Wall clock time and date at job start Sun Mar 29 2020 22:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46921 * 2 1 4 4 C 1.50691 * 109.47253 * 120.00068 * 2 1 3 5 5 C 1.38403 * 119.92813 * 299.97836 * 4 2 1 6 6 C 1.38354 * 120.30763 * 180.02562 * 5 4 2 7 7 C 1.37956 * 120.15187 * 359.96010 * 6 5 4 8 8 C 1.39633 * 119.84545 * 0.05948 * 7 6 5 9 9 C 1.47721 * 120.14902 * 179.97438 * 8 7 6 10 10 O 1.21595 * 119.99925 * 34.84858 * 9 8 7 11 11 N 1.34779 * 120.00032 * 214.84800 * 9 8 7 12 12 C 1.46498 * 119.99878 * 5.98990 * 11 9 8 13 13 C 1.36872 * 119.99892 * 185.98773 * 11 9 8 14 14 H 1.08008 * 120.00354 * 334.34730 * 13 11 9 15 15 C 1.39046 * 119.99764 * 154.35470 * 13 11 9 16 16 N 1.31362 * 120.00282 * 349.71219 * 15 13 11 17 17 Si 1.86807 * 120.00016 * 169.71842 * 15 13 11 18 18 H 1.48502 * 109.46855 * 89.99792 * 17 15 13 19 19 H 1.48502 * 109.47188 * 209.99524 * 17 15 13 20 20 H 1.48498 * 109.47019 * 330.00012 * 17 15 13 21 21 C 1.37922 * 119.92472 * 119.99792 * 4 2 1 22 22 H 1.09001 * 109.46884 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46611 * 299.99930 * 1 2 3 24 24 H 1.09004 * 109.47175 * 59.99785 * 1 2 3 25 25 H 1.09000 * 109.47211 * 240.00433 * 2 1 3 26 26 H 1.09004 * 109.46646 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47003 * 300.00378 * 3 2 1 28 28 H 1.09000 * 109.46824 * 60.00196 * 3 2 1 29 29 H 1.08003 * 119.84103 * 359.97438 * 5 4 2 30 30 H 1.07999 * 119.92514 * 179.97438 * 6 5 4 31 31 H 1.07999 * 120.07734 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.46867 * 24.92913 * 12 11 9 33 33 H 1.08997 * 109.46932 * 144.92313 * 12 11 9 34 34 H 1.08993 * 109.46927 * 264.92754 * 12 11 9 35 35 H 0.96999 * 120.00206 * 179.97438 * 16 15 13 36 36 H 1.08002 * 120.07498 * 359.72552 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6975 -0.2360 2.4867 6 6 2.1548 -0.8818 3.6216 7 6 2.9480 -2.0048 3.5077 8 6 3.2901 -2.4886 2.2434 9 6 4.1395 -3.6902 2.1137 10 8 4.0415 -4.5941 2.9211 11 7 5.0231 -3.7847 1.1003 12 6 5.2356 -2.6446 0.2052 13 6 5.7218 -4.9457 0.9076 14 1 5.9013 -5.6123 1.7383 15 6 6.2006 -5.2671 -0.3576 16 7 5.8161 -4.5695 -1.4022 17 14 7.3906 -6.6910 -0.5721 18 1 6.6274 -7.9415 -0.8152 19 1 8.2813 -6.4218 -1.7294 20 1 8.2089 -6.8418 0.6579 21 6 2.8252 -1.8316 1.1020 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.0770 0.6429 2.5815 30 1 1.8901 -0.5060 4.5989 31 1 3.3047 -2.5077 4.3944 32 1 4.9750 -1.7220 0.7238 33 1 6.2827 -2.6091 -0.0955 34 1 4.6073 -2.7546 -0.6786 35 1 6.1505 -4.7935 -2.2848 36 1 3.0824 -2.2032 0.1211 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597011847.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:10 Heat of formation + Delta-G solvation = -29.997909 kcal Electronic energy + Delta-G solvation = -17921.518052 eV Core-core repulsion = 15176.818715 eV Total energy + Delta-G solvation = -2744.699338 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.19514 -39.50774 -36.83973 -36.06388 -33.89101 -31.93232 -30.65474 -28.27583 -27.88917 -26.86689 -24.52663 -23.56721 -22.11483 -20.01062 -19.03975 -17.97751 -17.48395 -16.74556 -16.54589 -15.92444 -15.80616 -15.22961 -14.72849 -14.52808 -14.48262 -14.26726 -13.78289 -13.44107 -13.22709 -13.09973 -12.90869 -12.82689 -12.75619 -12.43676 -12.31954 -12.12728 -11.95351 -11.65627 -11.47272 -11.08966 -10.51925 -9.79073 -9.72531 -9.57845 -8.40228 -6.07981 0.11069 0.47466 1.36801 1.38114 1.51654 2.03100 2.23973 2.83157 3.00525 3.10140 3.73095 3.87041 4.03764 4.16984 4.28336 4.39728 4.47710 4.51654 4.59444 4.62119 4.90121 4.90763 4.94377 5.04604 5.07166 5.12449 5.24828 5.30018 5.35305 5.38059 5.48710 5.53186 5.56297 5.71984 6.03539 6.08203 6.41726 7.06711 7.33693 7.92181 8.61619 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.028787 B = 0.006365 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.443629 B = 4398.264437 C = 5090.542376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.058 4.058 3 C -0.139 4.139 4 C -0.081 4.081 5 C -0.095 4.095 6 C -0.115 4.115 7 C -0.099 4.099 8 C -0.127 4.127 9 C 0.467 3.533 10 O -0.637 6.637 11 N -0.448 5.448 12 C 0.124 3.876 13 C -0.352 4.352 14 H 0.071 0.929 15 C 0.001 3.999 16 N -0.891 5.891 17 Si 0.995 3.005 18 H -0.274 1.274 19 H -0.262 1.262 20 H -0.270 1.270 21 C -0.104 4.104 22 H 0.041 0.959 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.046 0.954 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.160 0.840 30 H 0.159 0.841 31 H 0.113 0.887 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.277 0.723 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.998 14.429 0.335 16.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.077 4.077 3 C -0.196 4.196 4 C -0.081 4.081 5 C -0.113 4.113 6 C -0.133 4.133 7 C -0.118 4.118 8 C -0.130 4.130 9 C 0.258 3.742 10 O -0.527 6.527 11 N -0.165 5.165 12 C -0.018 4.018 13 C -0.480 4.480 14 H 0.089 0.911 15 C -0.202 4.202 16 N -0.529 5.529 17 Si 0.818 3.182 18 H -0.199 1.199 19 H -0.187 1.187 20 H -0.195 1.195 21 C -0.123 4.123 22 H 0.061 0.939 23 H 0.090 0.910 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.178 0.822 30 H 0.177 0.823 31 H 0.131 0.869 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.957 14.010 0.447 16.118 hybrid contribution 0.890 -1.354 -0.202 1.633 sum -7.067 12.656 0.245 14.497 Atomic orbital electron populations 1.21840 0.92974 1.01650 1.03210 1.20186 0.96968 0.96720 0.93813 1.21831 1.00801 0.93789 1.03145 1.20069 0.96684 0.94667 0.96690 1.21439 0.98942 1.00173 0.90746 1.21367 0.96969 0.94365 1.00598 1.21275 0.98226 0.96935 0.95400 1.20030 1.01107 0.95900 0.95931 1.18955 0.82547 0.88318 0.84382 1.90525 1.72504 1.43974 1.45684 1.43682 1.33823 1.12926 1.26039 1.21684 1.01320 0.86064 0.92767 1.19640 1.33023 0.99921 0.95429 0.91061 1.26213 0.99190 1.01046 0.93716 1.70001 1.42363 1.41125 0.99387 0.84923 0.77680 0.77310 0.78314 1.19937 1.18667 1.19503 1.21539 0.97670 0.95693 0.97414 0.93941 0.91046 0.90830 0.91470 0.93451 0.90920 0.91093 0.82241 0.82322 0.86891 0.92055 0.93432 0.92227 0.91297 0.86385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.01 71.98 0.65 -1.83 16 2 C -0.06 -1.27 3.09 -11.54 -0.04 -1.30 16 3 C -0.14 -2.36 9.01 71.98 0.65 -1.71 16 4 C -0.08 -2.26 4.78 -19.90 -0.10 -2.35 16 5 C -0.10 -2.22 8.71 22.34 0.19 -2.03 16 6 C -0.12 -3.03 10.03 22.23 0.22 -2.81 16 7 C -0.10 -3.65 9.61 22.54 0.22 -3.43 16 8 C -0.13 -5.52 5.17 -20.09 -0.10 -5.63 16 9 C 0.47 25.91 7.31 86.75 0.63 26.55 16 10 O -0.64 -40.12 16.53 -4.01 -0.07 -40.19 16 11 N -0.45 -25.17 3.00 -662.34 -1.99 -27.16 16 12 C 0.12 5.92 7.09 127.77 0.91 6.82 16 13 C -0.35 -21.13 9.25 84.10 0.78 -20.35 16 14 H 0.07 4.55 7.41 -2.91 -0.02 4.53 16 15 C 0.00 0.06 5.15 84.96 0.44 0.49 16 16 N -0.89 -47.95 10.72 21.68 0.23 -47.71 16 17 Si 1.00 43.31 29.57 68.60 2.03 45.34 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 19 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 C -0.10 -3.88 7.21 22.54 0.16 -3.72 16 22 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.07 1.04 7.38 -2.38 -0.02 1.02 16 24 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.07 1.62 7.87 -2.39 -0.02 1.60 16 26 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 0.99 7.38 -2.39 -0.02 0.97 16 29 H 0.16 2.45 7.08 -2.91 -0.02 2.43 16 30 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 31 H 0.11 4.31 8.00 -2.91 -0.02 4.29 16 32 H 0.06 2.55 5.74 -2.39 -0.01 2.54 16 33 H 0.05 2.33 7.44 -2.39 -0.02 2.31 16 34 H 0.06 2.88 6.20 -2.39 -0.01 2.87 16 35 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 36 H 0.12 4.72 5.40 -2.91 -0.02 4.71 16 Total: -1.00 -71.87 295.40 5.89 -65.98 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 1.07 Total: 15.03 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 4.62 Total: -11.29 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: -1.76 Total: -74.87 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -0.07 Total: -40.19 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -71.87 5.89 -65.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597011847.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.987 kcal (2) G-P(sol) polarization free energy of solvation -71.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds