Wall clock time and date at job start Sun Mar 29 2020 23:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46811 * 2 1 4 4 C 1.52992 * 109.47399 * 239.99562 * 2 1 3 5 5 C 1.50703 * 109.47282 * 175.00119 * 4 2 1 6 6 H 1.08000 * 119.99800 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00247 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00304 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00122 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46838 * 90.00142 * 9 7 5 11 11 H 1.48502 * 109.47429 * 209.99478 * 9 7 5 12 12 H 1.48499 * 109.47391 * 330.00423 * 9 7 5 13 13 N 1.46907 * 109.47058 * 119.99105 * 2 1 3 14 14 C 1.48042 * 110.99706 * 50.71244 * 13 2 1 15 15 C 1.51201 * 105.67498 * 213.00212 * 14 13 2 16 16 C 1.38237 * 131.70457 * 197.51555 * 15 14 13 17 17 C 1.38119 * 120.10128 * 180.02562 * 16 15 14 18 18 C 1.38758 * 119.94753 * 0.02562 * 17 16 15 19 19 O 1.35901 * 120.06081 * 179.97438 * 18 17 16 20 20 C 1.38718 * 119.88391 * 0.02562 * 18 17 16 21 21 C 1.38094 * 119.98614 * 359.96437 * 20 18 17 22 22 C 1.48039 * 111.00065 * 295.69815 * 13 2 1 23 23 H 1.09001 * 109.46903 * 171.52147 * 1 2 3 24 24 H 1.09001 * 109.47550 * 291.51773 * 1 2 3 25 25 H 1.08993 * 109.47391 * 51.52414 * 1 2 3 26 26 H 1.09003 * 109.47505 * 54.99718 * 4 2 1 27 27 H 1.09000 * 109.47146 * 294.99526 * 4 2 1 28 28 H 0.96996 * 120.00418 * 179.97438 * 8 7 5 29 29 H 1.09006 * 110.21158 * 332.05433 * 14 13 2 30 30 H 1.09004 * 110.20756 * 93.95200 * 14 13 2 31 31 H 1.08000 * 119.95062 * 0.02871 * 16 15 14 32 32 H 1.07994 * 120.02962 * 179.97438 * 17 16 15 33 33 H 0.96700 * 113.99446 * 89.99818 * 19 18 17 34 34 H 1.08000 * 120.00573 * 180.02562 * 20 18 17 35 35 H 1.09000 * 110.21124 * 266.04028 * 22 13 2 36 36 H 1.08995 * 110.21146 * 27.86204 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5419 -0.6150 -1.3125 6 1 4.0789 -0.0855 -0.5394 7 6 4.2304 -1.1927 -2.3580 8 7 3.5766 -1.8371 -3.2998 9 14 6.0921 -1.0603 -2.4370 10 1 6.7009 -2.2129 -1.7255 11 1 6.5292 -1.0678 -3.8562 12 1 6.5262 0.2049 -1.7920 13 7 2.0196 -0.6923 1.1996 14 6 1.3713 -2.0146 1.3507 15 6 1.2549 -2.2447 2.8406 16 6 1.0367 -3.3923 3.5797 17 6 0.9717 -3.3268 4.9578 18 6 1.1252 -2.1071 5.6013 19 8 1.0611 -2.0400 6.9571 20 6 1.3431 -0.9562 4.8582 21 6 1.4076 -1.0261 3.4805 22 6 1.6315 0.0364 2.4284 23 1 -0.3633 -1.0165 -0.1515 24 1 -0.3634 0.3769 0.9560 25 1 -0.3634 0.6393 -0.8045 26 1 1.6054 -0.2619 -2.1369 27 1 1.7518 -1.7716 -1.2053 28 1 4.0609 -2.2433 -4.0355 29 1 0.3821 -2.0036 0.8930 30 1 1.9882 -2.7905 0.8970 31 1 0.9168 -4.3416 3.0788 32 1 0.8007 -4.2240 5.5340 33 1 1.9143 -2.1555 7.3973 34 1 1.4632 -0.0059 5.3571 35 1 2.4320 0.7092 2.7359 36 1 0.7127 0.5978 2.2588 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599536719.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:10 Heat of formation + Delta-G solvation = -3.056436 kcal Electronic energy + Delta-G solvation = -17723.755108 eV Core-core repulsion = 14980.224040 eV Total energy + Delta-G solvation = -2743.531068 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.44334 -38.42251 -36.18545 -33.27428 -31.84264 -31.03049 -28.57898 -27.39612 -26.97666 -24.10400 -22.71602 -21.41569 -21.19627 -18.88096 -18.01374 -16.34791 -16.21618 -15.66577 -15.25477 -15.12048 -14.37716 -14.00551 -13.62631 -13.49823 -13.19738 -12.68018 -12.42416 -11.91011 -11.74646 -11.62684 -11.44185 -11.21258 -11.11381 -11.01563 -10.68906 -10.43317 -10.35214 -10.01959 -9.24526 -9.06050 -8.81664 -8.48569 -8.27561 -7.57689 -5.90267 -3.88491 1.26686 1.37460 3.39311 3.45132 3.49351 3.60777 4.11231 4.52231 4.57285 4.67694 4.82809 5.01217 5.35743 5.46535 5.50461 5.55555 5.66513 5.71848 5.77087 5.87447 5.92998 6.08164 6.09574 6.20479 6.37962 6.40686 6.47815 6.59788 6.72482 6.82303 6.90113 7.36796 7.47325 7.58542 7.75557 7.90387 8.09899 8.54795 9.17350 9.73634 11.21670 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.029526 B = 0.005408 C = 0.005096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.098766 B = 5175.815828 C = 5492.810361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.074 3.926 3 H 0.076 0.924 4 C 0.032 3.968 5 C -0.493 4.493 6 H 0.061 0.939 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.890 3.110 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.471 5.471 14 C 0.069 3.931 15 C -0.097 4.097 16 C -0.089 4.089 17 C -0.146 4.146 18 C 0.094 3.906 19 O -0.500 6.500 20 C -0.129 4.129 21 C -0.082 4.082 22 C 0.064 3.936 23 H 0.057 0.943 24 H 0.045 0.955 25 H 0.059 0.941 26 H 0.021 0.979 27 H 0.018 0.982 28 H 0.258 0.742 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.387 0.613 34 H 0.125 0.875 35 H 0.086 0.914 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.829 -0.338 15.241 16.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.034 4.034 3 H 0.094 0.906 4 C -0.005 4.005 5 C -0.532 4.532 6 H 0.079 0.921 7 C -0.148 4.148 8 N -0.544 5.544 9 Si 0.719 3.281 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.194 5.194 14 C -0.058 4.058 15 C -0.098 4.098 16 C -0.108 4.108 17 C -0.164 4.164 18 C 0.050 3.950 19 O -0.310 6.310 20 C -0.147 4.147 21 C -0.083 4.083 22 C -0.064 4.064 23 H 0.076 0.924 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.039 0.961 27 H 0.037 0.963 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.242 0.758 34 H 0.143 0.857 35 H 0.104 0.896 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.800 -0.357 14.881 15.975 hybrid contribution 0.658 -0.039 0.113 0.669 sum -5.142 -0.396 14.994 15.856 Atomic orbital electron populations 1.22588 0.99534 1.01829 1.00833 1.22175 0.90288 0.98883 0.92074 0.90610 1.19150 0.96488 0.95305 0.89570 1.21169 0.91729 1.33179 1.07074 0.92110 1.24996 0.98077 0.95805 0.95923 1.69959 1.35258 1.36886 1.12331 0.86619 0.86334 0.78392 0.76758 1.20897 1.21592 1.19999 1.65572 1.52203 1.01125 1.00493 1.21789 0.99318 0.94681 0.90022 1.20920 0.98502 0.93470 0.96868 1.20383 0.99806 0.97781 0.92781 1.21244 1.03365 0.97217 0.94590 1.18241 1.01708 0.92327 0.82728 1.84819 1.35544 1.95019 1.15626 1.20662 1.02890 0.98515 0.92679 1.20590 0.98224 0.96283 0.93171 1.21809 1.00195 0.95130 0.89238 0.92370 0.93656 0.92146 0.96081 0.96326 0.93285 0.91324 0.88673 0.85559 0.85479 0.75802 0.85723 0.89586 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.15 8.32 37.16 0.31 -2.84 16 2 C 0.07 1.47 2.29 -67.71 -0.15 1.32 16 3 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 4 C 0.03 0.80 4.43 -27.89 -0.12 0.68 16 5 C -0.49 -13.73 8.84 -34.44 -0.30 -14.03 16 6 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.38 16 8 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 9 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 13 N -0.47 -9.04 5.18 -226.93 -1.18 -10.21 16 14 C 0.07 1.23 5.39 -4.10 -0.02 1.21 16 15 C -0.10 -1.53 6.26 -104.28 -0.65 -2.18 16 16 C -0.09 -1.21 10.04 -39.63 -0.40 -1.60 16 17 C -0.15 -1.81 9.99 -39.43 -0.39 -2.20 16 18 C 0.09 1.20 6.71 -39.21 -0.26 0.94 16 19 O -0.50 -5.43 13.50 -19.43 -0.26 -5.70 16 20 C -0.13 -1.73 9.98 -39.46 -0.39 -2.13 16 21 C -0.08 -1.25 6.26 -104.34 -0.65 -1.90 16 22 C 0.06 1.02 6.39 -4.11 -0.03 0.99 16 23 H 0.06 0.97 6.19 -51.93 -0.32 0.65 16 24 H 0.04 0.67 5.99 -51.93 -0.31 0.36 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.02 0.49 7.33 -51.93 -0.38 0.11 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.07 1.17 5.15 -51.93 -0.27 0.91 16 30 H 0.10 1.84 8.10 -51.93 -0.42 1.42 16 31 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 32 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.39 2.33 9.06 45.56 0.41 2.74 16 34 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 35 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.06 0.91 5.75 -51.93 -0.30 0.61 16 LS Contribution 293.54 15.07 4.42 4.42 Total: -1.00 -31.47 293.54 -8.56 -40.03 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -4.09 Total: 1.14 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -3.17 Total: -20.39 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: -0.44 Total: -36.52 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.26 Total: -5.70 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.47 -8.56 -40.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599536719.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.978 kcal (2) G-P(sol) polarization free energy of solvation -31.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds