964 0.3276 -1.7147 20 1 13.1418 -1.0069 0.2353 21 1 11.6121 -1.8711 -1.4363 22 6 5.5601 2.3276 0.0000 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5136 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 0.2112 2.3168 0.0002 27 1 1.3315 4.5094 0.0011 28 1 3.7872 4.6363 0.0014 29 1 4.1966 -0.5994 0.7065 30 1 4.5796 -0.2363 -1.0025 31 1 6.8229 -0.7107 -0.3851 32 1 8.3283 1.6578 0.5163 33 1 8.1434 0.1600 1.4601 34 1 11.7487 0.8860 1.6433 35 1 5.9612 2.4880 -1.0008 36 1 6.0267 3.0123 0.7080 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574445310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:17 Heat of formation + Delta-G solvation = -17.143811 kcal Electronic energy + Delta-G solvation = -17243.656919 eV Core-core repulsion = 14499.514977 eV Total energy + Delta-G solvation = -2744.141942 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.45047 -38.29717 -36.05559 -33.55309 -31.85911 -30.61327 -28.50628 -27.16819 -26.94886 -25.55248 -22.12998 -21.37103 -20.85799 -19.93132 -17.50114 -16.48578 -16.21998 -15.86913 -15.48916 -15.13957 -14.64838 -14.18976 -13.99898 -13.30853 -12.84223 -12.81880 -12.41771 -12.37053 -12.03106 -11.81862 -11.57360 -11.18695 -11.10741 -10.89055 -10.80729 -10.69916 -10.56789 -10.37342 -9.83805 -9.15716 -8.48280 -8.40873 -8.06858 -7.32566 -6.01593 -4.03479 1.39503 1.51118 3.26466 3.33891 3.39550 3.43452 3.80585 4.43990 4.56679 4.75443 4.87786 4.98399 4.98751 5.19153 5.27796 5.32791 5.34506 5.42777 5.44624 5.65443 5.79964 5.95185 6.15873 6.18469 6.23435 6.38272 6.43215 6.50504 6.59787 6.75027 6.89774 7.30003 7.40313 7.43845 7.80893 8.14825 8.40630 8.62496 9.05954 9.61481 11.09558 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.043245 B = 0.004184 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.318248 B = 6690.965572 C = 7136.698709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.135 3.865 4 C -0.217 4.217 5 C -0.085 4.085 6 C -0.147 4.147 7 C -0.045 4.045 8 C -0.122 4.122 9 C -0.072 4.072 10 C 0.087 3.913 11 H 0.048 0.952 12 N -0.680 5.680 13 C 0.193 3.807 14 C -0.514 4.514 15 H 0.063 0.937 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.273 1.273 22 C -0.075 4.075 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.097 0.903 26 H 0.125 0.875 27 H 0.123 0.877 28 H 0.121 0.879 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.332 0.668 32 H 0.029 0.971 33 H -0.013 1.013 34 H 0.261 0.739 35 H 0.096 0.904 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.302 2.609 -1.583 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.090 3.910 4 C -0.236 4.236 5 C -0.103 4.103 6 C -0.165 4.165 7 C -0.045 4.045 8 C -0.123 4.123 9 C -0.109 4.109 10 C -0.024 4.024 11 H 0.066 0.934 12 N -0.311 5.311 13 C 0.066 3.934 14 C -0.553 4.553 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.727 3.273 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.112 4.112 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.115 0.885 26 H 0.143 0.857 27 H 0.141 0.859 28 H 0.139 0.861 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.150 0.850 32 H 0.047 0.953 33 H 0.005 0.995 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.990 2.990 -1.889 20.300 hybrid contribution 0.400 -0.674 0.395 0.878 sum -19.590 2.315 -1.494 19.783 Atomic orbital electron populations 1.23006 0.78977 1.03648 1.01070 1.86101 1.20855 1.27180 1.88821 1.18620 0.90775 0.84151 0.97445 1.21021 0.99496 0.92280 1.10790 1.20748 0.94240 0.96780 0.98553 1.20573 0.93326 0.97756 1.04888 1.20666 0.96568 0.92092 0.95208 1.19876 0.90263 0.96907 1.05300 1.21126 0.91695 0.95647 1.02450 1.22154 0.90381 0.93688 0.96158 0.93436 1.60746 1.01835 1.17485 1.51040 1.19608 0.84987 0.97117 0.91663 1.21195 0.91047 1.33688 1.09375 0.91921 1.24984 0.99002 0.95494 0.95073 1.69963 1.21364 1.41367 1.21064 0.86487 0.81854 0.79556 0.79423 1.20628 1.21335 1.19837 1.21173 0.89132 0.97503 1.03402 0.92901 0.92873 0.88483 0.85701 0.85925 0.86082 0.91263 0.89550 0.85044 0.95253 0.99503 0.92926 0.88554 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.17 10.44 -19.42 -0.20 -4.37 16 3 C 0.13 1.92 6.69 -39.17 -0.26 1.65 16 4 C -0.22 -2.60 9.03 -39.47 -0.36 -2.96 16 5 C -0.09 -1.00 10.04 -39.65 -0.40 -1.39 16 6 C -0.15 -1.96 10.04 -39.51 -0.40 -2.36 16 7 C -0.04 -0.70 6.14 -104.22 -0.64 -1.34 16 8 C -0.12 -1.93 6.11 -104.06 -0.64 -2.56 16 9 C -0.07 -1.16 6.20 -26.71 -0.17 -1.33 16 10 C 0.09 1.60 3.37 -66.16 -0.22 1.38 16 11 H 0.05 0.92 7.91 -51.93 -0.41 0.51 16 12 N -0.68 -14.62 6.28 -106.35 -0.67 -15.29 16 13 C 0.19 5.06 5.30 -4.97 -0.03 5.04 16 14 C -0.51 -14.62 9.32 -34.44 -0.32 -14.94 16 15 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 18 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.07 -1.28 6.42 -26.85 -0.17 -1.45 16 23 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 24 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 25 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.13 1.15 6.29 -52.48 -0.33 0.82 16 27 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 28 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.09 1.39 8.08 -51.93 -0.42 0.97 16 31 H 0.33 6.81 8.50 -39.29 -0.33 6.47 16 32 H 0.03 0.82 8.13 -51.93 -0.42 0.40 16 33 H -0.01 -0.36 8.09 -51.93 -0.42 -0.78 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.10 1.73 8.08 -51.93 -0.42 1.31 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 301.85 15.07 4.55 4.55 Total: -1.00 -31.11 301.85 -8.52 -39.63 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -5.21 Total: 2.46 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -2.70 Total: -17.53 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.07 Total: -41.49 kcal Atomic # 8 Polarization: -4.17 SS G_CDS: -0.20 Total: -4.37 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.11 -8.52 -39.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574445310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.484 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds