Wall clock time and date at job start Sun Mar 29 2020 23:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46811 * 2 1 4 4 C 1.52992 * 109.47399 * 239.99562 * 2 1 3 5 5 C 1.50703 * 109.47282 * 175.00119 * 4 2 1 6 6 H 1.08000 * 119.99800 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00247 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00304 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00122 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46838 * 90.00142 * 9 7 5 11 11 H 1.48502 * 109.47429 * 209.99478 * 9 7 5 12 12 H 1.48499 * 109.47391 * 330.00423 * 9 7 5 13 13 N 1.46907 * 109.47058 * 119.99105 * 2 1 3 14 14 C 1.48042 * 110.99706 * 50.71244 * 13 2 1 15 15 C 1.51201 * 105.67498 * 213.00212 * 14 13 2 16 16 C 1.38237 * 131.70457 * 197.51555 * 15 14 13 17 17 C 1.38119 * 120.10128 * 180.02562 * 16 15 14 18 18 C 1.38758 * 119.94753 * 0.02562 * 17 16 15 19 19 O 1.35901 * 120.06081 * 179.97438 * 18 17 16 20 20 C 1.38718 * 119.88391 * 0.02562 * 18 17 16 21 21 C 1.38094 * 119.98614 * 359.96437 * 20 18 17 22 22 C 1.48039 * 111.00065 * 295.69815 * 13 2 1 23 23 H 1.09001 * 109.46903 * 171.52147 * 1 2 3 24 24 H 1.09001 * 109.47550 * 291.51773 * 1 2 3 25 25 H 1.08993 * 109.47391 * 51.52414 * 1 2 3 26 26 H 1.09003 * 109.47505 * 54.99718 * 4 2 1 27 27 H 1.09000 * 109.47146 * 294.99526 * 4 2 1 28 28 H 0.96996 * 120.00418 * 179.97438 * 8 7 5 29 29 H 1.09006 * 110.21158 * 332.05433 * 14 13 2 30 30 H 1.09004 * 110.20756 * 93.95200 * 14 13 2 31 31 H 1.08000 * 119.95062 * 0.02871 * 16 15 14 32 32 H 1.07994 * 120.02962 * 179.97438 * 17 16 15 33 33 H 0.96700 * 113.99446 * 89.99818 * 19 18 17 34 34 H 1.08000 * 120.00573 * 180.02562 * 20 18 17 35 35 H 1.09000 * 110.21124 * 266.04028 * 22 13 2 36 36 H 1.08995 * 110.21146 * 27.86204 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5419 -0.6150 -1.3125 6 1 4.0789 -0.0855 -0.5394 7 6 4.2304 -1.1927 -2.3580 8 7 3.5766 -1.8371 -3.2998 9 14 6.0921 -1.0603 -2.4370 10 1 6.7009 -2.2129 -1.7255 11 1 6.5292 -1.0678 -3.8562 12 1 6.5262 0.2049 -1.7920 13 7 2.0196 -0.6923 1.1996 14 6 1.3713 -2.0146 1.3507 15 6 1.2549 -2.2447 2.8406 16 6 1.0367 -3.3923 3.5797 17 6 0.9717 -3.3268 4.9578 18 6 1.1252 -2.1071 5.6013 19 8 1.0611 -2.0400 6.9571 20 6 1.3431 -0.9562 4.8582 21 6 1.4076 -1.0261 3.4805 22 6 1.6315 0.0364 2.4284 23 1 -0.3633 -1.0165 -0.1515 24 1 -0.3634 0.3769 0.9560 25 1 -0.3634 0.6393 -0.8045 26 1 1.6054 -0.2619 -2.1369 27 1 1.7518 -1.7716 -1.2053 28 1 4.0609 -2.2433 -4.0355 29 1 0.3821 -2.0036 0.8930 30 1 1.9882 -2.7905 0.8970 31 1 0.9168 -4.3416 3.0788 32 1 0.8007 -4.2240 5.5340 33 1 1.9143 -2.1555 7.3973 34 1 1.4632 -0.0059 5.3571 35 1 2.4320 0.7092 2.7359 36 1 0.7127 0.5978 2.2588 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599536719.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:10 Heat of formation + Delta-G solvation = -24.967078 kcal Electronic energy + Delta-G solvation = -17724.705225 eV Core-core repulsion = 14980.224040 eV Total energy + Delta-G solvation = -2744.481184 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.61486 -39.54050 -37.34871 -35.10921 -33.46413 -32.16871 -29.99395 -29.09722 -28.23606 -25.61759 -24.44201 -22.58649 -22.29960 -20.44845 -18.94853 -18.36619 -17.59327 -16.80530 -16.64586 -16.22733 -16.14053 -15.20672 -14.98795 -14.82139 -14.40941 -14.26979 -13.88551 -13.50183 -13.28742 -12.99401 -12.76395 -12.71055 -12.58316 -12.47240 -12.34173 -12.26739 -11.83412 -11.35681 -11.14412 -11.08079 -10.49070 -9.88466 -9.63371 -8.91863 -8.10513 -6.15552 0.22637 0.34472 1.42029 1.43012 1.53778 2.47364 2.59522 3.06618 3.19970 3.27648 3.59534 3.65203 4.05357 4.13170 4.28030 4.31590 4.42277 4.46891 4.51065 4.61206 4.63697 4.82788 4.96300 4.98347 5.04119 5.14390 5.25160 5.32211 5.40306 5.45062 5.58677 5.68269 5.83942 5.87374 6.07547 6.24154 6.44963 6.86836 6.97952 7.50517 9.01489 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.029526 B = 0.005408 C = 0.005096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.098766 B = 5175.815828 C = 5492.810361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.083 3.917 3 H 0.073 0.927 4 C 0.038 3.962 5 C -0.503 4.503 6 H 0.057 0.943 7 C -0.003 4.003 8 N -0.939 5.939 9 Si 0.956 3.044 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.266 1.266 13 N -0.499 5.499 14 C 0.074 3.926 15 C -0.121 4.121 16 C -0.091 4.091 17 C -0.144 4.144 18 C 0.103 3.897 19 O -0.504 6.504 20 C -0.132 4.132 21 C -0.092 4.092 22 C 0.068 3.932 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.066 0.934 26 H -0.003 1.003 27 H -0.005 1.005 28 H 0.259 0.741 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.140 0.860 32 H 0.153 0.847 33 H 0.411 0.589 34 H 0.142 0.858 35 H 0.091 0.909 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.729 -0.073 17.643 18.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.025 4.025 3 H 0.092 0.908 4 C 0.001 3.999 5 C -0.542 4.542 6 H 0.075 0.925 7 C -0.199 4.199 8 N -0.581 5.581 9 Si 0.782 3.218 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.190 1.190 13 N -0.222 5.222 14 C -0.053 4.053 15 C -0.122 4.122 16 C -0.109 4.109 17 C -0.162 4.162 18 C 0.058 3.942 19 O -0.317 6.317 20 C -0.151 4.151 21 C -0.093 4.093 22 C -0.059 4.059 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.016 0.984 27 H 0.013 0.987 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.158 0.842 32 H 0.171 0.829 33 H 0.270 0.730 34 H 0.160 0.840 35 H 0.109 0.891 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.689 -0.085 17.311 18.222 hybrid contribution 0.618 -0.154 -0.528 0.827 sum -5.071 -0.239 16.783 17.534 Atomic orbital electron populations 1.22452 0.96867 1.01978 1.02415 1.21854 0.92388 0.97775 0.90511 0.90842 1.18991 0.95256 0.94270 0.91386 1.21495 0.93298 1.32633 1.06740 0.92490 1.25829 1.02845 0.95579 0.95675 1.70083 1.37085 1.37920 1.13010 0.85582 0.80671 0.78637 0.76919 1.20520 1.21060 1.19040 1.65386 1.53332 1.02078 1.01391 1.21604 0.98512 0.93339 0.91881 1.20817 1.01062 0.94844 0.95476 1.20606 0.99174 0.97696 0.93465 1.21521 1.02315 0.98266 0.94091 1.18323 1.00168 0.92086 0.83592 1.84764 1.37514 1.94942 1.14490 1.20847 1.02604 0.99772 0.91906 1.20562 0.99247 0.95600 0.93855 1.21775 1.00901 0.95219 0.88010 0.92749 0.91277 0.91473 0.98433 0.98683 0.93222 0.91253 0.91754 0.84205 0.82924 0.73038 0.83976 0.89105 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.85 8.32 71.98 0.60 -5.25 16 2 C 0.08 3.36 2.29 44.91 0.10 3.46 16 3 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 4 C 0.04 1.98 4.43 29.85 0.13 2.11 16 5 C -0.50 -28.71 8.84 25.60 0.23 -28.49 16 6 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 7 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 8 N -0.94 -57.61 13.29 21.45 0.28 -57.33 16 9 Si 0.96 45.67 29.54 68.60 2.03 47.69 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 13 N -0.50 -19.31 5.18 -871.88 -4.52 -23.83 16 14 C 0.07 2.70 5.39 85.50 0.46 3.16 16 15 C -0.12 -3.75 6.26 -19.65 -0.12 -3.87 16 16 C -0.09 -2.33 10.04 22.24 0.22 -2.11 16 17 C -0.14 -3.15 9.99 22.37 0.22 -2.92 16 18 C 0.10 2.29 6.71 22.51 0.15 2.45 16 19 O -0.50 -9.03 13.50 -92.43 -1.25 -10.28 16 20 C -0.13 -3.23 9.98 22.35 0.22 -3.00 16 21 C -0.09 -2.67 6.26 -19.68 -0.12 -2.80 16 22 C 0.07 2.09 6.39 85.49 0.55 2.64 16 23 H 0.05 1.82 6.19 -2.39 -0.01 1.80 16 24 H 0.07 1.93 5.99 -2.39 -0.01 1.92 16 25 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 27 H -0.01 -0.29 7.33 -2.39 -0.02 -0.31 16 28 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 29 H 0.07 2.44 5.15 -2.38 -0.01 2.43 16 30 H 0.06 2.66 8.10 -2.38 -0.02 2.64 16 31 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 32 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.41 3.30 9.06 -74.06 -0.67 2.63 16 34 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 35 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.07 2.06 5.75 -2.39 -0.01 2.05 16 Total: -1.00 -68.10 293.54 0.06 -68.04 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 0.42 Total: 10.05 kcal Atomic # 6 Polarization: -37.45 SS G_CDS: 3.10 Total: -34.34 kcal Atomic # 7 Polarization: -76.93 SS G_CDS: -4.24 Total: -81.16 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -1.25 Total: -10.28 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -68.10 0.06 -68.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599536719.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.072 kcal (2) G-P(sol) polarization free energy of solvation -68.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds