Wall clock time and date at job start Sun Mar 29 2020 23:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35899 * 116.99871 * 2 1 4 4 C 1.38649 * 119.95222 * 0.02562 * 3 2 1 5 5 C 1.38116 * 119.87437 * 179.97438 * 4 3 2 6 6 C 1.38174 * 119.99816 * 0.02562 * 5 4 3 7 7 C 1.38506 * 120.33339 * 359.97118 * 6 5 4 8 8 C 1.38171 * 119.87440 * 0.03627 * 7 6 5 9 9 C 1.51364 * 109.77435 * 179.97438 * 8 7 6 10 10 C 1.54607 * 105.18248 * 17.20902 * 9 8 7 11 11 H 1.08996 * 110.85568 * 91.82082 * 10 9 8 12 12 N 1.46902 * 110.90420 * 215.45706 * 10 9 8 13 13 C 1.46906 * 110.99978 * 199.31909 * 12 10 9 14 14 C 1.50696 * 109.47205 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99757 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99731 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00344 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99628 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47033 * 89.99912 * 18 16 14 20 20 H 1.48506 * 109.47218 * 209.99454 * 18 16 14 21 21 H 1.48501 * 109.47407 * 329.99923 * 18 16 14 22 22 C 1.51376 * 130.36833 * 180.02562 * 7 6 5 23 23 H 1.08992 * 109.47540 * 300.00323 * 1 2 3 24 24 H 1.08994 * 109.46900 * 60.01183 * 1 2 3 25 25 H 1.09001 * 109.46634 * 180.02562 * 1 2 3 26 26 H 1.08003 * 120.06480 * 359.95373 * 4 3 2 27 27 H 1.07999 * 120.00286 * 179.97438 * 5 4 3 28 28 H 1.07995 * 119.83375 * 180.02562 * 6 5 4 29 29 H 1.09004 * 110.30061 * 136.11554 * 9 8 7 30 30 H 1.08997 * 110.30715 * 258.17128 * 9 8 7 31 31 H 1.00906 * 110.99751 * 323.26545 * 12 10 9 32 32 H 1.09002 * 109.46577 * 299.99784 * 13 12 10 33 33 H 1.09000 * 109.46767 * 59.99467 * 13 12 10 34 34 H 0.97002 * 119.99928 * 179.97438 * 17 16 14 35 35 H 1.09002 * 110.30354 * 281.76502 * 22 7 6 36 36 H 1.08997 * 110.30243 * 43.82016 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2898 2.3730 0.0005 5 6 1.9185 3.6028 0.0011 6 6 3.2984 3.6733 0.0005 7 6 4.0579 2.5150 0.0001 8 6 3.4334 1.2825 -0.0006 9 6 4.4726 0.1819 -0.0017 10 6 5.7870 0.8657 0.4399 11 1 5.9138 0.8016 1.5206 12 7 6.9410 0.2834 -0.2582 13 6 8.1912 0.5782 0.4547 14 6 9.3500 -0.0342 -0.2891 15 1 9.1751 -0.5875 -1.2000 16 6 10.6331 0.1109 0.1939 17 7 10.8460 0.7842 1.3034 18 14 12.0694 -0.6488 -0.7277 19 1 12.5964 0.3276 -1.7147 20 1 13.1418 -1.0069 0.2353 21 1 11.6121 -1.8711 -1.4363 22 6 5.5601 2.3276 0.0000 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5136 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 0.2112 2.3168 0.0002 27 1 1.3315 4.5094 0.0011 28 1 3.7872 4.6363 0.0014 29 1 4.1966 -0.5994 0.7065 30 1 4.5796 -0.2363 -1.0025 31 1 6.8229 -0.7107 -0.3851 32 1 8.3283 1.6578 0.5163 33 1 8.1434 0.1600 1.4601 34 1 11.7487 0.8860 1.6433 35 1 5.9612 2.4880 -1.0008 36 1 6.0267 3.0123 0.7080 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574445310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:17 Heat of formation + Delta-G solvation = -37.043765 kcal Electronic energy + Delta-G solvation = -17244.519845 eV Core-core repulsion = 14499.514977 eV Total energy + Delta-G solvation = -2745.004869 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.51003 -39.39947 -37.42422 -35.36874 -33.70186 -31.66769 -29.91168 -28.28039 -28.13042 -27.20610 -23.95484 -22.66189 -21.97216 -21.36295 -18.56326 -18.46945 -17.34749 -16.96650 -16.74695 -16.46263 -16.37825 -15.50113 -15.24901 -14.61759 -14.46216 -14.04040 -13.80422 -13.74151 -13.54276 -13.34851 -12.79088 -12.73512 -12.52426 -12.35850 -12.19287 -12.10816 -11.83858 -11.80428 -11.65429 -11.27833 -10.66099 -9.53727 -9.19174 -9.07508 -8.22096 -6.33382 0.34950 0.48767 1.42127 1.44103 1.55367 2.40672 2.42842 2.76971 3.11420 3.40095 3.40667 3.76851 4.03708 4.05624 4.17614 4.30289 4.42781 4.42947 4.47070 4.58246 4.74766 4.79475 4.81570 4.85802 4.93235 4.99909 5.15367 5.21795 5.27855 5.36206 5.50392 5.63453 5.66926 5.86986 6.02765 6.43709 6.49077 6.70579 6.88450 7.37607 8.89734 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.043245 B = 0.004184 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.318248 B = 6690.965572 C = 7136.698709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.127 3.873 4 C -0.210 4.210 5 C -0.076 4.076 6 C -0.155 4.155 7 C -0.063 4.063 8 C -0.149 4.149 9 C -0.059 4.059 10 C 0.083 3.917 11 H 0.033 0.967 12 N -0.675 5.675 13 C 0.209 3.791 14 C -0.537 4.537 15 H 0.066 0.934 16 C 0.002 3.998 17 N -0.934 5.934 18 Si 0.974 3.026 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.263 1.263 22 C -0.069 4.069 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.115 0.885 26 H 0.158 0.842 27 H 0.160 0.840 28 H 0.136 0.864 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.338 0.662 32 H 0.003 0.997 33 H -0.040 1.040 34 H 0.265 0.735 35 H 0.083 0.917 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.210 2.789 -2.496 22.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.082 3.918 4 C -0.229 4.229 5 C -0.094 4.094 6 C -0.173 4.173 7 C -0.063 4.063 8 C -0.150 4.150 9 C -0.097 4.097 10 C -0.028 4.028 11 H 0.051 0.949 12 N -0.306 5.306 13 C 0.081 3.919 14 C -0.575 4.575 15 H 0.084 0.916 16 C -0.197 4.197 17 N -0.575 5.575 18 Si 0.798 3.202 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.187 1.187 22 C -0.107 4.107 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.133 0.867 26 H 0.176 0.824 27 H 0.178 0.822 28 H 0.154 0.846 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.156 0.844 32 H 0.022 0.978 33 H -0.022 1.022 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.932 3.164 -2.809 22.336 hybrid contribution 0.843 -0.708 0.710 1.310 sum -21.088 2.456 -2.099 21.334 Atomic orbital electron populations 1.23344 0.76469 1.05446 1.02369 1.86071 1.23495 1.26969 1.88685 1.18757 0.90337 0.85423 0.97292 1.21433 1.01101 0.91439 1.08906 1.21191 0.93611 0.98222 0.96354 1.20844 0.94330 0.97520 1.04611 1.20537 0.95147 0.93299 0.97355 1.19878 0.91311 0.96352 1.07500 1.20924 0.90620 0.95943 1.02181 1.22189 0.90419 0.95062 0.95104 0.94870 1.60637 1.01308 1.18043 1.50627 1.19244 0.86974 0.95056 0.90602 1.21552 0.92100 1.34108 1.09728 0.91624 1.25956 1.02080 0.95742 0.95884 1.70094 1.22300 1.42438 1.22623 0.85314 0.77835 0.78928 0.78092 1.19839 1.20682 1.18685 1.21004 0.91191 0.96234 1.02282 0.91538 0.91451 0.86685 0.82406 0.82210 0.84616 0.90961 0.89798 0.84415 0.97842 1.02237 0.92599 0.89912 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.36 16 2 O -0.34 -8.33 10.44 -92.42 -0.97 -9.30 16 3 C 0.13 3.39 6.69 22.54 0.15 3.55 16 4 C -0.21 -4.33 9.03 22.34 0.20 -4.13 16 5 C -0.08 -1.51 10.04 22.23 0.22 -1.29 16 6 C -0.15 -3.87 10.04 22.32 0.22 -3.65 16 7 C -0.06 -1.96 6.14 -19.60 -0.12 -2.08 16 8 C -0.15 -4.69 6.11 -19.50 -0.12 -4.81 16 9 C -0.06 -1.97 6.20 30.61 0.19 -1.78 16 10 C 0.08 3.21 3.37 45.92 0.15 3.36 16 11 H 0.03 1.38 7.91 -2.39 -0.02 1.36 16 12 N -0.68 -30.34 6.28 -490.39 -3.08 -33.42 16 13 C 0.21 11.52 5.30 85.55 0.45 11.98 16 14 C -0.54 -31.20 9.32 25.60 0.24 -30.96 16 15 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 16 C 0.00 0.09 5.46 84.65 0.46 0.55 16 17 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 18 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 21 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 22 C -0.07 -2.50 6.42 30.52 0.20 -2.30 16 23 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 24 H 0.07 0.73 7.66 -2.39 -0.02 0.72 16 25 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.16 2.14 6.29 -2.91 -0.02 2.12 16 27 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 28 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 29 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 30 H 0.08 2.77 8.08 -2.39 -0.02 2.75 16 31 H 0.34 14.35 8.50 -89.69 -0.76 13.59 16 32 H 0.00 0.21 8.13 -2.39 -0.02 0.19 16 33 H -0.04 -2.38 8.09 -2.39 -0.02 -2.40 16 34 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 35 H 0.08 3.14 8.08 -2.39 -0.02 3.12 16 36 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -68.35 301.85 1.94 -66.40 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.31 Total: 16.66 kcal Atomic # 6 Polarization: -33.56 SS G_CDS: 3.37 Total: -30.19 kcal Atomic # 7 Polarization: -87.61 SS G_CDS: -2.79 Total: -90.40 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -0.97 Total: -9.30 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -68.35 1.94 -66.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574445310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.359 kcal (2) G-P(sol) polarization free energy of solvation -68.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds