Wall clock time and date at job start Sun Mar 29 2020 22:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46921 * 2 1 4 4 C 1.50691 * 109.47253 * 120.00068 * 2 1 3 5 5 C 1.38403 * 119.92813 * 299.97836 * 4 2 1 6 6 C 1.38354 * 120.30763 * 180.02562 * 5 4 2 7 7 C 1.37956 * 120.15187 * 359.96010 * 6 5 4 8 8 C 1.39633 * 119.84545 * 0.05948 * 7 6 5 9 9 C 1.47721 * 120.14902 * 179.97438 * 8 7 6 10 10 O 1.21595 * 119.99925 * 34.84858 * 9 8 7 11 11 N 1.34779 * 120.00032 * 214.84800 * 9 8 7 12 12 C 1.46498 * 119.99878 * 5.98990 * 11 9 8 13 13 C 1.36872 * 119.99892 * 185.98773 * 11 9 8 14 14 H 1.08008 * 120.00354 * 334.34730 * 13 11 9 15 15 C 1.39046 * 119.99764 * 154.35470 * 13 11 9 16 16 N 1.31362 * 120.00282 * 349.71219 * 15 13 11 17 17 Si 1.86807 * 120.00016 * 169.71842 * 15 13 11 18 18 H 1.48502 * 109.46855 * 89.99792 * 17 15 13 19 19 H 1.48502 * 109.47188 * 209.99524 * 17 15 13 20 20 H 1.48498 * 109.47019 * 330.00012 * 17 15 13 21 21 C 1.37922 * 119.92472 * 119.99792 * 4 2 1 22 22 H 1.09001 * 109.46884 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46611 * 299.99930 * 1 2 3 24 24 H 1.09004 * 109.47175 * 59.99785 * 1 2 3 25 25 H 1.09000 * 109.47211 * 240.00433 * 2 1 3 26 26 H 1.09004 * 109.46646 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47003 * 300.00378 * 3 2 1 28 28 H 1.09000 * 109.46824 * 60.00196 * 3 2 1 29 29 H 1.08003 * 119.84103 * 359.97438 * 5 4 2 30 30 H 1.07999 * 119.92514 * 179.97438 * 6 5 4 31 31 H 1.07999 * 120.07734 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.46867 * 24.92913 * 12 11 9 33 33 H 1.08997 * 109.46932 * 144.92313 * 12 11 9 34 34 H 1.08993 * 109.46927 * 264.92754 * 12 11 9 35 35 H 0.96999 * 120.00206 * 179.97438 * 16 15 13 36 36 H 1.08002 * 120.07498 * 359.72552 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6975 -0.2360 2.4867 6 6 2.1548 -0.8818 3.6216 7 6 2.9480 -2.0048 3.5077 8 6 3.2901 -2.4886 2.2434 9 6 4.1395 -3.6902 2.1137 10 8 4.0415 -4.5941 2.9211 11 7 5.0231 -3.7847 1.1003 12 6 5.2356 -2.6446 0.2052 13 6 5.7218 -4.9457 0.9076 14 1 5.9013 -5.6123 1.7383 15 6 6.2006 -5.2671 -0.3576 16 7 5.8161 -4.5695 -1.4022 17 14 7.3906 -6.6910 -0.5721 18 1 6.6274 -7.9415 -0.8152 19 1 8.2813 -6.4218 -1.7294 20 1 8.2089 -6.8418 0.6579 21 6 2.8252 -1.8316 1.1020 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.0770 0.6429 2.5815 30 1 1.8901 -0.5060 4.5989 31 1 3.3047 -2.5077 4.3944 32 1 4.9750 -1.7220 0.7238 33 1 6.2827 -2.6091 -0.0955 34 1 4.6073 -2.7546 -0.6786 35 1 6.1505 -4.7935 -2.2848 36 1 3.0824 -2.2032 0.1211 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597011847.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:10 Heat of formation + Delta-G solvation = -12.039101 kcal Electronic energy + Delta-G solvation = -17920.739300 eV Core-core repulsion = 15176.818715 eV Total energy + Delta-G solvation = -2743.920585 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.62378 -37.83697 -35.11405 -34.59133 -31.92159 -30.39882 -29.40451 -27.09257 -26.32109 -24.95908 -23.09332 -22.23349 -20.68383 -18.48877 -16.99400 -16.34430 -15.91774 -15.25362 -14.88074 -14.18084 -14.10239 -13.94130 -13.41833 -13.39494 -13.08554 -12.62905 -12.30476 -11.99927 -11.78179 -11.68642 -11.60607 -11.24471 -11.05665 -11.00117 -10.81694 -10.59086 -10.41523 -10.35774 -10.26456 -9.06241 -8.55533 -8.35465 -8.22174 -7.67281 -6.35393 -3.91896 1.53228 1.78540 3.16280 3.23564 3.29403 3.76325 4.11652 4.40964 4.79019 4.87378 4.95835 5.13807 5.28258 5.32487 5.41558 5.56514 5.64141 5.66933 5.80688 5.84427 5.87214 5.98733 6.06253 6.24117 6.29472 6.32359 6.41618 6.44814 6.80947 6.84112 6.92093 6.99153 7.17908 7.36427 7.52726 8.12727 8.46765 9.15151 9.37502 9.96274 10.67580 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.028787 B = 0.006365 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.443629 B = 4398.264437 C = 5090.542376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.057 4.057 3 C -0.142 4.142 4 C -0.089 4.089 5 C -0.114 4.114 6 C -0.130 4.130 7 C -0.084 4.084 8 C -0.093 4.093 9 C 0.479 3.521 10 O -0.588 6.588 11 N -0.434 5.434 12 C 0.107 3.893 13 C -0.306 4.306 14 H 0.100 0.900 15 C 0.032 3.968 16 N -0.879 5.879 17 Si 0.929 3.071 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.269 1.269 21 C -0.094 4.094 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.115 0.885 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.036 0.964 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.269 0.731 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.677 11.772 0.747 13.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.075 4.075 3 C -0.199 4.199 4 C -0.089 4.089 5 C -0.132 4.132 6 C -0.148 4.148 7 C -0.104 4.104 8 C -0.097 4.097 9 C 0.268 3.732 10 O -0.474 6.474 11 N -0.151 5.151 12 C -0.037 4.037 13 C -0.434 4.434 14 H 0.117 0.883 15 C -0.172 4.172 16 N -0.518 5.518 17 Si 0.755 3.245 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.193 1.193 21 C -0.112 4.112 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.097 0.903 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.133 0.867 30 H 0.137 0.863 31 H 0.142 0.858 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.632 11.315 0.890 13.145 hybrid contribution 0.586 -0.625 -0.332 0.919 sum -6.046 10.690 0.557 12.294 Atomic orbital electron populations 1.21846 0.94654 1.02012 1.01436 1.20105 0.95683 0.95902 0.95813 1.21843 1.01438 0.95208 1.01425 1.19724 0.98436 0.96242 0.94517 1.20935 1.00420 0.99833 0.92037 1.20974 0.99213 0.96454 0.98197 1.21204 0.96904 0.95282 0.96972 1.20328 0.99474 0.96219 0.93633 1.18065 0.82660 0.87061 0.85419 1.90598 1.71005 1.41699 1.44102 1.43445 1.33749 1.12518 1.25358 1.21800 1.02495 0.86080 0.93302 1.19663 1.30116 0.98477 0.95129 0.88271 1.25411 0.98403 0.98681 0.94676 1.69941 1.42397 1.40436 0.99018 0.85886 0.79829 0.80731 0.78012 1.20206 1.20780 1.19338 1.21666 0.96146 0.94277 0.99139 0.92491 0.92676 0.92669 0.90260 0.92391 0.92677 0.92702 0.86666 0.86330 0.85752 0.94577 0.92102 0.91573 0.92106 0.84681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.01 37.16 0.33 -1.19 16 2 C -0.06 -0.70 3.09 -91.77 -0.28 -0.98 16 3 C -0.14 -1.49 9.01 37.16 0.33 -1.16 16 4 C -0.09 -1.35 4.78 -104.68 -0.50 -1.85 16 5 C -0.11 -1.59 8.71 -39.48 -0.34 -1.93 16 6 C -0.13 -1.94 10.03 -39.64 -0.40 -2.33 16 7 C -0.08 -1.56 9.61 -39.16 -0.38 -1.93 16 8 C -0.09 -1.97 5.17 -104.97 -0.54 -2.51 16 9 C 0.48 12.49 7.31 -12.38 -0.09 12.40 16 10 O -0.59 -17.25 16.53 5.28 0.09 -17.17 16 11 N -0.43 -11.50 3.00 -123.32 -0.37 -11.88 16 12 C 0.11 2.44 7.09 59.85 0.42 2.86 16 13 C -0.31 -8.67 9.25 -15.00 -0.14 -8.81 16 14 H 0.10 2.93 7.41 -52.48 -0.39 2.55 16 15 C 0.03 0.85 5.15 -17.45 -0.09 0.76 16 16 N -0.88 -23.30 10.72 55.50 0.59 -22.70 16 17 Si 0.93 20.79 29.57 -169.99 -5.03 15.76 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 C -0.09 -1.73 7.21 -39.17 -0.28 -2.01 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.55 7.38 -51.93 -0.38 0.16 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.08 1.01 7.87 -51.93 -0.41 0.60 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.53 7.38 -51.93 -0.38 0.15 16 29 H 0.12 1.29 7.08 -52.48 -0.37 0.92 16 30 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 31 H 0.12 2.29 8.00 -52.49 -0.42 1.87 16 32 H 0.04 0.72 5.74 -51.93 -0.30 0.43 16 33 H 0.06 1.44 7.44 -51.93 -0.39 1.05 16 34 H 0.07 1.54 6.20 -51.93 -0.32 1.21 16 35 H 0.27 6.71 8.31 -40.82 -0.34 6.38 16 36 H 0.14 2.60 5.40 -52.49 -0.28 2.31 16 LS Contribution 295.40 15.07 4.45 4.45 Total: -1.00 -30.97 295.40 -7.11 -38.08 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -4.89 Total: 2.14 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -1.95 Total: -8.69 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.22 Total: -34.58 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.09 Total: -17.17 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.97 -7.11 -38.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597011847.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.036 kcal (2) G-P(sol) polarization free energy of solvation -30.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds